Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

47282907 .. 47284868

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGGCTCTCCAATCTGCTCTGCCATTTGAAATGTACAACCAATTCGCCGATCAATCTTCCAATTCCAATAAGGCCACAAAGAGGGACTTCAGCAATGTCCACGGTTCCGATGATGGCGATGGCATTGGCGACGCAATCTTGGTCAATGCAATGAAAAGAATCAAGCTCTCATCAGATAATGGTGACTCATCTCAGATGAAGACGAAGAAGAAGGAAATTGGGTATGAAGACGTAGGTGGTGTGAGGAAGCAGATGGCTCAGATTCGTGAGTTAGTGGAGCTTCCATTGAAGCAACCCAAGTTGTTTAAGTTCATTGGAGTGAAGCCTCCAAAGGGTATTCTTCTATACGGCCCCCCTGGCTCGGGCAAGACTCTGATTGCCCGAGCCCTCGCGAACGAGACGGGGGCCTTGTTTTTGTGCATTAACGGGCCGGAGATCATGTCGAAAATGGCTGGGGAGAGTGAGAGTAATCTAAGGAAGGTTTTCGAGGAAGCGGAGAAGAATGCACCGTCTATTGTGTTTATAGATGAGATTGACTCAATTGCTCCGAAGAGAGAGAAGAGTAATGGGGAAGTTGAGAGGAGGATTGTTTCACAGCTCTTGACACTCATGGATGGTATGAAGTCGAAAGGGCGTGTGATTGTTATTGGGGCCACGAATCGGCCTAATAGTATTGACCCGGCTCTTAGAAGGTGTGGAAGATTTGATAGGGAGATAGATATTGGTGTTCCTGATGAGGCCGGGCGGCTTGAGGTGCTTCGAATCCATACCAAGAACATGAAGCTTGGTGAGGATGTGGAGTTGGAAAAGATAGCCAAGGAGACACATGGGTATGTTGGGGCAGATTTAGCTGCATTGTGCACTGAGGCTGCGCTTCAATGCATAAGAGAGAATTTGGATGAAATTGACTGGGAAGATCAGGAGACATTAGATGCTGCGATGCTTGGCTCTATGAAAGTTGGAAATGAGCACTTTCGGATTGCTTTGCGAGCAAGCAACCCTTCTGCTCTTCGCGAAACGGCTGTGGAGGTGCCGAATGTGACTTGGGATGCTATCGGGGGTCTGGAGAAAGTGAAGAGGGAACTTCAGGAGACTGTTCAGTATCCAGTTGAGCGTCCTGAGAAGTTTGATAAATATGGGATGTCACCCTCAAAGGGGGTTCTTTTCTATGGCCCTCCTGGTTGTGGTAAGACCCTTTTGGCCAAGGCTATTGCCAATGAATGTCAGGCAAATTTTATTAGTATCAAGGGGCCTGAGTTGCTTACTAGTGGGTTTGGAGAGAGTGAGGCGAATGTGAGGGAAATTTTCGACAAGGCTAGAGGGTCTGCTCCCTGTGTCCTCTTTTTTGATGAACTCGATTCCATTGCTACTCAGAGAAGTAGTAATGCTGGAGGTGGTGGTGCAGCTGATAGGGTTTTGAACCAACTCCTTACGGAAATGGATGGATTGTCTGCTAAGAAAACTGTCTTTGTTATCGGGGCCACCAATAGACCTGACATTATAGACCCTGCACTTCTGCGTCCAGGACGTCTGGACCAATTGATTTACATCCCTCTCCCTGATGAGGAATCCCGCTGTGAAATATTCAAGGCTTGCTTGAGGAAGTCTCCAGTTTCCAAAGATGTGAACATAAGAGCTCTTGCAAAGAACACTAGAGGATTTAGTGGTGCTGATATCACAGAAATATGCCAGCGTGCTTGCAAATATGCCATTAGAGAGAACATTGGGAATGATATCAAGAGGGAGATGAGCAAAAGTGAGAATTGCGAAGCTATGGAGGAGGATGAAGTGGCAGAGATCACGGCAGCTCACTTCGTGGAGTCGATGAAGTATGCTCGTAGAAGTGTTGGTGATTCCGATATCCGCAAATACAAGGCATACGCTCAGACATTGCGGCAGTCTAGAGGGTTTGGAACAGACCAGTTCAAAATTGCAGGGAGCGGTTCTCATGCTGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

653

Amino Acids

71.61

Weight (kDa)

5.98

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	112 - 186	5.6e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	113 - 242	1.2e-48	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	265 - 308	1.7e-17	AAA+ lid domain
RuvB_N	PF05496	354 - 423	4.5e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	387 - 519	2.9e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	541 - 577	9.8e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1531
AccB1I	GGYRCC	1 cut(s)	1030
AccBSI	CCGCTC	1 cut(s)	1941
AccII	CGCG	2 cut(s)	392, 1014
AciI	CCGC	6 cut(s)	494, 745, 1573, 1864, 1894, 1941
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	3 cut(s)	892, 1231, 1302
AcuI	CTGAAG	2 cut(s)	73, 1070
AcyI	GRCGYC	1 cut(s)	1528
AdeI	CACNNNGTG	1 cut(s)	1816
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	9 cut(s)	81, 332, 361, 362, 660, 1154, 1155, 1184, 1564
AgsI	TTSAA	6 cut(s)	29, 289, 878, 1420, 1588, 1927
AhlI	ACTAGT	1 cut(s)	1265
AjnI	CCWGG	3 cut(s)	355, 1177, 1522
AluBI	AGCT	9 cut(s)	166, 280, 598, 784, 851, 1406, 1637, 1772, 1808
AluI	AGCT	9 cut(s)	166, 280, 598, 784, 851, 1406, 1637, 1772, 1808
Alw21I	GWGCWC	3 cut(s)	863, 972, 1639
Alw26I	GTCTC	5 cut(s)	392, 815, 917, 1085, 1611
Alw44I	GTGCAC	1 cut(s)	859
Ama87I	CYCGRG	2 cut(s)	361, 381
ApaLI	GTGCAC	1 cut(s)	859
ApeKI	GCWGC	6 cut(s)	851, 869, 935, 1403, 1805, 1952
ApoI	RAATTY	3 cut(s)	892, 1231, 1302
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	8 cut(s)	350, 405, 428, 651, 1172, 1250, 1479, 1534
AsuC2I	CCSGG	2 cut(s)	680, 742
AsuHPI	GGTGA	4 cut(s)	194, 800, 1137, 1862
AsuII	TTCGAA	1 cut(s)	760
AvaI	CYCGRG	2 cut(s)	361, 381
AvaII	GGWCC	1 cut(s)	1534
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	1202
BanI	GGYRCC	1 cut(s)	1030
BanII	GRGCYC	2 cut(s)	388, 1639
BbsI	GAAGAC	2 cut(s)	206, 234
Bbv12I	GWGCWC	3 cut(s)	863, 972, 1639
BbvI	GCAGC	6 cut(s)	838, 856, 922, 1415, 1817, 1939
BccI	CCATC	5 cut(s)	107, 113, 247, 608, 1436
BceAI	ACGGC	3 cut(s)	364, 1035, 1818
BcgI	CGANNNNNNTGC	2 cut(s)	1346, 1380
BciT130I	CCWGG	3 cut(s)	357, 1179, 1524
BciVI	GTATCC	1 cut(s)	1113
BcnI	CCSGG	2 cut(s)	680, 742
BcoDI	GTCTC	5 cut(s)	392, 815, 917, 1085, 1611
BcuI	ACTAGT	1 cut(s)	1265
BfaI	CTAG	4 cut(s)	1266, 1317, 1653, 1902
BfuI	GTATCC	1 cut(s)	1113
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	8 cut(s)	746, 852, 870, 936, 1404, 1806, 1895, 1953
BlsI	GCNGC	8 cut(s)	747, 853, 871, 937, 1405, 1807, 1896, 1954
Bme1390I	CCNGG	5 cut(s)	357, 680, 742, 1179, 1524
Bme18I	GGWCC	1 cut(s)	1534
BmeT110I	CYCGRG	2 cut(s)	361, 381
BmgT120I	GGNCC	8 cut(s)	350, 405, 428, 651, 1172, 1250, 1479, 1534
BmiI	GGNNCC	7 cut(s)	106, 352, 406, 652, 1032, 1251, 1480
BmrFI	CCNGG	5 cut(s)	357, 680, 742, 1179, 1524
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	3 cut(s)	922, 930, 1039
BmuI	ACTGGG	1 cut(s)	919
BpiI	GAAGAC	2 cut(s)	206, 234
BplI	GAGNNNNNCTC	6 cut(s)	521, 553, 1591, 1623, 1930, 1962
BpmI	CTGGAG	3 cut(s)	1085, 1410, 1593
Bpu14I	TTCGAA	1 cut(s)	760
BpuEI	CTTGAG	2 cut(s)	770, 1618
BpuMI	CCSGG	2 cut(s)	680, 742
BsaBI	GATNNNNATC	1 cut(s)	1547
BsaHI	GRCGYC	1 cut(s)	1528
BsaJI	CCNNGG	4 cut(s)	100, 355, 816, 1203
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	9 cut(s)	81, 332, 361, 362, 660, 1154, 1155, 1184, 1564
Bse1I	ACTGG	4 cut(s)	914, 1106, 1610, 1921
Bse3DI	GCAATG	4 cut(s)	100, 156, 1362, 1889
Bse8I	GATNNNNATC	1 cut(s)	1547
BseBI	CCWGG	3 cut(s)	357, 1179, 1524
BseDI	CCNNGG	4 cut(s)	100, 355, 816, 1203
BseGI	GGATG	8 cut(s)	619, 799, 904, 1054, 1146, 1447, 1548, 1789
BseJI	GATNNNNATC	1 cut(s)	1547
BseLI	CCNNNNNNNGG	9 cut(s)	81, 332, 361, 362, 660, 1154, 1155, 1184, 1564
BseMI	GCAATG	4 cut(s)	100, 156, 1362, 1889
BseMII	CTCAG	7 cut(s)	206, 272, 855, 1110, 1245, 1385, 1898
BseNI	ACTGG	4 cut(s)	914, 1106, 1610, 1921
BseRI	GAGGAG	2 cut(s)	595, 1793
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	6 cut(s)	838, 856, 922, 1415, 1817, 1939
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	2 cut(s)	1422, 1494
Bsh1236I	CGCG	2 cut(s)	392, 1014
BshNI	GGYRCC	1 cut(s)	1030
BsiHKAI	GWGCWC	3 cut(s)	863, 972, 1639
BsiHKCI	CYCGRG	2 cut(s)	361, 381
BsiSI	CCGG	3 cut(s)	431, 680, 741
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	9 cut(s)	81, 332, 361, 362, 660, 1154, 1155, 1184, 1564
BsmAI	GTCTC	5 cut(s)	392, 815, 917, 1085, 1611
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	508
BsoBI	CYCGRG	2 cut(s)	361, 381
Bsp119I	TTCGAA	1 cut(s)	760
Bsp1286I	GDGCHC	4 cut(s)	388, 863, 972, 1639
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	49, 435, 916, 1797
Bsp68I	TCGCGA	2 cut(s)	392, 1014
BspACI	CCGC	6 cut(s)	494, 745, 1573, 1864, 1894, 1941
BspCNI	CTCAG	7 cut(s)	205, 271, 856, 1111, 1246, 1384, 1897
BspFNI	CGCG	2 cut(s)	392, 1014
BspLI	GGNNCC	7 cut(s)	106, 352, 406, 652, 1032, 1251, 1480
BspQI	GCTCTTC	1 cut(s)	1014
BspT104I	TTCGAA	1 cut(s)	760
BspT107I	GGYRCC	1 cut(s)	1030
BsrBI	CCGCTC	1 cut(s)	1941
BsrDI	GCAATG	4 cut(s)	100, 156, 1362, 1889
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	4 cut(s)	914, 1106, 1610, 1921
BssECI	CCNNGG	4 cut(s)	100, 355, 816, 1203
BssMI	GATC	4 cut(s)	49, 435, 916, 1797
BssNI	GRCGYC	1 cut(s)	1528
BssT1I	CCWWGG	2 cut(s)	816, 1203
Bst2UI	CCWGG	3 cut(s)	357, 1179, 1524
Bst4CI	ACNGT	4 cut(s)	104, 510, 1096, 1465
Bst6I	CTCTTC	4 cut(s)	545, 554, 1014, 1070
BstACI	GRCGYC	1 cut(s)	1528
BstAUI	TGTACA	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	6 cut(s)	990, 994, 1594, 1691, 1695, 1699
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	8 cut(s)	619, 799, 904, 1054, 1146, 1447, 1548, 1789
BstFNI	CGCG	2 cut(s)	392, 1014
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	4 cut(s)	52, 438, 919, 1800
BstMAI	GTCTC	5 cut(s)	392, 815, 917, 1085, 1611
BstMBI	GATC	4 cut(s)	49, 435, 916, 1797
BstMWI	GCNNNNNNNGC	5 cut(s)	357, 754, 848, 989, 1258
BstNI	CCWGG	3 cut(s)	357, 1179, 1524
BstSCI	CCNGG	5 cut(s)	355, 678, 740, 1177, 1522
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	2 cut(s)	392, 1014
BstV1I	GCAGC	6 cut(s)	838, 856, 922, 1415, 1817, 1939
BstV2I	GAAGAC	2 cut(s)	206, 234
BsuI	GTATCC	1 cut(s)	1113
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	2 cut(s)	132, 953
BtsCI	GGATG	8 cut(s)	619, 799, 904, 1054, 1146, 1447, 1548, 1789
BtsIMutI	CAGTG	1 cut(s)	861
BtuMI	TCGCGA	2 cut(s)	392, 1014
Cac8I	GCNNGC	6 cut(s)	990, 994, 1594, 1691, 1695, 1699
CfoI	GCGC	1 cut(s)	874
Cfr13I	GGNCC	8 cut(s)	350, 405, 428, 651, 1172, 1250, 1479, 1534
CseI	GACGC	3 cut(s)	140, 1103, 1508
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	5 cut(s)	439, 610, 778, 827, 1949
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	4 cut(s)	51, 437, 918, 1799
DpnII	GATC	4 cut(s)	49, 435, 916, 1797
DraIII	CACNNNGTG	1 cut(s)	1816
EaeI	YGGCCR	1 cut(s)	1200
Eam1104I	CTCTTC	4 cut(s)	545, 554, 1014, 1070
EarI	CTCTTC	4 cut(s)	545, 554, 1014, 1070
Ecl136II	GAGCTC	1 cut(s)	1637
Eco130I	CCWWGG	2 cut(s)	816, 1203
Eco24I	GRGCYC	2 cut(s)	388, 1639
Eco32I	GATATC	3 cut(s)	1675, 1735, 1861
Eco47I	GGWCC	1 cut(s)	1534
Eco53kI	GAGCTC	1 cut(s)	1637
Eco57I	CTGAAG	2 cut(s)	73, 1070
Eco88I	CYCGRG	2 cut(s)	361, 381
EcoICRI	GAGCTC	1 cut(s)	1637
EcoO109I	RGGNCCY	2 cut(s)	405, 1250
EcoRII	CCWGG	3 cut(s)	355, 1177, 1522
EcoRV	GATATC	3 cut(s)	1675, 1735, 1861
EcoT14I	CCWWGG	2 cut(s)	816, 1203
EcoT22I	ATGCAT	1 cut(s)	884
EcoT38I	GRGCYC	2 cut(s)	388, 1639
ErhI	CCWWGG	2 cut(s)	816, 1203
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	5 cut(s)	442, 613, 781, 830, 1952
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 985, 1017, 1580, 1612
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	5 cut(s)	438, 609, 777, 826, 1948
FauI	CCCGC	1 cut(s)	1580
Fnu4HI	GCNGC	8 cut(s)	746, 852, 870, 936, 1404, 1806, 1895, 1953
FokI	GGATG	8 cut(s)	626, 806, 911, 1061, 1153, 1454, 1535, 1796
FriOI	GRGCYC	2 cut(s)	388, 1639
Fsp4HI	GCNGC	8 cut(s)	746, 852, 870, 936, 1404, 1806, 1895, 1953
FspBI	CTAG	4 cut(s)	1266, 1317, 1653, 1902
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	8 cut(s)	746, 852, 870, 936, 1404, 1806, 1895, 1953
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	3 cut(s)	1085, 1410, 1593
HapII	CCGG	3 cut(s)	431, 680, 741
HgaI	GACGC	3 cut(s)	140, 1103, 1508
HhaI	GCGC	1 cut(s)	874
Hin1I	GRCGYC	1 cut(s)	1528
Hin1II	CATG	5 cut(s)	442, 613, 781, 830, 1952
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HindIII	AAGCTT	1 cut(s)	782
HpaII	CCGG	3 cut(s)	431, 680, 741
HphI	GGTGA	4 cut(s)	194, 800, 1137, 1862
Hpy166II	GTNNAC	3 cut(s)	100, 861, 1627
Hpy8I	GTNNAC	3 cut(s)	100, 861, 1627
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	205, 472, 684, 1011
HpyCH4III	ACNGT	4 cut(s)	104, 510, 1096, 1465
HpyCH4IV	ACGT	2 cut(s)	231, 1528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	357, 754, 848, 989, 1258
HpySE526I	ACGT	2 cut(s)	231, 1528
Hsp92I	GRCGYC	1 cut(s)	1528
Hsp92II	CATG	5 cut(s)	442, 613, 781, 830, 1952
HspAI	GCGC	1 cut(s)	872
Kzo9I	GATC	4 cut(s)	49, 435, 916, 1797
LguI	GCTCTTC	1 cut(s)	1014
LmnI	GCTCC	4 cut(s)	277, 550, 1333, 1938
Lsp1109I	GCAGC	6 cut(s)	838, 856, 922, 1415, 1817, 1939
LweI	GCATC	3 cut(s)	922, 930, 1039
MaeI	CTAG	4 cut(s)	1266, 1317, 1653, 1902
MaeII	ACGT	2 cut(s)	231, 1528
MaeIII	GTNAC	3 cut(s)	182, 1039, 1143
MalI	GATC	4 cut(s)	51, 437, 918, 1799
MbiI	CCGCTC	1 cut(s)	1941
MboI	GATC	4 cut(s)	49, 435, 916, 1797
MfeI	CAATTG	2 cut(s)	540, 1538
MhlI	GDGCHC	4 cut(s)	388, 863, 972, 1639
MlsI	TGGCCA	1 cut(s)	1202
MluNI	TGGCCA	1 cut(s)	1202
MlyI	GAGTC	4 cut(s)	179, 364, 530, 1829
MmeI	TCCRAC	2 cut(s)	783, 940
Mox20I	TGGCCA	1 cut(s)	1202
Mph1103I	ATGCAT	1 cut(s)	884
MroXI	GAANNNNTTC	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	1202
MseI	TTAA	2 cut(s)	306, 423
MslI	CAYNNNNRTG	2 cut(s)	317, 831
Msp20I	TGGCCA	1 cut(s)	1202
MspA1I	CMGCKG	2 cut(s)	1406, 1575
MspI	CCGG	3 cut(s)	431, 680, 741
MspR9I	CCNGG	5 cut(s)	357, 680, 742, 1179, 1524
MunI	CAATTG	2 cut(s)	540, 1538
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	3 cut(s)	357, 1179, 1524
MvnI	CGCG	2 cut(s)	392, 1014
MwoI	GCNNNNNNNGC	5 cut(s)	357, 754, 848, 989, 1258
NciI	CCSGG	2 cut(s)	680, 742
NdeII	GATC	4 cut(s)	49, 435, 916, 1797
NlaIII	CATG	5 cut(s)	442, 613, 781, 830, 1952
NlaIV	GGNNCC	7 cut(s)	106, 352, 406, 652, 1032, 1251, 1480
NmuCI	GTSAC	3 cut(s)	182, 1039, 1143
NruI	TCGCGA	2 cut(s)	392, 1014
NsiI	ATGCAT	1 cut(s)	884
NspV	TTCGAA	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	7 cut(s)	159, 262, 658, 762, 1358, 1568, 1853
PfoI	TCCNGGA	1 cut(s)	1522
PkrI	GCNGC	8 cut(s)	747, 853, 871, 937, 1405, 1807, 1896, 1954
PleI	GAGTC	4 cut(s)	179, 364, 530, 1828
PpsI	GAGTC	4 cut(s)	179, 364, 530, 1828
Psp124BI	GAGCTC	1 cut(s)	1639
Psp6I	CCWGG	3 cut(s)	355, 1177, 1522
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	355, 1177, 1522
PspN4I	GGNNCC	7 cut(s)	106, 352, 406, 652, 1032, 1251, 1480
PspPI	GGNCC	8 cut(s)	350, 405, 428, 651, 1172, 1250, 1479, 1534
PvuII	CAGCTG	1 cut(s)	1406
RruI	TCGCGA	2 cut(s)	392, 1014
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	317, 831
SacI	GAGCTC	1 cut(s)	1639
SapI	GCTCTTC	1 cut(s)	1014
SaqAI	TTAA	2 cut(s)	306, 423
SatI	GCNGC	8 cut(s)	746, 852, 870, 936, 1404, 1806, 1895, 1953
Sau3AI	GATC	4 cut(s)	49, 435, 916, 1797
Sau96I	GGNCC	8 cut(s)	350, 405, 428, 651, 1172, 1250, 1479, 1534
SchI	GAGTC	4 cut(s)	179, 364, 530, 1829
ScrFI	CCNGG	5 cut(s)	357, 680, 742, 1179, 1524
SduI	GDGCHC	4 cut(s)	388, 863, 972, 1639
SfaNI	GCATC	3 cut(s)	922, 930, 1039
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	1 cut(s)	1534
SmiMI	CAYNNNNRTG	2 cut(s)	317, 831
SmlI	CTYRAG	2 cut(s)	749, 1597
SmoI	CTYRAG	2 cut(s)	749, 1597
SpeI	ACTAGT	1 cut(s)	1265
SsiI	CCGC	6 cut(s)	494, 745, 1573, 1864, 1894, 1941
SspI	AATATT	1 cut(s)	1584
SspMI	CTAG	4 cut(s)	1266, 1317, 1653, 1902
SstI	GAGCTC	1 cut(s)	1639
StyD4I	CCNGG	5 cut(s)	355, 678, 740, 1177, 1522
StyI	CCWWGG	2 cut(s)	816, 1203
TaaI	ACNGT	4 cut(s)	104, 510, 1096, 1465
TaiI	ACGT	2 cut(s)	234, 1531
TaqI	TCGA	7 cut(s)	443, 486, 626, 760, 1308, 1356, 1823
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	2 cut(s)	748, 1897
TfiI	GAWTC	7 cut(s)	159, 262, 658, 762, 1358, 1568, 1853
Tru1I	TTAA	2 cut(s)	306, 423
Tru9I	TTAA	2 cut(s)	306, 423
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	3 cut(s)	182, 1039, 1143
TseI	GCWGC	6 cut(s)	851, 869, 935, 1403, 1805, 1952
Tsp45I	GTSAC	3 cut(s)	182, 1039, 1143
TspGWI	ACGGA	1 cut(s)	1448
TspRI	CASTG	1 cut(s)	868
VneI	GTGCAC	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	1534
XapI	RAATTY	3 cut(s)	892, 1231, 1302
XbaI	TCTAGA	1 cut(s)	1901
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	4 cut(s)	1266, 1317, 1653, 1902
ZraI	GACGTC	1 cut(s)	1529
Zsp2I	ATGCAT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.