Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

27378862 .. 27380072

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1225300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGCTTGCTAAAGATGTTGACCTAGAAAAGATAGCTAAGGACACACATGGTTATGTTGGTGCGGATCTTGCTGCTTTGTGTACTAAGGGTTCACTTCAATGCATTAGAGAGAAGATGGATGTGATCAACTTAGAAGATGAGGAAATAGATGCTGAGATTATTAATTTAATGGCAGTTATAAACCATCACCTAAAGACTGTTCTTAGCACAAGCAACCCTTCTGCCCTTCGTGAAACAGTTGTTGAAGTACCGAATGTTAGTTGGGAAGATATTGGAGGTCTCAAAAGTGTTAAGAGGGAACTTCAAGAGACGGTTCAATATCCTTTAGAGCATCTGGAGAAATTTGAGAAATTTGGAATGTCTCCTTCAAAGGGACAATTGCCAATGAGTGTCAAGCAAACTTCATTAGTACAAAGGGGCTTGAATTGCTTACACGAGGCCAATGTACGTGAAATCTTTGACAAAGCCCGTGGGTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGATTCCATTGTGACTCAGAGAGGGAGTAGTGTAGGTGATGCTAGGGGTGCTGCTGATAGGGTTTTGAATCAACTTCTTACAGAAATAGATGGAATGTCTACAAAGAAAATTGTTTTCATTATCAAGGCCACCAACAGGCCAGACATTATAGACCCTGCACTTCTGCGTCCAGGTCATCTAGATCAGTTGATTTACATTCCTCTCCCTAATGAGAAATCTCACTATCAAGTATTCCAGTCTTGCTTAAGGAATTCTCCAGTTTTTAAAGATGTGGACATCAGAGCCCTTGCCAAGTACACTGCTGGTTTTAGTGGTGCGGATATAACGGAAATATGCCAGCGTGCTTGCAAATATGCAATCAGAGAGAACATTGAAAAGGATATTGAGAGGGAGAGGAGGAGAAATCAGAATCTTAAGGCAATGGAAGATGACGTTATTGATGAAGTAGCAGATATCAAGGCAGCTCATTTTGAGGAATCGATGAAGTATGCTCGTAGGAGTGTTAGTGATGCTGATATCTGCAAATACCAGGCATTTGCACAGACACTGCAGCAGTCAAGAGAGTTTGGAATAGATTTCAGGTTTGCAGACGATGCTTCCAACGGACGTGTTACTTCTGGGGCTGGTGAAGATGACCTTTACAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

387

Amino Acids

43.27

Weight (kDa)

5.3

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_3	PF17862	6 - 49	4.1e-14	AAA+ lid domain
AAA	PF00004	146 - 238	9.7e-22	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	260 - 299	6.5e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	2 cut(s)	65, 827
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	344, 353, 760
AfaI	GTAC	5 cut(s)	85, 252, 414, 450, 806
AfiI	CCNNNNNNNGG	2 cut(s)	374, 645
AflII	CTTAAG	2 cut(s)	754, 923
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	8 cut(s)	101, 248, 308, 320, 372, 427, 577, 884
AjiI	CACGTC	1 cut(s)	1118
AjnI	CCWGG	2 cut(s)	679, 1038
AluBI	AGCT	3 cut(s)	7, 38, 974
AluI	AGCT	3 cut(s)	7, 38, 974
Alw26I	GTCTC	3 cut(s)	287, 305, 369
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	1057
AoxI	GGCC	3 cut(s)	441, 636, 647
ApeKI	GCWGC	4 cut(s)	74, 560, 971, 1060
ApoI	RAATTY	3 cut(s)	344, 353, 760
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	182, 557, 1148
BanII	GRGCYC	1 cut(s)	796
BauI	CACGAG	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	61, 547, 983, 1072
BccI	CCATC	3 cut(s)	112, 195, 593
BciT130I	CCWGG	2 cut(s)	681, 1040
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	3 cut(s)	287, 305, 369
BfaI	CTAG	3 cut(s)	26, 552, 689
BfmI	CTRYAG	1 cut(s)	1058
BfrI	CTTAAG	2 cut(s)	754, 923
BisI	GCNGC	4 cut(s)	75, 561, 972, 1061
BlsI	GCNGC	4 cut(s)	76, 562, 973, 1062
Bme1390I	CCNGG	2 cut(s)	681, 1040
BmgBI	CACGTC	1 cut(s)	1118
BmrFI	CCNGG	2 cut(s)	681, 1040
BmsI	GCATC	5 cut(s)	142, 343, 538, 1009, 1093
BpmI	CTGGAG	2 cut(s)	359, 750
Bpu10I	CCTNAGC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	989
BsaAI	YACGTR	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 645
Bse1I	ACTGG	2 cut(s)	745, 767
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	681, 1040
BseCI	ATCGAT	1 cut(s)	989
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	374, 645
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	2 cut(s)	147, 539
BseNI	ACTGG	2 cut(s)	745, 767
BseRI	GAGGAG	2 cut(s)	919, 922
BseXI	GCAGC	4 cut(s)	61, 547, 983, 1072
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	443, 638, 649
BshVI	ATCGAT	1 cut(s)	989
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	374, 645
BsmAI	GTCTC	3 cut(s)	287, 305, 369
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	443, 638, 649
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	67, 126, 691
BspACI	CCGC	2 cut(s)	65, 827
BspANI	GGCC	3 cut(s)	443, 638, 649
BspCNI	CTCAG	2 cut(s)	148, 538
BspDI	ATCGAT	1 cut(s)	989
BspMAI	CTGCAG	1 cut(s)	1062
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	2 cut(s)	754, 923
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	745, 767
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	3 cut(s)	67, 126, 691
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	681, 1040
Bst4CI	ACNGT	3 cut(s)	202, 241, 316
BstAFI	CTTAAG	2 cut(s)	754, 923
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	4 cut(s)	9, 848, 852, 856
BstDEI	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 525
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	70, 129, 694
BstMAI	GTCTC	3 cut(s)	287, 305, 369
BstMBI	GATC	3 cut(s)	67, 126, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 429, 557, 1103
BstNI	CCWGG	2 cut(s)	681, 1040
BstSCI	CCNGG	2 cut(s)	679, 1038
BstSFI	CTRYAG	1 cut(s)	1058
BstV1I	GCAGC	4 cut(s)	61, 547, 983, 1072
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	989
BsuRI	GGCC	3 cut(s)	443, 638, 649
BsuTUI	ATCGAT	1 cut(s)	989
BtgI	CCRYGG	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	1118
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	2 cut(s)	807, 1055
BtsIMutI	CAGTG	2 cut(s)	807, 1055
Cac8I	GCNNGC	4 cut(s)	9, 848, 852, 856
CaiI	CAGNNNCTG	1 cut(s)	1057
ClaI	ATCGAT	1 cut(s)	989
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	5 cut(s)	84, 251, 413, 449, 805
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	2 cut(s)	50, 486
CviQI	GTAC	5 cut(s)	84, 251, 413, 449, 805
DdeI	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 525
DpnI	GATC	3 cut(s)	69, 128, 693
DpnII	GATC	3 cut(s)	67, 126, 691
DraI	TTTAAA	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	796
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	2 cut(s)	964, 1027
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	2 cut(s)	679, 1038
EcoRV	GATATC	2 cut(s)	964, 1027
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	2 cut(s)	53, 489
FalI	AAGNNNNNCTT	3 cut(s)	205, 237, 1131
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	49, 485
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	4 cut(s)	75, 561, 972, 1061
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	4 cut(s)	75, 561, 972, 1061
FspBI	CTAG	3 cut(s)	26, 552, 689
GluI	GCNGC	4 cut(s)	75, 561, 972, 1061
GsuI	CTGGAG	2 cut(s)	359, 750
HaeIII	GGCC	3 cut(s)	443, 638, 649
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	2 cut(s)	53, 489
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	5 cut(s)	512, 523, 577, 919, 986
HphI	GGTGA	3 cut(s)	182, 557, 1148
Hpy166II	GTNNAC	6 cut(s)	22, 84, 95, 609, 784, 807
Hpy188I	TCNGA	4 cut(s)	528, 791, 872, 918
Hpy188III	TCNNGA	5 cut(s)	233, 308, 338, 689, 1068
Hpy8I	GTNNAC	6 cut(s)	22, 84, 95, 609, 784, 807
HpyAV	CCTTC	3 cut(s)	231, 239, 378
HpyCH4III	ACNGT	3 cut(s)	202, 241, 316
HpyCH4IV	ACGT	3 cut(s)	451, 942, 1117
HpyCH4V	TGCA	8 cut(s)	105, 668, 858, 866, 1032, 1049, 1060, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 429, 557, 1103
HpyF3I	CTNAG	6 cut(s)	39, 87, 133, 156, 206, 525
HpySE526I	ACGT	3 cut(s)	451, 942, 1117
Hsp92II	CATG	2 cut(s)	53, 489
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	67, 126, 691
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	4 cut(s)	61, 547, 983, 1072
LweI	GCATC	5 cut(s)	142, 343, 538, 1009, 1093
MaeI	CTAG	3 cut(s)	26, 552, 689
MaeII	ACGT	3 cut(s)	451, 942, 1117
MaeIII	GTNAC	2 cut(s)	520, 1120
MalI	GATC	3 cut(s)	69, 128, 693
MboI	GATC	3 cut(s)	67, 126, 691
MboII	GAAGA	5 cut(s)	127, 149, 281, 947, 1151
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	7 cut(s)	166, 344, 353, 380, 427, 618, 760
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	1134
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	6 cut(s)	165, 170, 294, 755, 774, 924
MslI	CAYNNNNRTG	2 cut(s)	54, 100
MspCI	CTTAAG	2 cut(s)	754, 923
MspR9I	CCNGG	2 cut(s)	681, 1040
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	681, 1040
MwoI	GCNNNNNNNGC	4 cut(s)	71, 429, 557, 1103
NdeII	GATC	3 cut(s)	67, 126, 691
NlaIII	CATG	2 cut(s)	53, 489
NmuCI	GTSAC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	107
PfeI	GAWTC	4 cut(s)	512, 577, 919, 986
PkrI	GCNGC	4 cut(s)	76, 562, 973, 1062
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	679, 1038
PspGI	CCWGG	2 cut(s)	679, 1038
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
PstI	CTGCAG	1 cut(s)	1062
PstNI	CAGNNNCTG	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	5 cut(s)	85, 252, 414, 450, 806
RsaNI	GTAC	5 cut(s)	84, 251, 413, 449, 805
RseI	CAYNNNNRTG	2 cut(s)	54, 100
SaqAI	TTAA	6 cut(s)	165, 170, 294, 755, 774, 924
SatI	GCNGC	4 cut(s)	75, 561, 972, 1061
Sau3AI	GATC	3 cut(s)	67, 126, 691
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	681, 1040
SduI	GDGCHC	1 cut(s)	796
SfaNI	GCATC	5 cut(s)	142, 343, 538, 1009, 1093
SfcI	CTRYAG	1 cut(s)	1058
SmiMI	CAYNNNNRTG	2 cut(s)	54, 100
SmlI	CTYRAG	2 cut(s)	754, 923
SmoI	CTYRAG	2 cut(s)	754, 923
Sse9I	AATT	7 cut(s)	166, 344, 353, 380, 427, 618, 760
SsiI	CCGC	2 cut(s)	65, 827
SspMI	CTAG	3 cut(s)	26, 552, 689
StyD4I	CCNGG	2 cut(s)	679, 1038
TaaI	ACNGT	3 cut(s)	202, 241, 316
TaiI	ACGT	3 cut(s)	454, 945, 1120
TaqI	TCGA	1 cut(s)	989
TasI	AATT	7 cut(s)	166, 344, 353, 380, 427, 618, 760
TatI	WGTACW	3 cut(s)	83, 412, 804
TfiI	GAWTC	4 cut(s)	512, 577, 919, 986
Tru1I	TTAA	6 cut(s)	165, 170, 294, 755, 774, 924
Tru9I	TTAA	6 cut(s)	165, 170, 294, 755, 774, 924
TscAI	CASTG	2 cut(s)	814, 1062
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	4 cut(s)	74, 560, 971, 1060
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	6 cut(s)	17, 396, 519, 616, 966, 1007
TspGWI	ACGGA	2 cut(s)	851, 1128
TspRI	CASTG	2 cut(s)	814, 1062
Vha464I	CTTAAG	2 cut(s)	754, 923
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	3 cut(s)	344, 353, 760
XbaI	TCTAGA	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	608
XspI	CTAG	3 cut(s)	26, 552, 689
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.