Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

14287124 .. 14288489

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTGCCTGCTCTGCCAAGATATGGATTTTCTCCTCTTTAGCTATCTCCCTACACCCTCCACCCAACTTAACAAAAATGAAGGGAATGAAATTACTCACATGCTTATTATTCATATTATATGCACTCGTGCCTTTCAAGCTCGGGAAAGGCAGAGTTGGTTCAAATATTGCTCATCGGAGCCCAAAAAGTTGTGCAACACCGGTGATTGGAAGATCCCAGCAGCCCTCCTCTTGACCAAAACCATGTTGCAGGTAACATTTGCTTTGATTCTTATTCTTCATGCTTTTTTTGTTGGGGCCACTAACAGACCTGACGTTAGAGACCCAGCACCTTTGCGTCCAGGGCGTCTGGTTCAGTTGATTTACATCCCTCTCCCTAATGAGGAATTTTGTTATCAAGCAATCAAGTCTTGCTTGAGGAAGTCTCCAGTTTCCAAAAGATGTGGTGCGGACATAACTGAAACATGCCAGCATGCTTGCAAATATGCGATTAGAGAGAACATTGGCAAGGATATTGAGCGGGAAAGTGGGAGAAATGAGAACCCTGAGGCAATGGAGGAGGTCGCTGTTGATATGTACTTTACAATTAGGAAATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

201

Amino Acids

22.97

Weight (kDa)

8.31

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	520
AciI	CCGC	2 cut(s)	449, 520
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	386, 593
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	22, 207, 382
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	137, 163
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	42, 140
AluI	AGCT	2 cut(s)	42, 140
Alw26I	GTCTC	2 cut(s)	315, 429
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	386, 593
AsiGI	ACCGGT	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	141
AxyI	CCTNAGG	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	315, 429
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	180, 298
BmrFI	CCNGG	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 207, 382
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	3 cut(s)	22, 207, 382
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	3 cut(s)	23, 218, 572
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	217, 325
BshFI	GGCC	1 cut(s)	299
BshTI	ACCGGT	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	22, 207, 382
BsmAI	GTCTC	2 cut(s)	315, 429
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	449, 520
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	180, 298
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	315
BsrBI	CCGCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	346
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	346
BstC8I	GCNNGC	4 cut(s)	8, 470, 474, 478
BstDEI	CTNAG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	315, 429
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 137, 343
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	3 cut(s)	103, 468, 476
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	8, 470, 474, 478
CciI	TCATGA	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	297
CseI	GACGC	2 cut(s)	326, 335
Csp6I	GTAC	1 cut(s)	577
CspAI	ACCGGT	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	6 cut(s)	100, 244, 281, 465, 473, 600
CviJI	RGCY	5 cut(s)	42, 140, 181, 224, 299
CviKI_1	RGCY	5 cut(s)	42, 140, 181, 224, 299
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	6 cut(s)	103, 247, 284, 468, 476, 603
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	6 cut(s)	99, 243, 280, 464, 472, 599
FauI	CCCGC	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	2 cut(s)	221, 329
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	2 cut(s)	326, 335
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	6 cut(s)	103, 247, 284, 468, 476, 603
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	143, 232, 600
HpyAV	CCTTC	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	123, 195, 250, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 137, 343
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	6 cut(s)	103, 247, 284, 468, 476, 603
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	223, 269
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	90, 386, 585, 593
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	12, 137, 343
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	6 cut(s)	103, 247, 284, 468, 476, 603
NlaIV	GGNNCC	2 cut(s)	180, 298
NspI	RCATGY	3 cut(s)	103, 468, 476
PaeI	GCATGC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	2 cut(s)	217, 325
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	180, 298
PspPI	GGNCC	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	44, 142, 255, 313, 318, 334, 564
SgrAI	CRCCGGYG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	4 cut(s)	90, 386, 585, 593
SsiI	CCGC	2 cut(s)	449, 520
SspI	AATATT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	340
TaiI	ACGT	1 cut(s)	318
TasI	AATT	4 cut(s)	90, 386, 585, 593
TatI	WGTACW	1 cut(s)	576
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	93, 101, 102, 269, 588
Van91I	CCANNNNNTGG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	386, 593
XceI	RCATGY	3 cut(s)	103, 468, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.