Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033605.1

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1125

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ggggcagatttagctgcattgtgcactgaggctgcgcttcaatgcataagagagaatatggatgaaattgactgggaagatcaggagacattagatgctgcgatgcttggctctatgaaagttggaaatgagcactttcggattgctttgagagcaagcaacccttctgctcttcgcgaaacggctgtggaggtgccgaatgtgacttgggatgctatcgggggtctggagaaagtgaagagggaacttcaggagactgttcagtatccagttgagcatcctgagaagtttgagaaatatgggatgtcaccctcaaagggggttcttttctatggccctcctggttgtggtaagacccttttggccaaggctattgccaatgagtgtcaggcaaattttattagtatcaaggggcctgagttgcttactagtgggtttggagagagtgaggcgaatgtgagggaaattttcgacaaggctagagggtctgctccatgtgtcctcttttttgatgaactcgattccattgctactcagagaagtagtaatgctggaggtggtggtgctgctgatagggttttgaaccaactccttacagaaatggatggattgtctgctaagaaaactgtctttgttatcggggccaccaatagacctgacattatagaccctgcacttctgcgtccaggacgtctggaccaattgatttacatccctctccctgatgaggaatcccgctgtgaaatattcaaggcttgcttgaggaagtctccagtttccaaagacgtgaacatcagagctcttgcaaagaacactagaggatttagtggtgctgatatcacagaaatatgccagcgtgcttgcaaatatgccattagagagaacattgggaatgatatcaagagggagatgagcagaagtgagaatcgtgaagctatggaggaggatgaagtggcagagatcacggcagctcacttcgtggagtcgatgaagtatgctcgtagaagtgttggtgattccgatatccgcaaatacaaggcatacgctcagacattgcagcagtctagagggtttggaacagaccagttcaaaattgcagggagcggttctcatgctgctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

374

Amino Acids

40.96

Weight (kDa)

5.28

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	736, 1027, 1104
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	394, 465
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	691
AdeI	CACNNNGTG	1 cut(s)	979
AfiI	CCNNNNNNNGG	4 cut(s)	317, 318, 347, 727
AgsI	TTSAA	4 cut(s)	41, 583, 751, 1090
AhlI	ACTAGT	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	787
AjnI	CCWGG	2 cut(s)	340, 685
AluBI	AGCT	4 cut(s)	14, 800, 935, 971
AluI	AGCT	4 cut(s)	14, 800, 935, 971
Alw21I	GWGCWC	3 cut(s)	26, 135, 802
Alw26I	GTCTC	3 cut(s)	80, 248, 774
Alw44I	GTGCAC	1 cut(s)	22
AoxI	GGCC	4 cut(s)	334, 363, 413, 642
ApaLI	GTGCAC	1 cut(s)	22
ApeKI	GCWGC	7 cut(s)	14, 32, 98, 566, 968, 1057, 1115
ApoI	RAATTY	2 cut(s)	394, 465
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	4 cut(s)	335, 413, 642, 697
AsuHPI	GGTGA	2 cut(s)	300, 1025
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	802
Bbv12I	GWGCWC	3 cut(s)	26, 135, 802
BbvI	GCAGC	6 cut(s)	19, 85, 553, 980, 1069, 1102
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	2 cut(s)	198, 981
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	2 cut(s)	342, 687
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	80, 248, 774
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	4 cut(s)	429, 480, 816, 1065
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	7 cut(s)	15, 33, 99, 567, 969, 1058, 1116
BlsI	GCNGC	7 cut(s)	16, 34, 100, 568, 970, 1059, 1117
Bme1390I	CCNGG	2 cut(s)	342, 687
Bme18I	GGWCC	1 cut(s)	697
BmgBI	CACGTC	1 cut(s)	787
BmgT120I	GGNCC	4 cut(s)	335, 413, 642, 697
BmiI	GGNNCC	3 cut(s)	195, 414, 643
BmrFI	CCNGG	2 cut(s)	342, 687
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	4 cut(s)	85, 93, 202, 286
BmuI	ACTGGG	1 cut(s)	82
BplI	GAGNNNNNCTC	4 cut(s)	754, 786, 1093, 1125
BpmI	CTGGAG	3 cut(s)	248, 573, 756
BpuEI	CTTGAG	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 318, 347, 727
Bse1I	ACTGG	4 cut(s)	77, 269, 773, 1084
Bse3DI	GCAATG	2 cut(s)	525, 1052
Bse8I	GATNNNNATC	1 cut(s)	710
BseBI	CCWGG	2 cut(s)	342, 687
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	7 cut(s)	67, 217, 277, 309, 610, 711, 952
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	4 cut(s)	317, 318, 347, 727
BseMI	GCAATG	2 cut(s)	525, 1052
BseMII	CTCAG	5 cut(s)	18, 273, 408, 548, 1061
BseNI	ACTGG	4 cut(s)	77, 269, 773, 1084
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	6 cut(s)	19, 85, 553, 980, 1069, 1102
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	336, 365, 415, 644
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	3 cut(s)	26, 135, 802
BslI	CCNNNNNNNGG	4 cut(s)	317, 318, 347, 727
BsmAI	GTCTC	3 cut(s)	80, 248, 774
BsnI	GGCC	4 cut(s)	336, 365, 415, 644
Bsp1286I	GDGCHC	3 cut(s)	26, 135, 802
Bsp143I	GATC	2 cut(s)	79, 960
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	3 cut(s)	736, 1027, 1104
BspANI	GGCC	4 cut(s)	336, 365, 415, 644
BspCNI	CTCAG	5 cut(s)	19, 274, 409, 547, 1060
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	195, 414, 643
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	1104
BsrDI	GCAATG	2 cut(s)	525, 1052
BsrI	ACTGG	4 cut(s)	77, 269, 773, 1084
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	79, 960
BssNI	GRCGYC	1 cut(s)	691
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	342, 687
Bst4CI	ACNGT	2 cut(s)	259, 628
Bst6I	CTCTTC	2 cut(s)	177, 233
BstACI	GRCGYC	1 cut(s)	691
BstC8I	GCNNGC	5 cut(s)	157, 757, 854, 858, 862
BstDEI	CTNAG	6 cut(s)	27, 282, 417, 534, 618, 1047
BstF5I	GGATG	7 cut(s)	67, 217, 277, 309, 610, 711, 952
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	82, 963
BstMAI	GTCTC	3 cut(s)	80, 248, 774
BstMBI	GATC	2 cut(s)	79, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 152, 421
BstNI	CCWGG	2 cut(s)	342, 687
BstSCI	CCNGG	2 cut(s)	340, 685
BstSLI	GKGCMC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	6 cut(s)	19, 85, 553, 980, 1069, 1102
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	336, 365, 415, 644
BtgZI	GCGATG	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	787
BtsCI	GGATG	7 cut(s)	67, 217, 277, 309, 610, 711, 952
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	5 cut(s)	157, 757, 854, 858, 862
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	335, 413, 642, 697
CseI	GACGC	1 cut(s)	671
CviAII	CATG	2 cut(s)	495, 1112
DdeI	CTNAG	6 cut(s)	27, 282, 417, 534, 618, 1047
DpnI	GATC	2 cut(s)	81, 962
DpnII	GATC	2 cut(s)	79, 960
DraIII	CACNNNGTG	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	177, 233
EarI	CTCTTC	2 cut(s)	177, 233
Ecl136II	GAGCTC	1 cut(s)	800
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	802
Eco32I	GATATC	3 cut(s)	838, 898, 1024
Eco47I	GGWCC	1 cut(s)	697
Eco53kI	GAGCTC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	340, 685
EcoRV	GATATC	3 cut(s)	838, 898, 1024
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	498, 1115
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 743, 775
FatI	CATG	2 cut(s)	494, 1111
FauI	CCCGC	1 cut(s)	743
Fnu4HI	GCNGC	7 cut(s)	15, 33, 99, 567, 969, 1058, 1116
FokI	GGATG	7 cut(s)	74, 224, 264, 316, 617, 698, 959
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	7 cut(s)	15, 33, 99, 567, 969, 1058, 1116
FspBI	CTAG	4 cut(s)	429, 480, 816, 1065
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	7 cut(s)	15, 33, 99, 567, 969, 1058, 1116
GsuI	CTGGAG	3 cut(s)	248, 573, 756
HaeIII	GGCC	4 cut(s)	336, 365, 415, 644
HgaI	GACGC	1 cut(s)	671
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	2 cut(s)	498, 1115
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	5 cut(s)	521, 731, 925, 983, 1016
HphI	GGTGA	2 cut(s)	300, 1025
Hpy166II	GTNNAC	2 cut(s)	24, 790
Hpy188I	TCNGA	6 cut(s)	141, 537, 797, 1021, 1050, 1124
Hpy188III	TCNNGA	9 cut(s)	83, 176, 227, 251, 281, 695, 901, 929, 1065
Hpy8I	GTNNAC	2 cut(s)	24, 790
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	259, 628
HpyCH4IV	ACGT	2 cut(s)	691, 786
HpyCH4V	TGCA	8 cut(s)	17, 24, 45, 674, 806, 864, 1057, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 152, 421
HpyF3I	CTNAG	6 cut(s)	27, 282, 417, 534, 618, 1047
HpySE526I	ACGT	2 cut(s)	691, 786
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	2 cut(s)	498, 1115
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	79, 960
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	496, 1101
Lsp1109I	GCAGC	6 cut(s)	19, 85, 553, 980, 1069, 1102
LweI	GCATC	4 cut(s)	85, 93, 202, 286
MaeI	CTAG	4 cut(s)	429, 480, 816, 1065
MaeII	ACGT	2 cut(s)	691, 786
MaeIII	GTNAC	2 cut(s)	202, 306
MalI	GATC	2 cut(s)	81, 962
MbiI	CCGCTC	1 cut(s)	1104
MboI	GATC	2 cut(s)	79, 960
MboII	GAAGA	3 cut(s)	89, 164, 250
MfeI	CAATTG	1 cut(s)	701
MhlI	GDGCHC	3 cut(s)	26, 135, 802
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	5 cut(s)	66, 394, 465, 701, 1092
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	992
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	738
MspR9I	CCNGG	2 cut(s)	342, 687
MunI	CAATTG	1 cut(s)	701
MvaI	CCWGG	2 cut(s)	342, 687
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	11, 152, 421
NdeII	GATC	2 cut(s)	79, 960
NlaIII	CATG	2 cut(s)	498, 1115
NlaIV	GGNNCC	3 cut(s)	195, 414, 643
NmuCI	GTSAC	2 cut(s)	202, 306
NruI	TCGCGA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	4 cut(s)	521, 731, 925, 1016
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	7 cut(s)	16, 34, 100, 568, 970, 1059, 1117
PleI	GAGTC	1 cut(s)	991
PpsI	GAGTC	1 cut(s)	991
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	2 cut(s)	340, 685
PspGI	CCWGG	2 cut(s)	340, 685
PspN4I	GGNNCC	3 cut(s)	195, 414, 643
PspPI	GGNCC	4 cut(s)	335, 413, 642, 697
RruI	TCGCGA	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	802
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	7 cut(s)	15, 33, 99, 567, 969, 1058, 1116
Sau3AI	GATC	2 cut(s)	79, 960
Sau96I	GGNCC	4 cut(s)	335, 413, 642, 697
SchI	GAGTC	1 cut(s)	992
ScrFI	CCNGG	2 cut(s)	342, 687
SduI	GDGCHC	3 cut(s)	26, 135, 802
SetI	ASST	9 cut(s)	16, 195, 559, 658, 694, 789, 802, 937, 973
SfaNI	GCATC	4 cut(s)	85, 93, 202, 286
SinI	GGWCC	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	5 cut(s)	66, 394, 465, 701, 1092
SsiI	CCGC	3 cut(s)	736, 1027, 1104
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	4 cut(s)	429, 480, 816, 1065
SstI	GAGCTC	1 cut(s)	802
StyD4I	CCNGG	2 cut(s)	340, 685
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	259, 628
TaiI	ACGT	2 cut(s)	694, 789
TaqI	TCGA	3 cut(s)	471, 519, 986
TasI	AATT	5 cut(s)	66, 394, 465, 701, 1092
TfiI	GAWTC	4 cut(s)	521, 731, 925, 1016
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	202, 306
TseI	GCWGC	7 cut(s)	14, 32, 98, 566, 968, 1057, 1115
Tsp45I	GTSAC	2 cut(s)	202, 306
TspDTI	ATGAA	5 cut(s)	78, 131, 528, 963, 1004
TspRI	CASTG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	2 cut(s)	394, 465
XbaI	TCTAGA	1 cut(s)	1064
XspI	CTAG	4 cut(s)	429, 480, 816, 1065
ZraI	GACGTC	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.