Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

27391334 .. 27393415

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1225600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACCAACAAAACTGATCACTCTTCTGGCTTTAAGGTGACAAAGACCGACTTCGGTACAGCCATCCTTGAGCGCAAGAAGGCTGTAAATCGGCTTCTTGTCGATGATGCTATTGCTGTCTCCGACAACAACTCAGTGCTCTTTAATGGCGACACGATCCTAATAAGGGGAAAGAAAAGGAAGGACACTATGTGCATTGTTACTAATGATACTACATGTGAGGGACCAAAGATAAGGACGAATAAGGTTGTCAGGAGCAACCTGAGGGTTAGGCTTGGGGACGTTGTTTCAGTTTACCAGTGCGCTGATGTTAAGTATGGAAATCGAGTCCACATTCTTCCTGTGGACGACAGTATTGAAGGGGTCACTGGAAATATCTTTGATGCATATTTAAAACCTTATTTCTTCGAGAGCTTCCACCCGGTGAGGAAGGGTGATCTCTTCCTTGTGAGAAGAGGAATGAGGAGTGTAGAGTTCAAGGTTGTTGAAACTGACCCTGCTGAGCCCTACGTGGTTGCCCCCGACATTGAAATCTACTGTGAAAATAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

185

Amino Acids

20.71

Weight (kDa)

8.63

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	47 - 102	1.5e-11	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	123 - 178	8.1e-08	Cell division protein 48 (CDC48), domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	151
AdeI	CACNNNGTG	2 cut(s)	192, 424
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	359, 478, 488, 530
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	75, 305
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	49, 436, 446
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	507
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	97, 373
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	298, 373
Bse21I	CCTNAGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	3 cut(s)	147, 254, 492
BseNI	ACTGG	2 cut(s)	298, 373
BseRI	GAGGAG	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	237, 293
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	237, 293
Bsp1286I	GDGCHC	2 cut(s)	141, 507
Bsp143I	GATC	3 cut(s)	16, 156, 436
Bsp1720I	GCTNAGC	1 cut(s)	501
BspCNI	CTCAG	3 cut(s)	146, 255, 493
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	298, 373
BssMI	GATC	3 cut(s)	16, 156, 436
Bst4CI	ACNGT	2 cut(s)	353, 539
Bst6I	CTCTTC	3 cut(s)	28, 446, 448
BstBAI	YACGTR	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	133, 263, 501
BstF5I	GGATG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	75, 305
BstKTI	GATC	3 cut(s)	19, 159, 439
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	3 cut(s)	16, 156, 436
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	141, 305, 366
CfoI	GCGC	2 cut(s)	75, 305
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	7 cut(s)	30, 62, 83, 94, 274, 414, 505
CviKI_1	RGCY	7 cut(s)	30, 62, 83, 94, 274, 414, 505
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	3 cut(s)	133, 263, 501
DpnI	GATC	3 cut(s)	18, 158, 438
DpnII	GATC	3 cut(s)	16, 156, 436
DraI	TTTAAA	1 cut(s)	393
DraIII	CACNNNGTG	2 cut(s)	192, 424
Eam1104I	CTCTTC	3 cut(s)	28, 446, 448
EarI	CTCTTC	3 cut(s)	28, 446, 448
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	1 cut(s)	219
FaiI	YATR	4 cut(s)	191, 217, 318, 388
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	2 cut(s)	237, 293
FatI	CATG	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	16
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	507
GlaI	GCGC	2 cut(s)	74, 304
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	2 cut(s)	75, 305
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	2 cut(s)	73, 303
HinP1I	GCGC	2 cut(s)	73, 303
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	49, 436, 446
Hpy166II	GTNNAC	3 cut(s)	295, 331, 346
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	253, 409
Hpy8I	GTNNAC	3 cut(s)	295, 331, 346
HpyAV	CCTTC	4 cut(s)	73, 175, 353, 424
HpyCH4III	ACNGT	2 cut(s)	353, 539
HpyCH4IV	ACGT	2 cut(s)	282, 510
HpyCH4V	TGCA	2 cut(s)	195, 386
HpyF3I	CTNAG	3 cut(s)	133, 263, 501
HpySE526I	ACGT	2 cut(s)	282, 510
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	2 cut(s)	73, 303
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 156, 436
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	8 cut(s)	12, 238, 275, 311, 354, 354, 435, 510
LweI	GCATC	2 cut(s)	97, 373
MaeII	ACGT	2 cut(s)	282, 510
MaeIII	GTNAC	3 cut(s)	37, 199, 364
MalI	GATC	3 cut(s)	18, 158, 438
MboI	GATC	3 cut(s)	16, 156, 436
MboII	GAAGA	5 cut(s)	15, 329, 397, 433, 465
MhlI	GDGCHC	2 cut(s)	141, 507
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	214, 258, 420, 449, 456, 542
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	4 cut(s)	33, 144, 312, 392
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	422
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	3 cut(s)	16, 156, 436
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	37, 364
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	219
PciI	ACATGT	1 cut(s)	215
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	511
PscI	ACATGT	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	33, 144, 312, 392
Sau3AI	GATC	3 cut(s)	16, 156, 436
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	141, 507
SetI	ASST	8 cut(s)	39, 249, 264, 285, 400, 416, 483, 513
SfaNI	GCATC	2 cut(s)	97, 373
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	353, 539
TaiI	ACGT	2 cut(s)	285, 513
TaqI	TCGA	3 cut(s)	102, 325, 408
TaqII	GACCGA	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	33, 144, 312, 392
Tru9I	TTAA	4 cut(s)	33, 144, 312, 392
TscAI	CASTG	3 cut(s)	141, 305, 373
TseFI	GTSAC	2 cut(s)	37, 364
Tsp45I	GTSAC	2 cut(s)	37, 364
TspRI	CASTG	3 cut(s)	141, 305, 373
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.