Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

17217700 .. 17223566

Gene Structure 5867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1094400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGACCGACAAGGCTGAATCTTCAGACTCTAAGGGAACGAAGAGGGACTTCAGCACCGCGATCCTCGAGCGCAAGAAGGCGGCGAATCGCCTCGTTGTGGACGACGCTGTCAACGATGACAACTCCGTCGTCGCGCTCCACCCCGATACGATGGAGAAGCTCCAGCTCTTTCGTGGCGACACCATCTTGATTAAGGGAAAGAAAAGGAAGGATACCATCTGCATTGCTCTTGCTGATGATACGTGTGAAGAACCTAAGATCAGGATGAACAAGGTTGTAAGGAGCAATCTAAGGGTTAGGCTTGGGGATGTTGTTTCTGTTCACCAATGTGCTGATGTCAAGTACGGAAAGCGTGTCCACATCCTACCTGTGGATGATACTATTGAAGGGGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCCTGGAGGCCTACCGTCCAGTGAGGAAGGGTGATCTCTTCCTTGTGAGAGGAGGAATGAGGAGTGTGGAGTTTAAGGTTATTGAAACTGACCCTCCTGAGTACTGTGTGGTCGCTCCTGACACTGAAATTTTCTGTGAGGGGGAGCCTGTTAAAAGGGAGGATGAGGAGAGATTAAATGAGGTTGGCTATGATGATGTTGGTGGAGTTAGGAAACAGATGGCTCAGATTCGTGAATTAGTGGAGTTGCCACTGAGGCATCCTCAGCTTTTCAAATCGATTGGTGTGAAGCCACCGAAGGGTATTTTGCTGTATGGACCTCCAGGATCGGGTAAGACTCTAATTGCCCGAGCTGTGGCTAATGAAACTGGGGCATTCTTTTTCTGCATCAATGGACCAGAAATCATGTCAAAATTGGCTGGGGAGAGTGAAAGCAACCTCAGGAAAGCTTTTGAGGAGGCTGAGAAGAATGCACCATCAATCATCTTCATTGATGAGATTGATTCAATTGCTCCCAAGAGAGAGAAGACGCATGGAGAAGTTGAGAGGAGGATTGTTTCACAGCTCTTGACACTCATGGATGGGCTAAAATCTCGTGCCCATGTGATTGTTATGGGGGCTACAAATCGTCCAAACAGTATTGATCCAGCTCTCAGAAGGTTTGGAAGATTTGATAGGGAAATAGATATTGGTGTGCCAGATGAAATTGGGCGTCTTGAGGTTGTCCGGATTCATACGAAGAACATGAAGCTTGCCGAAGATGTTGATTTGGAGAAGATAGCGAAGGATACACATGGTTATGTTGGTGCCGATCTAGCTGCTTTGTGTACTGAGGCTGCCCTTCAATGCATCAGAGAGAAGATGGATGTAATTGACTTGGAAGATGAGGAAATAGACGCTGAGATACTCAATTCAATGGCAGTTACAAACGAGCACTTCAAGACTGCTCTAGGCACAAGCAACCCATCTGCTCTTCGTGAAACCGTTGTTGAAGTGCCCAATGTTAGTTGGGAAGATATTGGTGGTCTTGAGAATGTTAAGCGTGAACTTCAAGAGACTGTTCAGTATCCTGTCGAGCATCCTGAGAAGTTCGAGAAATTTGGAATGTCACCCTCCAAGGGAGTTCTTTTCTATGGCCCTCCTGGATGTGGTAAAACTCTTCTCGCCAAAGCTATTGCCAATGAGTGTCAAGCAAACTTCATCAGTGTCAAGGGACCTGAATTGCTTACCATGTGGTTTGGAGAGAGTGAGGCCAATGTGCGGGAAATTTTTGACAAGGCCCGCGGATCTGCGCCATGTGTCCTGTTCTTTGATGAACTTGATTCCATTGCTACTCAGAGAGGTAGTAGCGTAGGTGATGCTGGGGGTGCTGCTGATAGGGTTTTGAACCAACTCCTCACAGAAATGGATGGAATGACTGCAAAGAAAACCGTTTTCATTATCGGGGCCACCAACAGACCTGATATTATAGACCCTGCACTTTTGCGTCCAGGCCGTCTGGATCAGTTGATTTACATTCCTCTCCCTGACGAGGAATCCCGATTTCAAATTTTCAAGTCTTGCTTGAGGAAGTCTCCAGTTTCCAAAGATGTGGACATCAGAGCCCTTGCTAAGTACACCCAAGGATTTAGTGGTGCTGACATAACAGAAATATGCCAGCGTGCTTGCAAATATGCCATTAGAGAGAATATTGAGAAGGATATTGAGAAGGAGAGGAGGAGAAATGAGAATCCTGAGGCAATGGAGGAGGATGTTGAGGATGAAATTGCAGAGATCAAGGCAGCTCATTTTGAGGAGTCGATGAAGTATGCTCGCAGGAGTGTTAGCGATGCTGATATCCGCAAGTACCAGGCATTTGCACAGACATTGCAGCAGTCGAGAGGGTTTGGAACAGAGTTCAGGTTTGCAGACAATCCTTCTGGCACAACTGCTGCAGCCGACCCTTTTGCAACTGCTGCTGCTGGGGCAGATGAAGATGACCTTTACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

807

Amino Acids

89.59

Weight (kDa)

5.12

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	30 - 111	1.4e-22	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	131 - 195	1.6e-11	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	245 - 374	1.4e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	397 - 440	5.1e-17	AAA+ lid domain
AAA	PF00004	518 - 651	1.6e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	673 - 713	1.5e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	107, 125
AccB1I	GGYRCC	1 cut(s)	1235
AccII	CGCG	3 cut(s)	59, 134, 1713
AccIII	TCCGGA	1 cut(s)	1155
AciI	CCGC	6 cut(s)	57, 80, 1690, 1711, 1713, 2269
AclWI	GGATC	5 cut(s)	55, 763, 1067, 1723, 1938
AcsI	RAATTY	4 cut(s)	558, 1526, 1695, 1977
AcuI	CTGAAG	2 cut(s)	6, 34
AcyI	GRCGYC	1 cut(s)	1141
AfaI	GTAC	5 cut(s)	344, 533, 1258, 2045, 2276
AfiI	CCNNNNNNNGG	9 cut(s)	97, 370, 728, 758, 784, 1547, 1577, 1689, 1960
AflIII	ACRYGT	1 cut(s)	242
AjnI	CCWGG	5 cut(s)	432, 751, 1570, 1918, 2277
AjuI	GAANNNNNNNTTGG	2 cut(s)	1101, 1133
AleI	CACNNNNGTG	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	1365
Alw26I	GTCTC	2 cut(s)	1478, 2007
AlwI	GGATC	5 cut(s)	55, 763, 1067, 1723, 1938
Ama87I	CYCGRG	2 cut(s)	65, 777
Aor13HI	TCCGGA	1 cut(s)	1155
AoxI	GGCC	6 cut(s)	438, 1564, 1680, 1707, 1875, 1921
ApeKI	GCWGC	9 cut(s)	1247, 1265, 1799, 2210, 2299, 2360, 2363, 2384, 2387
ApoI	RAATTY	4 cut(s)	558, 1526, 1695, 1977
AspLEI	GCGC	3 cut(s)	72, 136, 1723
AspS9I	GGNCC	6 cut(s)	746, 824, 1565, 1643, 1708, 1875
AsuHPI	GGTGA	4 cut(s)	314, 473, 1530, 1796
AvaI	CYCGRG	2 cut(s)	65, 777
AvaII	GGWCC	3 cut(s)	746, 824, 1643
AxyI	CCTNAGG	2 cut(s)	869, 2163
BaeGI	GKGCMC	2 cut(s)	1030, 1428
BanI	GGYRCC	1 cut(s)	1235
BanII	GRGCYC	1 cut(s)	2035
BauI	CACGAG	1 cut(s)	1023
BbsI	GAAGAC	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	1365
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	9 cut(s)	1234, 1252, 1786, 2222, 2311, 2347, 2371, 2374, 2375
BccI	CCATC	9 cut(s)	145, 191, 224, 643, 913, 1004, 1285, 1402, 1832
BceAI	ACGGC	1 cut(s)	1908
BcgI	CGANNNNNNTGC	4 cut(s)	1229, 1263, 2357, 2391
BciT130I	CCWGG	5 cut(s)	434, 753, 1572, 1920, 2279
BciVI	GTATCC	3 cut(s)	205, 1210, 1506
BcoDI	GTCTC	2 cut(s)	1478, 2007
BfaI	CTAG	2 cut(s)	1244, 1379
BfmI	CTRYAG	1 cut(s)	2361
BfuI	GTATCC	3 cut(s)	205, 1210, 1506
BglI	GCCNNNNNGGC	1 cut(s)	685
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	5 cut(s)	434, 753, 1572, 1920, 2279
Bme18I	GGWCC	3 cut(s)	746, 824, 1643
BmeT110I	CYCGRG	2 cut(s)	65, 777
BmgT120I	GGNCC	6 cut(s)	746, 824, 1565, 1643, 1708, 1875
BmiI	GGNNCC	4 cut(s)	576, 1237, 1644, 1876
BmrFI	CCNGG	5 cut(s)	434, 753, 1572, 1920, 2279
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	7 cut(s)	400, 697, 825, 1287, 1516, 1777, 2248
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	962
BplI	GAGNNNNNCTC	4 cut(s)	676, 708, 1987, 2019
BpmI	CTGGAG	4 cut(s)	146, 455, 735, 1989
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	3 cut(s)	1166, 1478, 2014
Bsa29I	ATCGAT	1 cut(s)	707
BsaAI	YACGTR	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	1141
BsaJI	CCNNGG	3 cut(s)	1545, 1711, 2050
BsaWI	WCCGGW	1 cut(s)	1155
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	9 cut(s)	97, 370, 728, 758, 784, 1547, 1577, 1689, 1960
Bse1I	ACTGG	4 cut(s)	400, 449, 802, 2006
Bse21I	CCTNAGG	2 cut(s)	869, 2163
Bse3DI	GCAATG	4 cut(s)	222, 1755, 2175, 2294
BseAI	TCCGGA	1 cut(s)	1155
BseBI	CCWGG	5 cut(s)	434, 753, 1572, 1920, 2279
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	1545, 1711, 2050
BseLI	CCNNNNNNNGG	9 cut(s)	97, 370, 728, 758, 784, 1547, 1577, 1689, 1960
BseMI	GCAATG	4 cut(s)	222, 1755, 2175, 2294
BseNI	ACTGG	4 cut(s)	400, 449, 802, 2006
BseSI	GKGCMC	2 cut(s)	1030, 1428
BseXI	GCAGC	9 cut(s)	1234, 1252, 1786, 2222, 2311, 2347, 2371, 2374, 2375
BseYI	CCCAGC	3 cut(s)	848, 1790, 2390
BsgI	GTGCAG	1 cut(s)	1890
Bsh1236I	CGCG	3 cut(s)	59, 134, 1713
BshFI	GGCC	6 cut(s)	440, 1566, 1682, 1709, 1877, 1923
BshNI	GGYRCC	1 cut(s)	1235
BshVI	ATCGAT	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	1365
BsiHKCI	CYCGRG	2 cut(s)	65, 777
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	2 cut(s)	59, 1656
BslI	CCNNNNNNNGG	9 cut(s)	97, 370, 728, 758, 784, 1547, 1577, 1689, 1960
BsmAI	GTCTC	2 cut(s)	1478, 2007
BsmFI	GGGAC	2 cut(s)	59, 1656
BsmI	GAATGC	2 cut(s)	803, 904
BsnI	GGCC	6 cut(s)	440, 1566, 1682, 1709, 1877, 1923
BsoBI	CYCGRG	2 cut(s)	65, 777
Bsp1286I	GDGCHC	4 cut(s)	1030, 1365, 1428, 2035
Bsp13I	TCCGGA	1 cut(s)	1155
Bsp143I	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
BspACI	CCGC	6 cut(s)	57, 80, 1690, 1711, 1713, 2269
BspANI	GGCC	6 cut(s)	440, 1566, 1682, 1709, 1877, 1923
BspDI	ATCGAT	1 cut(s)	707
BspEI	TCCGGA	1 cut(s)	1155
BspFNI	CGCG	3 cut(s)	59, 134, 1713
BspLI	GGNNCC	4 cut(s)	576, 1237, 1644, 1876
BspMAI	CTGCAG	1 cut(s)	2365
BspPI	GGATC	5 cut(s)	55, 763, 1067, 1723, 1938
BspQI	GCTCTTC	1 cut(s)	1407
BspT107I	GGYRCC	1 cut(s)	1235
BsrDI	GCAATG	4 cut(s)	222, 1755, 2175, 2294
BsrI	ACTGG	4 cut(s)	400, 449, 802, 2006
BssECI	CCNNGG	3 cut(s)	1545, 1711, 2050
BssMI	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
BssNI	GRCGYC	1 cut(s)	1141
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	2 cut(s)	1545, 2050
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	5 cut(s)	434, 753, 1572, 1920, 2279
Bst4CI	ACNGT	7 cut(s)	446, 536, 1067, 1414, 1489, 1861, 2417
Bst6I	CTCTTC	4 cut(s)	35, 473, 1407, 1593
BstACI	GRCGYC	1 cut(s)	1141
BstAPI	GCANNNNNTGC	1 cut(s)	2384
BstBAI	YACGTR	1 cut(s)	243
BstC8I	GCNNGC	6 cut(s)	1182, 1711, 2087, 2091, 2095, 2242
BstDSI	CCRYGG	1 cut(s)	1711
BstFNI	CGCG	3 cut(s)	59, 134, 1713
BstHHI	GCGC	3 cut(s)	72, 136, 1723
BstKTI	GATC	9 cut(s)	63, 261, 466, 758, 1075, 1243, 1718, 1933, 2205
BstMAI	GTCTC	2 cut(s)	1478, 2007
BstMBI	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
BstMWI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2384, 2393
BstNI	CCWGG	5 cut(s)	434, 753, 1572, 1920, 2279
BstSCI	CCNGG	5 cut(s)	432, 751, 1570, 1918, 2277
BstSFI	CTRYAG	1 cut(s)	2361
BstSLI	GKGCMC	2 cut(s)	1030, 1428
BstUI	CGCG	3 cut(s)	59, 134, 1713
BstV1I	GCAGC	9 cut(s)	1234, 1252, 1786, 2222, 2311, 2347, 2371, 2374, 2375
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	1715
BstXI	CCANNNNNNTGG	1 cut(s)	2020
BstYI	RGATCY	1 cut(s)	1715
Bsu15I	ATCGAT	1 cut(s)	707
Bsu36I	CCTNAGG	2 cut(s)	869, 2163
BsuI	GTATCC	3 cut(s)	205, 1210, 1506
BsuRI	GGCC	6 cut(s)	440, 1566, 1682, 1709, 1877, 1923
BsuTUI	ATCGAT	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	1711
BtgZI	GCGATG	1 cut(s)	2271
BtsIMutI	CAGTG	5 cut(s)	393, 456, 552, 680, 1639
Cac8I	GCNNGC	6 cut(s)	1182, 1711, 2087, 2091, 2095, 2242
CfoI	GCGC	3 cut(s)	72, 136, 1723
Cfr13I	GGNCC	6 cut(s)	746, 824, 1565, 1643, 1708, 1875
Cfr42I	CCGCGG	1 cut(s)	1714
ClaI	ATCGAT	1 cut(s)	707
CseI	GACGC	5 cut(s)	113, 967, 1130, 1334, 1904
Csp6I	GTAC	5 cut(s)	343, 532, 1257, 2044, 2275
CviAII	CATG	8 cut(s)	835, 962, 1006, 1031, 1174, 1223, 1660, 1725
CviQI	GTAC	5 cut(s)	343, 532, 1257, 2044, 2275
DpnI	GATC	9 cut(s)	62, 260, 465, 757, 1074, 1242, 1717, 1932, 2204
DpnII	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
DrdI	GACNNNNNNGTC	2 cut(s)	107, 125
DseDI	GACNNNNNNGTC	2 cut(s)	107, 125
Eam1104I	CTCTTC	4 cut(s)	35, 473, 1407, 1593
EarI	CTCTTC	4 cut(s)	35, 473, 1407, 1593
Eco130I	CCWWGG	2 cut(s)	1545, 2050
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	2035
Eco32I	GATATC	1 cut(s)	2266
Eco47I	GGWCC	3 cut(s)	746, 824, 1643
Eco57I	CTGAAG	2 cut(s)	6, 34
Eco81I	CCTNAGG	2 cut(s)	869, 2163
Eco88I	CYCGRG	2 cut(s)	65, 777
EcoO109I	RGGNCCY	1 cut(s)	1643
EcoRII	CCWGG	5 cut(s)	432, 751, 1570, 1918, 2277
EcoRV	GATATC	1 cut(s)	2266
EcoT14I	CCWWGG	2 cut(s)	1545, 2050
EcoT22I	ATGCAT	1 cut(s)	1280
EcoT38I	GRGCYC	1 cut(s)	2035
ErhI	CCWWGG	2 cut(s)	1545, 2050
FaeI	CATG	8 cut(s)	838, 965, 1009, 1034, 1177, 1226, 1663, 1728
FalI	AAGNNNNNCTT	5 cut(s)	32, 64, 1976, 2008, 2394
FaqI	GGGAC	2 cut(s)	59, 1656
FatI	CATG	8 cut(s)	834, 961, 1005, 1030, 1173, 1222, 1659, 1724
FauI	CCCGC	2 cut(s)	1683, 1718
FriOI	GRGCYC	1 cut(s)	2035
FspBI	CTAG	2 cut(s)	1244, 1379
GlaI	GCGC	3 cut(s)	71, 135, 1722
GsaI	CCCAGC	3 cut(s)	852, 1794, 2394
GsuI	CTGGAG	4 cut(s)	146, 455, 735, 1989
HaeIII	GGCC	6 cut(s)	440, 1566, 1682, 1709, 1877, 1923
HapII	CCGG	1 cut(s)	1156
HgaI	GACGC	5 cut(s)	113, 967, 1130, 1334, 1904
HhaI	GCGC	3 cut(s)	72, 136, 1723
Hin1I	GRCGYC	1 cut(s)	1141
Hin1II	CATG	8 cut(s)	838, 965, 1009, 1034, 1177, 1226, 1663, 1728
Hin6I	GCGC	3 cut(s)	70, 134, 1721
HinP1I	GCGC	3 cut(s)	70, 134, 1721
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	2 cut(s)	876, 1178
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	4 cut(s)	314, 473, 1530, 1796
Hpy166II	GTNNAC	8 cut(s)	100, 112, 322, 358, 1257, 1475, 2023, 2046
Hpy188I	TCNGA	6 cut(s)	25, 657, 1085, 1283, 1767, 2030
Hpy8I	GTNNAC	8 cut(s)	100, 112, 322, 358, 1257, 1475, 2023, 2046
Hpy99I	CGWCG	3 cut(s)	107, 131, 134
HpyCH4III	ACNGT	7 cut(s)	446, 536, 1067, 1414, 1489, 1861, 2417
HpyCH4IV	ACGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2384, 2393
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	1141
Hsp92II	CATG	8 cut(s)	838, 965, 1009, 1034, 1177, 1226, 1663, 1728
HspAI	GCGC	3 cut(s)	70, 134, 1721
Kpn2I	TCCGGA	1 cut(s)	1155
KspI	CCGCGG	1 cut(s)	1714
Kzo9I	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
LguI	GCTCTTC	1 cut(s)	1407
LmnI	GCTCC	6 cut(s)	141, 165, 282, 550, 574, 946
Lsp1109I	GCAGC	9 cut(s)	1234, 1252, 1786, 2222, 2311, 2347, 2371, 2374, 2375
LweI	GCATC	7 cut(s)	400, 697, 825, 1287, 1516, 1777, 2248
MaeI	CTAG	2 cut(s)	1244, 1379
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	391, 1351, 1536
MalI	GATC	9 cut(s)	62, 260, 465, 757, 1074, 1242, 1717, 1932, 2204
MboI	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	1 cut(s)	1715
MhlI	GDGCHC	4 cut(s)	1030, 1365, 1428, 2035
MlyI	GAGTC	3 cut(s)	20, 760, 2234
Mph1103I	ATGCAT	1 cut(s)	1280
MroI	TCCGGA	1 cut(s)	1155
MseI	TTAA	5 cut(s)	192, 504, 582, 605, 1467
MslI	CAYNNNNRTG	3 cut(s)	327, 1227, 1832
MspA1I	CMGCKG	1 cut(s)	1713
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	5 cut(s)	434, 753, 1572, 1920, 2279
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	2 cut(s)	803, 904
MvaI	CCWGG	5 cut(s)	434, 753, 1572, 1920, 2279
MvnI	CGCG	3 cut(s)	59, 134, 1713
MwoI	GCNNNNNNNGC	6 cut(s)	685, 694, 1244, 1796, 2384, 2393
NdeII	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
NlaIII	CATG	8 cut(s)	838, 965, 1009, 1034, 1177, 1226, 1663, 1728
NlaIV	GGNNCC	4 cut(s)	576, 1237, 1644, 1876
NmuCI	GTSAC	2 cut(s)	391, 1536
NsiI	ATGCAT	1 cut(s)	1280
OliI	CACNNNNGTG	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	1407
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 111
PctI	GAATGC	2 cut(s)	803, 904
PfeI	GAWTC	8 cut(s)	17, 85, 658, 932, 1159, 1751, 1964, 2158
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	3 cut(s)	432, 751, 1570
PleI	GAGTC	3 cut(s)	20, 760, 2233
PpsI	GAGTC	3 cut(s)	20, 760, 2233
Ppu21I	YACGTR	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	1643
Psp5II	RGGWCCY	1 cut(s)	1643
Psp6I	CCWGG	5 cut(s)	432, 751, 1570, 1918, 2277
PspFI	CCCAGC	3 cut(s)	848, 1790, 2390
PspGI	CCWGG	5 cut(s)	432, 751, 1570, 1918, 2277
PspN4I	GGNNCC	4 cut(s)	576, 1237, 1644, 1876
PspPI	GGNCC	6 cut(s)	746, 824, 1565, 1643, 1708, 1875
PspPPI	RGGWCCY	1 cut(s)	1643
PspXI	VCTCGAGB	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	2365
PsuI	RGATCY	1 cut(s)	1715
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	5 cut(s)	344, 533, 1258, 2045, 2276
RsaNI	GTAC	5 cut(s)	343, 532, 1257, 2044, 2275
RseI	CAYNNNNRTG	3 cut(s)	327, 1227, 1832
SacII	CCGCGG	1 cut(s)	1714
SapI	GCTCTTC	1 cut(s)	1407
SaqAI	TTAA	5 cut(s)	192, 504, 582, 605, 1467
Sau3AI	GATC	9 cut(s)	60, 258, 463, 755, 1072, 1240, 1715, 1930, 2202
Sau96I	GGNCC	6 cut(s)	746, 824, 1565, 1643, 1708, 1875
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	3 cut(s)	20, 760, 2234
ScrFI	CCNGG	5 cut(s)	434, 753, 1572, 1920, 2279
SduI	GDGCHC	4 cut(s)	1030, 1365, 1428, 2035
SfaNI	GCATC	7 cut(s)	400, 697, 825, 1287, 1516, 1777, 2248
SfcI	CTRYAG	1 cut(s)	2361
Sfr274I	CTCGAG	1 cut(s)	65
Sfr303I	CCGCGG	1 cut(s)	1714
SgrBI	CCGCGG	1 cut(s)	1714
SinI	GGWCC	3 cut(s)	746, 824, 1643
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	327, 1227, 1832
SmlI	CTYRAG	4 cut(s)	65, 1145, 1457, 1993
SmoI	CTYRAG	4 cut(s)	65, 1145, 1457, 1993
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	6 cut(s)	57, 80, 1690, 1711, 1713, 2269
SspI	AATATT	1 cut(s)	2119
SspMI	CTAG	2 cut(s)	1244, 1379
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	5 cut(s)	432, 751, 1570, 1918, 2277
StyI	CCWWGG	2 cut(s)	1545, 2050
TaaI	ACNGT	7 cut(s)	446, 536, 1067, 1414, 1489, 1861, 2417
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	6 cut(s)	66, 707, 1503, 1521, 2228, 2306
TaqII	GACCGA	1 cut(s)	20
TatI	WGTACW	3 cut(s)	531, 1256, 2043
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	8 cut(s)	17, 85, 658, 932, 1159, 1751, 1964, 2158
Tru1I	TTAA	5 cut(s)	192, 504, 582, 605, 1467
Tru9I	TTAA	5 cut(s)	192, 504, 582, 605, 1467
TscAI	CASTG	5 cut(s)	400, 456, 559, 687, 1639
TseFI	GTSAC	2 cut(s)	391, 1536
TseI	GCWGC	9 cut(s)	1247, 1265, 1799, 2210, 2299, 2360, 2363, 2384, 2387
Tsp45I	GTSAC	2 cut(s)	391, 1536
TspGWI	ACGGA	2 cut(s)	115, 360
TspRI	CASTG	5 cut(s)	400, 456, 559, 687, 1639
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	746, 824, 1643
XapI	RAATTY	4 cut(s)	558, 1526, 1695, 1977
XcmI	CCANNNNNNNNNTGG	2 cut(s)	170, 2057
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	2 cut(s)	1244, 1379
ZrmI	AGTACT	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.