Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

27389545 .. 27390754

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1225400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAGCTTGCTAAAGATGTTGACCTAGAAAAGATAGCTAAGGACACACATGGTTATGTTGGTGCGGATCTTGCTGCTTTGTGTACTAAGGGTTCACTTCAATGCATTAGAGAGAAGATGGATGTGATCAACTTAGAAGATGAGGAAATAGATGCTGAGATTATTAATTTAATGGCAGTTATAAACCATCACCTAAAGACTGTTCTTAGCACAAGCAACCCTTCTGCCCTTCGTGAAACAGTTGTTGAAGTACCGAATGTTAGTTGGGAAGATATTGGAGGTCTCAAAAGTGTTAAGAGGGAACTTCAAGAGACGGATGTGGTAAAACTCTTCTTGCAAAAGCAATTGCCAATGAGTGTCAAGCAAACTTCATTAGTACAAAGGGGCTTGAATTGCTTACACGAGGCCAATGTACGTGAAATCTTTGACAAAGCCCGTGGGTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGATTCCATTGTGACTCAGAGAGGGAGTAGTGTAGGTGATGCTAGGGGTGCTGCTGATAGGGTTTTGAATCAACTTCTTACAGAAATAGATGGAATGTCTACAAAGAAAATTGTTTTCATTATCAAGGCCACCAACAGGCCAGACATTATAGACCCTGCACTTCTGCGTCCAGGTCATCTAGATCAGTTGATTTACATTCCTCTCCCTAATGAGAAATCTCACTATCAAGTATTCCAGTCTTGCTTAAGGAATTCTCCAGTTTTTAAAGATGTGGACATCAGAGCCCTTGCCAAGTACACTGCTGGTTTTAGTGGTGCGGATATAACGGAAATATGCCAGCGTGCTTGCAAATATGCAATCAGAGAGAACATTGAAAAGGATATTGAGAGGGAGAGGAGGAGAAATCAGAATCTTAAGGCAATGGAAGATGACGTTATTGATGAAGTAGCAGATATCAAGGCAGCTCATTTTGAGGAATCGATGAAGTATGCTCGTAGGAGTGTTAGTGATGCTGATATCTGCAAATACCAGGCATTTGCACAGACACTGCAGCAGTCAAGAGAGTTTGGAATAGATTTCAGGTTTGCAGACGATGCTTCCAACGGACGTGTTACTTCTGGGGCTGGTGAAGATGACCTTTACAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

375

Amino Acids

41.91

Weight (kDa)

5.29

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_3	PF17862	6 - 49	3.9e-14	AAA+ lid domain
AAA	PF00004	134 - 226	7.6e-22	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	248 - 287	6.2e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	572
AciI	CCGC	2 cut(s)	65, 791
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	724
AfaI	GTAC	5 cut(s)	85, 252, 378, 414, 770
AfiI	CCNNNNNNNGG	1 cut(s)	609
AflII	CTTAAG	2 cut(s)	718, 887
AflIII	ACRYGT	1 cut(s)	1081
AgsI	TTSAA	6 cut(s)	101, 248, 308, 391, 541, 848
AjiI	CACGTC	1 cut(s)	1082
AjnI	CCWGG	2 cut(s)	643, 1002
AluBI	AGCT	3 cut(s)	7, 38, 938
AluI	AGCT	3 cut(s)	7, 38, 938
Alw26I	GTCTC	2 cut(s)	287, 305
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	1021
AoxI	GGCC	3 cut(s)	405, 600, 611
ApeKI	GCWGC	4 cut(s)	74, 524, 935, 1024
ApoI	RAATTY	1 cut(s)	724
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	182, 521, 1112
BanII	GRGCYC	1 cut(s)	760
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	61, 511, 947, 1036
BccI	CCATC	3 cut(s)	112, 195, 557
BciT130I	CCWGG	2 cut(s)	645, 1004
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	287, 305
BfaI	CTAG	3 cut(s)	26, 516, 653
BfmI	CTRYAG	1 cut(s)	1022
BfrI	CTTAAG	2 cut(s)	718, 887
BisI	GCNGC	4 cut(s)	75, 525, 936, 1025
BlsI	GCNGC	4 cut(s)	76, 526, 937, 1026
Bme1390I	CCNGG	2 cut(s)	645, 1004
BmgBI	CACGTC	1 cut(s)	1082
BmrFI	CCNGG	2 cut(s)	645, 1004
BmsI	GCATC	4 cut(s)	142, 502, 973, 1057
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	953
BsaAI	YACGTR	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	709, 731
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	645, 1004
BseCI	ATCGAT	1 cut(s)	953
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	127, 322
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	147, 503
BseNI	ACTGG	2 cut(s)	709, 731
BseRI	GAGGAG	2 cut(s)	883, 886
BseXI	GCAGC	4 cut(s)	61, 511, 947, 1036
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	407, 602, 613
BshVI	ATCGAT	1 cut(s)	953
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	2 cut(s)	287, 305
BsmBI	CGTCTC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	407, 602, 613
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	67, 126, 655
BspACI	CCGC	2 cut(s)	65, 791
BspANI	GGCC	3 cut(s)	407, 602, 613
BspCNI	CTCAG	2 cut(s)	148, 502
BspDI	ATCGAT	1 cut(s)	953
BspMAI	CTGCAG	1 cut(s)	1026
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	2 cut(s)	718, 887
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	709, 731
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	67, 126, 655
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	645, 1004
Bst4CI	ACNGT	2 cut(s)	202, 241
Bst6I	CTCTTC	1 cut(s)	335
BstAFI	CTTAAG	2 cut(s)	718, 887
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	9, 812, 816, 820
BstDEI	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 489
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	127, 322
BstKTI	GATC	3 cut(s)	70, 129, 658
BstMAI	GTCTC	2 cut(s)	287, 305
BstMBI	GATC	3 cut(s)	67, 126, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 393, 521, 1067
BstNI	CCWGG	2 cut(s)	645, 1004
BstSCI	CCNGG	2 cut(s)	643, 1002
BstSFI	CTRYAG	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	61, 511, 947, 1036
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	953
BsuRI	GGCC	3 cut(s)	407, 602, 613
BsuTUI	ATCGAT	1 cut(s)	953
BtgI	CCRYGG	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	1082
BtsCI	GGATG	2 cut(s)	127, 322
BtsI	GCAGTG	2 cut(s)	771, 1019
BtsIMutI	CAGTG	2 cut(s)	771, 1019
Cac8I	GCNNGC	4 cut(s)	9, 812, 816, 820
CaiI	CAGNNNCTG	1 cut(s)	1021
ClaI	ATCGAT	1 cut(s)	953
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	5 cut(s)	84, 251, 377, 413, 769
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	2 cut(s)	50, 450
CviQI	GTAC	5 cut(s)	84, 251, 377, 413, 769
DdeI	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 489
DpnI	GATC	3 cut(s)	69, 128, 657
DpnII	GATC	3 cut(s)	67, 126, 655
DraI	TTTAAA	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	760
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	928, 991
EcoRI	GAATTC	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	643, 1002
EcoRV	GATATC	2 cut(s)	928, 991
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	760
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	2 cut(s)	53, 453
FalI	AAGNNNNNCTT	3 cut(s)	205, 237, 1095
FatI	CATG	2 cut(s)	49, 449
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	572
Fnu4HI	GCNGC	4 cut(s)	75, 525, 936, 1025
FokI	GGATG	2 cut(s)	134, 329
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	4 cut(s)	75, 525, 936, 1025
FspBI	CTAG	3 cut(s)	26, 516, 653
GluI	GCNGC	4 cut(s)	75, 525, 936, 1025
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	407, 602, 613
HgaI	GACGC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	53, 453
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	5 cut(s)	476, 487, 541, 883, 950
HphI	GGTGA	3 cut(s)	182, 521, 1112
Hpy166II	GTNNAC	6 cut(s)	22, 84, 95, 573, 748, 771
Hpy188I	TCNGA	4 cut(s)	492, 755, 836, 882
Hpy188III	TCNNGA	4 cut(s)	233, 308, 653, 1032
Hpy8I	GTNNAC	6 cut(s)	22, 84, 95, 573, 748, 771
HpyAV	CCTTC	2 cut(s)	231, 239
HpyCH4III	ACNGT	2 cut(s)	202, 241
HpyCH4IV	ACGT	3 cut(s)	415, 906, 1081
HpyCH4V	TGCA	9 cut(s)	105, 337, 632, 822, 830, 996, 1013, 1024, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 393, 521, 1067
HpyF3I	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 489
HpySE526I	ACGT	3 cut(s)	415, 906, 1081
Hsp92II	CATG	2 cut(s)	53, 453
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	67, 126, 655
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	4 cut(s)	61, 511, 947, 1036
LweI	GCATC	4 cut(s)	142, 502, 973, 1057
MaeI	CTAG	3 cut(s)	26, 516, 653
MaeII	ACGT	3 cut(s)	415, 906, 1081
MaeIII	GTNAC	2 cut(s)	484, 1084
MalI	GATC	3 cut(s)	69, 128, 657
MboI	GATC	3 cut(s)	67, 126, 655
MboII	GAAGA	6 cut(s)	127, 149, 281, 322, 911, 1115
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	5 cut(s)	166, 344, 391, 582, 724
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	1098
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	6 cut(s)	165, 170, 294, 719, 738, 888
MslI	CAYNNNNRTG	2 cut(s)	54, 100
MspCI	CTTAAG	2 cut(s)	718, 887
MspR9I	CCNGG	2 cut(s)	645, 1004
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	645, 1004
MwoI	GCNNNNNNNGC	4 cut(s)	71, 393, 521, 1067
NdeII	GATC	3 cut(s)	67, 126, 655
NlaIII	CATG	2 cut(s)	53, 453
NmuCI	GTSAC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	107
PfeI	GAWTC	4 cut(s)	476, 541, 883, 950
PkrI	GCNGC	4 cut(s)	76, 526, 937, 1026
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	643, 1002
PspGI	CCWGG	2 cut(s)	643, 1002
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
PstI	CTGCAG	1 cut(s)	1026
PstNI	CAGNNNCTG	1 cut(s)	1021
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	5 cut(s)	85, 252, 378, 414, 770
RsaNI	GTAC	5 cut(s)	84, 251, 377, 413, 769
RseI	CAYNNNNRTG	2 cut(s)	54, 100
SaqAI	TTAA	6 cut(s)	165, 170, 294, 719, 738, 888
SatI	GCNGC	4 cut(s)	75, 525, 936, 1025
Sau3AI	GATC	3 cut(s)	67, 126, 655
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	645, 1004
SduI	GDGCHC	1 cut(s)	760
SfaNI	GCATC	4 cut(s)	142, 502, 973, 1057
SfcI	CTRYAG	1 cut(s)	1022
SmiMI	CAYNNNNRTG	2 cut(s)	54, 100
SmlI	CTYRAG	2 cut(s)	718, 887
SmoI	CTYRAG	2 cut(s)	718, 887
Sse9I	AATT	5 cut(s)	166, 344, 391, 582, 724
SsiI	CCGC	2 cut(s)	65, 791
SspMI	CTAG	3 cut(s)	26, 516, 653
StyD4I	CCNGG	2 cut(s)	643, 1002
TaaI	ACNGT	2 cut(s)	202, 241
TaiI	ACGT	3 cut(s)	418, 909, 1084
TaqI	TCGA	1 cut(s)	953
TasI	AATT	5 cut(s)	166, 344, 391, 582, 724
TatI	WGTACW	3 cut(s)	83, 376, 768
TfiI	GAWTC	4 cut(s)	476, 541, 883, 950
Tru1I	TTAA	6 cut(s)	165, 170, 294, 719, 738, 888
Tru9I	TTAA	6 cut(s)	165, 170, 294, 719, 738, 888
TscAI	CASTG	2 cut(s)	778, 1026
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	74, 524, 935, 1024
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	6 cut(s)	17, 360, 483, 580, 930, 971
TspGWI	ACGGA	3 cut(s)	329, 815, 1092
TspRI	CASTG	2 cut(s)	778, 1026
Vha464I	CTTAAG	2 cut(s)	718, 887
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	724
XbaI	TCTAGA	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	572
XspI	CTAG	3 cut(s)	26, 516, 653
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.