Rorug05G0586800

Cell Division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001165
Physical Location & Seq
Forward (+)
78410212 .. 78411841
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0586800.1

Sequence Viewer

Length: 303 bp
ATGGACTCGAAGTCCGAAATCAACTCGGAGAGGGAAATACATGCATGGGTCTTCAACGGAAAGTCTCTCAATACTCGAAGCTTGAAACTTGGCGAGTTGCTTTTCTCTGTGAAGAATCAGCAATTTTGGAAAGAGTGGAGCTCTGTGCATCAGGGAGCCATCCAATTCGAAGATCGACACATTGTGGGTACAAATCAAGTACAGGAGCTGTGGTGTCACAAATTCCGGAGTTCCAGAATTTTGATTCAAAGGTATAAGGCAATAAGGACAGCAGCTGCAGTCAAGATTCCAGAGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

100

Amino Acids

11.79

Weight (kDa)

9.73

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 225
AcsI RAATTY 2 cut(s) 221, 237
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 2 cut(s) 190, 201
AgsI TTSAA 3 cut(s) 55, 85, 248
AhdI GACNNNNNGTC 1 cut(s) 10
AluBI AGCT 4 cut(s) 81, 141, 208, 275
AluI AGCT 4 cut(s) 81, 141, 208, 275
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 69
AlwNI CAGNNNCTG 2 cut(s) 208, 275
Aor13HI TCCGGA 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 272, 275
ApoI RAATTY 2 cut(s) 221, 237
AsuII TTCGAA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 262, 284
BccI CCATC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 273, 276
BlsI GCNGC 2 cut(s) 274, 277
BmeRI GACNNNNNGTC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu14I TTCGAA 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
BseAI TCCGGA 1 cut(s) 225
BseGI GGATG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 262, 284
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 172
BspEI TCCGGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 168
BssMI GATC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 168
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 262, 284
BstV2I GAAGAC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 159
CaiI CAGNNNCTG 2 cut(s) 208, 275
Csp6I GTAC 2 cut(s) 189, 200
CviAII CATG 2 cut(s) 41, 45
CviJI RGCY 5 cut(s) 81, 141, 158, 208, 275
CviKI_1 RGCY 5 cut(s) 81, 141, 158, 208, 275
CviQI GTAC 2 cut(s) 189, 200
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraIII CACNNNGTG 1 cut(s) 184
DriI GACNNNNNGTC 1 cut(s) 10
Eam1105I GACNNNNNGTC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 44, 48
FaiI YATR 3 cut(s) 42, 46, 255
FatI CATG 2 cut(s) 40, 44
Fnu4HI GCNGC 2 cut(s) 273, 276
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 273, 276
GluI GCNGC 2 cut(s) 273, 276
HapII CCGG 1 cut(s) 226
Hin1II CATG 2 cut(s) 44, 48
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 4 cut(s) 5, 115, 244, 286
HpaII CCGG 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 16, 28
Hpy188III TCNNGA 4 cut(s) 226, 234, 283, 290
HpyCH4V TGCA 3 cut(s) 44, 148, 278
Hsp92II CATG 2 cut(s) 44, 48
Kpn2I TCCGGA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 138, 155, 205
LpnPI CCDG 4 cut(s) 137, 188, 239, 247
Lsp1109I GCAGC 2 cut(s) 262, 284
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 43, 124, 182
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 4 cut(s) 122, 164, 221, 237
MnlI CCTC 1 cut(s) 24
Mph1103I ATGCAT 1 cut(s) 46
MroI TCCGGA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 226
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 44, 48
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 44
NspV TTCGAA 1 cut(s) 168
PfeI GAWTC 3 cut(s) 115, 244, 286
PkrI GCNGC 2 cut(s) 274, 277
Psp124BI GAGCTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 2 cut(s) 208, 275
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 190, 201
RsaNI GTAC 2 cut(s) 189, 200
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 2 cut(s) 273, 276
Sau3AI GATC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 143
SetI ASST 5 cut(s) 83, 143, 210, 254, 277
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 4 cut(s) 122, 164, 221, 237
SstI GAGCTC 1 cut(s) 143
TaqI TCGA 4 cut(s) 8, 76, 168, 175
TasI AATT 4 cut(s) 122, 164, 221, 237
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 3 cut(s) 115, 244, 286
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 2 cut(s) 272, 275
Tsp45I GTSAC 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 72
XapI RAATTY 2 cut(s) 221, 237
XceI RCATGY 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.