Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

14905500 .. 14909562

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGACCGATAAAGCTGAATCGTCCGACCCTAAGGGGACCAAGAGGGATTTCAGCACTGCGATTCTCGAGCGGAAGAAGGCGGCGAATCGCCTCGTCGTCGATGAGGCCATCAACGACGACAACTCCGTCGTCGCGCTCCACCCTGAGACCATGGAGAAGCTCCAGCTCTTCAGGGGCGACACAATCCTCATCAAGGGAAAGAAAAGGAAGGATACAATCTGCATTGCCCTTGCTGATGATACTTGTGACGAACCAAAGATTAGGATGAACAAGGTTGTGAGGAGCAATCTAAGGGTTAGGCTCGGGGATGTTGTTTCTGTTCACCAATGTGCTGATGTCAAGTACGGGAAGCGTGTGCACATTCTCCCTGTGGATGACACTATTGAAGGGGTTACTGGAAGTCTGTTTGATGCCTACTTGAAACCATATTTCCTGGAGGCCTACCGCCCAGTGAGAAAGGGTGATCTCTTCCTAGTGAGAGGAGGAATGAGGAGTGTAGAGTTCAAGGTTATTGAGACTGATCCTTCTGAGTACTGTGTTGTTGCTCCAGACACTGAAATCTTCTGTGAGGGGGAGCCAGTAAGAAGGGAGGATGAGGATAGATTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTCAGGAAGCAGATGGCTCAGATTCGTGAATTAGTGGAGCTGCCACTAAGGCATCCTCAGCTCTTTAAATCAATTGGTGTGAAGCCACCAAAGGGTATTCTGTTGTATGGGCCACCTGGATCTGGTAAAACTCTAATTGCCAGAGCTGTCGCGAATGAAACTGGGGCATTCTTTTTCTGCATCAATGGACCTGAAATCATGTCAAAATTGGCTGGGGAGAGTGAAAGCAACCTCAGGAAAGCTTTTGAGGAAGCAGAGAAGAATGCACCATCAATTATCTTCATTGATGAGATTGATTCAATTGCTCCCAAGAGAGAGAAGACACATGGAGAAGTTGAGAGGAGAATTGTGTCCCAGCTCTTGACACTTATGGATGGACTTAAATCCCGTGCGCATGTAATTGTTATGGGGGCTACAAATCGTCCAAACAGTATTGACCCAGCTCTCAGAAGGTTTGGTAGATTTGATAGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTCCTTCGTATTCATACAAAGAACATGAAGCTTGCTGAAGATGTTGATCTGGAAAAGATTGGCAAGGAGACACATGGTTATGTTGGTGCTGATCTTGCTGCTTTATGTACTGAGGCTGCACTCCAGTGCATCAGAGAGAAGATGGATGTCATTGACTTGGAAGATGAGGAAATAGATGCTGAGATACTCAACTCAATGGCAGTTACAAATGAACACTTCTCGACTGCTCTTGGAACAAGTAACCCATCTGCTCTTCGTGAAACGGTTGTTGAAGTGCCCAATGTTTCCTGGGATGCTATAGGAGGTCTTGAGAATGTTAAGAGAGAACTTCAAGAGACGGTTCAATATCCTGTTGAGCATCCTGAGAAATTTGAGAAATTTGGGATGTCGCCCTCAAAGGGAGTTCTATTCTATGGCCCTCCTGGGTGTGGTAAAACTCTTCTTGCCAAGGCAATTGCCAATGAGTGCCAGGCAAACTTCATCAGTATCAAGGGACCTGAATTGCTTACTATGTGGTTTGGAGAGAGTGAGGCCAATGTGCGTGAAATCTTTGACAAGGCTCGAGGATCTGCTCCATGTGTCCTGTTCTTCGACGAACTTGATTCCATTGCTACTCAGAGAGGTAGCAGTTCAGGTGATGCCGGAGGTGCTGCAGATAGGGTTTTAAACCAACTCCTTACAGAGATGGATGGAATGTCCGCAAAGAAGACTGTTTTCATTATCGGTGCCACCAACAGACCTGACATTATAGACCCTGCACTTCTACGTCCGGGCCGTCTGGATCAATTGATATACATCCCTCTTCCTGATGAGGAATCCCGCCTTCAAATATTCAAGGCAGCCTTGAGGAAGTCTCCAGTTTCCAAAGAAGTGGACCTTGCTGCCCTTGCCAAGTACACCCAAGGTTTCAGCGGTGCTGATATCACAGAAATTTGCCAGCGTGCTGTCAAATATGCCATCAGAGAGAATATTGAGAAGGATATTGAGAGGGAGAGGAGGAGAAGCGAGAATCCTGAGGCTATGGAGGAAGATGTGGAGGATGAAGTTCCTGAAATCAGGGCAGCTCACTTTGAGGAATCAATGAAGTTTGCTCGTCGCAGTGTTAGTGATGCTGATATCCGCAAATACCAGGCGTTTGCTCAGACATTGCAGCAGTCAAGAGGATTTGGAACAGAGTTTAGGTTTCCAGAAAGTGGCTCTGCAGCAGCCGCCACTGGATCTGACCCTTTTGCAACTAGTGGTGCCGGGGCTGATGAAGATGACCTTTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

807

Amino Acids

89.43

Weight (kDa)

5.07

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	30 - 111	1.5e-23	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	132 - 195	1.9e-11	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	245 - 374	1.4e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	397 - 440	2.5e-16	AAA+ lid domain
AAA	PF00004	518 - 651	4.6e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	673 - 712	4.8e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	1029
AccB1I	GGYRCC	2 cut(s)	1874, 2390
AccB7I	CCANNNNNTGG	1 cut(s)	2342
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	2 cut(s)	134, 788
AciI	CCGC	8 cut(s)	70, 80, 445, 1848, 1969, 2061, 2269, 2358
AclWI	GGATC	5 cut(s)	515, 763, 1723, 1938, 2374
AcsI	RAATTY	3 cut(s)	1517, 1526, 2079
AcuI	CTGAAG	2 cut(s)	154, 1206
AcyI	GRCGYC	1 cut(s)	1141
AfaI	GTAC	4 cut(s)	344, 533, 1258, 2045
AfiI	CCNNNNNNNGG	6 cut(s)	193, 728, 758, 1547, 1577, 2342
AgsI	TTSAA	9 cut(s)	386, 421, 505, 936, 1421, 1481, 1493, 1976, 1984
AhlI	ACTAGT	1 cut(s)	2384
AjnI	CCWGG	6 cut(s)	432, 751, 1436, 1570, 1617, 2277
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	2 cut(s)	327, 1273
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	5 cut(s)	140, 509, 1211, 1478, 2007
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	5 cut(s)	515, 763, 1723, 1938, 2374
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	3 cut(s)	65, 302, 1710
AoxI	GGCC	6 cut(s)	105, 438, 746, 1564, 1680, 1921
ApaLI	GTGCAC	1 cut(s)	356
ApoI	RAATTY	3 cut(s)	1517, 1526, 2079
AspLEI	GCGC	2 cut(s)	136, 1030
AspS9I	GGNCC	8 cut(s)	36, 746, 824, 1150, 1565, 1643, 1921, 2023
AsuC2I	CCSGG	2 cut(s)	1920, 2395
AsuHPI	GGTGA	3 cut(s)	314, 473, 1796
AvaI	CYCGRG	3 cut(s)	65, 302, 1710
AvaII	GGWCC	5 cut(s)	36, 824, 1150, 1643, 2023
AxyI	CCTNAGG	3 cut(s)	30, 869, 2163
BaeGI	GKGCMC	2 cut(s)	360, 1428
BanI	GGYRCC	2 cut(s)	1874, 2390
BbsI	GAAGAC	2 cut(s)	962, 1862
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	693
BccI	CCATC	9 cut(s)	116, 643, 913, 1004, 1285, 1402, 1828, 1832, 2114
BceAI	ACGGC	1 cut(s)	1908
BciT130I	CCWGG	6 cut(s)	434, 753, 1438, 1572, 1619, 2279
BciVI	GTATCC	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	1920, 2395
BcoDI	GTCTC	5 cut(s)	140, 509, 1211, 1478, 2007
BcuI	ACTAGT	1 cut(s)	2384
BfaI	CTAG	2 cut(s)	473, 2385
BfmI	CTRYAG	3 cut(s)	1446, 1800, 2349
BfuI	GTATCC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	685
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	8 cut(s)	434, 753, 1438, 1572, 1619, 1920, 2279, 2395
Bme18I	GGWCC	5 cut(s)	36, 824, 1150, 1643, 2023
BmeT110I	CYCGRG	3 cut(s)	65, 302, 1710
BmgT120I	GGNCC	8 cut(s)	36, 746, 824, 1150, 1565, 1643, 1921, 2023
BmiI	GGNNCC	5 cut(s)	37, 576, 1644, 1876, 2392
BmrFI	CCNGG	8 cut(s)	434, 753, 1438, 1572, 1619, 1920, 2279, 2395
BmrI	ACTGGG	2 cut(s)	443, 807
BmsI	GCATC	9 cut(s)	400, 697, 825, 1287, 1315, 1432, 1516, 1777, 2248
BmuI	ACTGGG	2 cut(s)	443, 807
BpiI	GAAGAC	2 cut(s)	962, 1862
BplI	GAGNNNNNCTC	2 cut(s)	1987, 2019
BpmI	CTGGAG	5 cut(s)	146, 455, 531, 1256, 1989
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	3 cut(s)	1166, 1478, 2014
BpuMI	CCSGG	2 cut(s)	1920, 2395
BsaBI	GATNNNNATC	2 cut(s)	1194, 1943
BsaHI	GRCGYC	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	6 cut(s)	150, 1437, 1571, 1596, 2050, 2394
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 728, 758, 1547, 1577, 2342
Bse1I	ACTGG	7 cut(s)	400, 449, 578, 802, 1273, 2006, 2368
Bse21I	CCTNAGG	3 cut(s)	30, 869, 2163
Bse3DI	GCAATG	3 cut(s)	222, 1755, 2294
Bse8I	GATNNNNATC	2 cut(s)	1194, 1943
BseBI	CCWGG	6 cut(s)	434, 753, 1438, 1572, 1619, 2279
BseDI	CCNNGG	6 cut(s)	150, 1437, 1571, 1596, 2050, 2394
BseJI	GATNNNNATC	2 cut(s)	1194, 1943
BseLI	CCNNNNNNNGG	6 cut(s)	193, 728, 758, 1547, 1577, 2342
BseMI	GCAATG	3 cut(s)	222, 1755, 2294
BseNI	ACTGG	7 cut(s)	400, 449, 578, 802, 1273, 2006, 2368
BseRI	GAGGAG	6 cut(s)	295, 495, 505, 991, 2158, 2161
BseSI	GKGCMC	2 cut(s)	360, 1428
BseYI	CCCAGC	3 cut(s)	848, 990, 1075
BsgI	GTGCAG	2 cut(s)	1251, 1890
Bsh1236I	CGCG	2 cut(s)	134, 788
BshFI	GGCC	6 cut(s)	107, 440, 748, 1566, 1682, 1923
BshNI	GGYRCC	2 cut(s)	1874, 2390
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	3 cut(s)	65, 302, 1710
BsiSI	CCGG	3 cut(s)	1791, 1919, 2394
BslFI	GGGAC	3 cut(s)	49, 973, 1656
BslI	CCNNNNNNNGG	6 cut(s)	193, 728, 758, 1547, 1577, 2342
BsmAI	GTCTC	5 cut(s)	140, 509, 1211, 1478, 2007
BsmBI	CGTCTC	1 cut(s)	1478
BsmFI	GGGAC	3 cut(s)	49, 973, 1656
BsmI	GAATGC	2 cut(s)	803, 904
BsnI	GGCC	6 cut(s)	107, 440, 748, 1566, 1682, 1923
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	3 cut(s)	65, 302, 1710
Bsp1286I	GDGCHC	2 cut(s)	360, 1428
Bsp143I	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	788
BspACI	CCGC	8 cut(s)	70, 80, 445, 1848, 1969, 2061, 2269, 2358
BspANI	GGCC	6 cut(s)	107, 440, 748, 1566, 1682, 1923
BspFNI	CGCG	2 cut(s)	134, 788
BspLI	GGNNCC	5 cut(s)	37, 576, 1644, 1876, 2392
BspMAI	CTGCAG	2 cut(s)	1804, 2353
BspPI	GGATC	5 cut(s)	515, 763, 1723, 1938, 2374
BspQI	GCTCTTC	2 cut(s)	173, 1407
BspT107I	GGYRCC	2 cut(s)	1874, 2390
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	3 cut(s)	222, 1755, 2294
BsrI	ACTGG	7 cut(s)	400, 449, 578, 802, 1273, 2006, 2368
BssECI	CCNNGG	6 cut(s)	150, 1437, 1571, 1596, 2050, 2394
BssMI	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
BssNI	GRCGYC	1 cut(s)	1141
BssT1I	CCWWGG	3 cut(s)	150, 1596, 2050
Bst2UI	CCWGG	6 cut(s)	434, 753, 1438, 1572, 1619, 2279
Bst4CI	ACNGT	5 cut(s)	536, 1067, 1414, 1489, 1861
Bst6I	CTCTTC	5 cut(s)	173, 473, 1407, 1593, 1956
BstACI	GRCGYC	1 cut(s)	1141
BstC8I	GCNNGC	3 cut(s)	1182, 2087, 2091
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstFNI	CGCG	2 cut(s)	134, 788
BstHHI	GCGC	2 cut(s)	136, 1030
BstKTI	GATC	8 cut(s)	466, 523, 758, 1198, 1243, 1718, 1933, 2369
BstMAI	GTCTC	5 cut(s)	140, 509, 1211, 1478, 2007
BstMBI	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
BstMWI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2036, 2357
BstNI	CCWGG	6 cut(s)	434, 753, 1438, 1572, 1619, 2279
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	8 cut(s)	432, 751, 1436, 1570, 1617, 1918, 2277, 2393
BstSFI	CTRYAG	3 cut(s)	1446, 1800, 2349
BstSLI	GKGCMC	2 cut(s)	360, 1428
BstUI	CGCG	2 cut(s)	134, 788
BstV2I	GAAGAC	2 cut(s)	962, 1862
BstX2I	RGATCY	3 cut(s)	755, 1715, 2366
BstXI	CCANNNNNNTGG	1 cut(s)	2020
BstYI	RGATCY	3 cut(s)	755, 1715, 2366
Bsu36I	CCTNAGG	3 cut(s)	30, 869, 2163
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	6 cut(s)	107, 440, 748, 1566, 1682, 1923
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	2 cut(s)	54, 2254
BtsIMutI	CAGTG	6 cut(s)	54, 456, 552, 1280, 2254, 2361
BtuMI	TCGCGA	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	1182, 2087, 2091
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	2 cut(s)	136, 1030
Cfr13I	GGNCC	8 cut(s)	36, 746, 824, 1150, 1565, 1643, 1921, 2023
CseI	GACGC	1 cut(s)	1130
Csp6I	GTAC	4 cut(s)	343, 532, 1257, 2044
CviAII	CATG	7 cut(s)	151, 835, 962, 1031, 1174, 1223, 1725
CviQI	GTAC	4 cut(s)	343, 532, 1257, 2044
DpnI	GATC	8 cut(s)	465, 522, 757, 1197, 1242, 1717, 1932, 2368
DpnII	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
DraI	TTTAAA	2 cut(s)	703, 1815
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	5 cut(s)	173, 473, 1407, 1593, 1956
EarI	CTCTTC	5 cut(s)	173, 473, 1407, 1593, 1956
Eco130I	CCWWGG	3 cut(s)	150, 1596, 2050
Eco147I	AGGCCT	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	2 cut(s)	2071, 2266
Eco47I	GGWCC	5 cut(s)	36, 824, 1150, 1643, 2023
Eco57I	CTGAAG	2 cut(s)	154, 1206
Eco81I	CCTNAGG	3 cut(s)	30, 869, 2163
Eco88I	CYCGRG	3 cut(s)	65, 302, 1710
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	1150, 1643
EcoRII	CCWGG	6 cut(s)	432, 751, 1436, 1570, 1617, 2277
EcoRV	GATATC	2 cut(s)	2071, 2266
EcoT14I	CCWWGG	3 cut(s)	150, 1596, 2050
ErhI	CCWWGG	3 cut(s)	150, 1596, 2050
Esp3I	CGTCTC	1 cut(s)	1478
FaeI	CATG	7 cut(s)	154, 838, 965, 1034, 1177, 1226, 1728
FalI	AAGNNNNNCTT	5 cut(s)	1976, 2008, 2010, 2042, 2397
FaqI	GGGAC	3 cut(s)	49, 973, 1656
FatI	CATG	7 cut(s)	150, 834, 961, 1030, 1173, 1222, 1724
FauI	CCCGC	1 cut(s)	1976
FspAI	RTGCGCAY	1 cut(s)	1029
FspBI	CTAG	2 cut(s)	473, 2385
FspI	TGCGCA	1 cut(s)	1029
GlaI	GCGC	2 cut(s)	135, 1029
GsaI	CCCAGC	3 cut(s)	852, 994, 1079
GsuI	CTGGAG	5 cut(s)	146, 455, 531, 1256, 1989
HaeIII	GGCC	6 cut(s)	107, 440, 748, 1566, 1682, 1923
HapII	CCGG	3 cut(s)	1791, 1919, 2394
HgaI	GACGC	1 cut(s)	1130
HhaI	GCGC	2 cut(s)	136, 1030
Hin1I	GRCGYC	1 cut(s)	1141
Hin1II	CATG	7 cut(s)	154, 838, 965, 1034, 1177, 1226, 1728
Hin6I	GCGC	2 cut(s)	134, 1028
HinP1I	GCGC	2 cut(s)	134, 1028
HindIII	AAGCTT	2 cut(s)	876, 1178
HinfI	GANTC	9 cut(s)	17, 61, 85, 658, 932, 1751, 1964, 2158, 2225
HpaII	CCGG	3 cut(s)	1791, 1919, 2394
HphI	GGTGA	3 cut(s)	314, 473, 1796
Hpy166II	GTNNAC	4 cut(s)	322, 358, 2023, 2046
Hpy188I	TCNGA	9 cut(s)	25, 529, 657, 1085, 1283, 1767, 2111, 2292, 2371
Hpy8I	GTNNAC	4 cut(s)	322, 358, 2023, 2046
Hpy99I	CGWCG	7 cut(s)	98, 101, 119, 131, 134, 1745, 2247
HpyAV	CCTTC	9 cut(s)	70, 202, 380, 534, 579, 1080, 1163, 1982, 2119
HpyCH4III	ACNGT	5 cut(s)	536, 1067, 1414, 1489, 1861
HpyCH4IV	ACGT	1 cut(s)	1915
HpyF10VI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2036, 2357
HpySE526I	ACGT	1 cut(s)	1915
Hsp92I	GRCGYC	1 cut(s)	1141
Hsp92II	CATG	7 cut(s)	154, 838, 965, 1034, 1177, 1226, 1728
HspAI	GCGC	2 cut(s)	134, 1028
Kzo9I	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
LguI	GCTCTTC	2 cut(s)	173, 1407
LmnI	GCTCC	8 cut(s)	141, 165, 282, 550, 574, 673, 946, 1726
LweI	GCATC	9 cut(s)	400, 697, 825, 1287, 1315, 1432, 1516, 1777, 2248
MaeI	CTAG	2 cut(s)	473, 2385
MaeII	ACGT	1 cut(s)	1915
MaeIII	GTNAC	4 cut(s)	245, 391, 1351, 1388
MalI	GATC	8 cut(s)	465, 522, 757, 1197, 1242, 1717, 1932, 2368
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
MfeI	CAATTG	4 cut(s)	708, 936, 1602, 1934
MflI	RGATCY	3 cut(s)	755, 1715, 2366
MhlI	GDGCHC	2 cut(s)	360, 1428
MmeI	TCCRAC	1 cut(s)	48
MseI	TTAA	4 cut(s)	702, 1017, 1467, 1814
MslI	CAYNNNNRTG	3 cut(s)	327, 1227, 1273
MspA1I	CMGCKG	1 cut(s)	2061
MspI	CCGG	3 cut(s)	1791, 1919, 2394
MspR9I	CCNGG	8 cut(s)	434, 753, 1438, 1572, 1619, 1920, 2279, 2395
MunI	CAATTG	4 cut(s)	708, 936, 1602, 1934
Mva1269I	GAATGC	2 cut(s)	803, 904
MvaI	CCWGG	6 cut(s)	434, 753, 1438, 1572, 1619, 2279
MvnI	CGCG	2 cut(s)	134, 788
MwoI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2036, 2357
NciI	CCSGG	2 cut(s)	1920, 2395
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
NlaIII	CATG	7 cut(s)	154, 838, 965, 1034, 1177, 1226, 1728
NlaIV	GGNNCC	5 cut(s)	37, 576, 1644, 1876, 2392
NmuCI	GTSAC	1 cut(s)	245
NruI	TCGCGA	1 cut(s)	788
NsbI	TGCGCA	1 cut(s)	1029
NspI	RCATGY	1 cut(s)	1034
OliI	CACNNNNGTG	2 cut(s)	327, 1273
PaeR7I	CTCGAG	2 cut(s)	65, 1710
PceI	AGGCCT	1 cut(s)	440
PciSI	GCTCTTC	2 cut(s)	173, 1407
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 1921
PctI	GAATGC	2 cut(s)	803, 904
PfeI	GAWTC	9 cut(s)	17, 61, 85, 658, 932, 1751, 1964, 2158, 2225
PflMI	CCANNNNNTGG	1 cut(s)	2342
PfoI	TCCNGGA	1 cut(s)	432
PpuMI	RGGWCCY	2 cut(s)	1150, 1643
Psp5II	RGGWCCY	2 cut(s)	1150, 1643
Psp6I	CCWGG	6 cut(s)	432, 751, 1436, 1570, 1617, 2277
PspFI	CCCAGC	3 cut(s)	848, 990, 1075
PspGI	CCWGG	6 cut(s)	432, 751, 1436, 1570, 1617, 2277
PspN4I	GGNNCC	5 cut(s)	37, 576, 1644, 1876, 2392
PspPI	GGNCC	8 cut(s)	36, 746, 824, 1150, 1565, 1643, 1921, 2023
PspPPI	RGGWCCY	2 cut(s)	1150, 1643
PspXI	VCTCGAGB	1 cut(s)	1710
PstI	CTGCAG	2 cut(s)	1804, 2353
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	755, 1715, 2366
RruI	TCGCGA	1 cut(s)	788
RsaI	GTAC	4 cut(s)	344, 533, 1258, 2045
RsaNI	GTAC	4 cut(s)	343, 532, 1257, 2044
RseI	CAYNNNNRTG	3 cut(s)	327, 1227, 1273
SapI	GCTCTTC	2 cut(s)	173, 1407
SaqAI	TTAA	4 cut(s)	702, 1017, 1467, 1814
Sau3AI	GATC	8 cut(s)	463, 520, 755, 1195, 1240, 1715, 1930, 2366
Sau96I	GGNCC	8 cut(s)	36, 746, 824, 1150, 1565, 1643, 1921, 2023
ScaI	AGTACT	1 cut(s)	533
ScrFI	CCNGG	8 cut(s)	434, 753, 1438, 1572, 1619, 1920, 2279, 2395
SduI	GDGCHC	2 cut(s)	360, 1428
SfaNI	GCATC	9 cut(s)	400, 697, 825, 1287, 1315, 1432, 1516, 1777, 2248
SfcI	CTRYAG	3 cut(s)	1446, 1800, 2349
Sfr274I	CTCGAG	2 cut(s)	65, 1710
SinI	GGWCC	5 cut(s)	36, 824, 1150, 1643, 2023
SlaI	CTCGAG	2 cut(s)	65, 1710
SmiMI	CAYNNNNRTG	3 cut(s)	327, 1227, 1273
SmlI	CTYRAG	5 cut(s)	65, 1145, 1457, 1710, 1993
SmoI	CTYRAG	5 cut(s)	65, 1145, 1457, 1710, 1993
SpeI	ACTAGT	1 cut(s)	2384
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	8 cut(s)	70, 80, 445, 1848, 1969, 2061, 2269, 2358
SspI	AATATT	2 cut(s)	1980, 2119
SspMI	CTAG	2 cut(s)	473, 2385
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	8 cut(s)	432, 751, 1436, 1570, 1617, 1918, 2277, 2393
StyI	CCWWGG	3 cut(s)	150, 1596, 2050
TaaI	ACNGT	5 cut(s)	536, 1067, 1414, 1489, 1861
TaiI	ACGT	1 cut(s)	1918
TaqI	TCGA	5 cut(s)	66, 99, 1370, 1711, 1740
TaqII	GACCGA	1 cut(s)	20
TatI	WGTACW	3 cut(s)	531, 1256, 2043
TauI	GCSGC	2 cut(s)	83, 2360
TfiI	GAWTC	9 cut(s)	17, 61, 85, 658, 932, 1751, 1964, 2158, 2225
Tru1I	TTAA	4 cut(s)	702, 1017, 1467, 1814
Tru9I	TTAA	4 cut(s)	702, 1017, 1467, 1814
TscAI	CASTG	6 cut(s)	61, 456, 559, 1280, 2254, 2368
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	6 cut(s)	61, 456, 559, 1280, 2254, 2368
Van91I	CCANNNNNTGG	1 cut(s)	2342
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	5 cut(s)	36, 824, 1150, 1643, 2023
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	3 cut(s)	1517, 1526, 2079
XceI	RCATGY	1 cut(s)	1034
XhoI	CTCGAG	2 cut(s)	65, 1710
XspI	CTAG	2 cut(s)	473, 2385
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.