Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

30605915 .. 30606862

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0173900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCCCCGACTTCTTCTACAGCCTATTCTTGCCGACCATGGTCTTCCGCAACACCGCCCTGAACCTTCTGTTCAATCTCCTCACCACTTCCGACGAGGCCGAAGTCGAAGCTCGCCTCTTGGAGGAAGACGCCTTCGCCGCCTCCAGAACGATTATCAGAGCGATCTACTCCGACGAGATCAGCGAACGCGTGCTGGAGGTTCTCAAGGCTAAGAACACCGGCGCTTCTGCTGCTGAAAAGGGGCCCCTGTTGTTGCCGGACCTTGGCATACGCAAGCCCTTCGTGGGCATTGTTATCAAGAACCTCAGCAGTCCCTTCTCTCCCTGGAGGCACTTCGGCACCCTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCGAGAGGCCTTCTTCGCCGCCAGGGAGAAGGTCCGTAAGATCTACATCCAAGAGGTCTGCGAGCGCATGGTGGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACGTCGCGTCGGAGACCGCCGCCGGTGGTGTGCTTGAGGCAATTGAAAGTGAGCTAAAATCCATGGAATTAGCAGAATCCATGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

206

Amino Acids

22.83

Weight (kDa)

4.99

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	222, 536
AciI	CCGC	7 cut(s)	79, 87, 171, 435, 510, 546, 549
AclWI	GGATC	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	3 cut(s)	154, 296, 317
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	106, 575
AjnI	CCWGG	4 cut(s)	9, 356, 399, 437
AluBI	AGCT	2 cut(s)	143, 583
AluI	AGCT	2 cut(s)	143, 583
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	4 cut(s)	129, 275, 390, 423
ApaI	GGGCCC	1 cut(s)	279
ApeKI	GCWGC	3 cut(s)	263, 512, 521
AspLEI	GCGC	2 cut(s)	257, 483
AspS9I	GGNCC	4 cut(s)	275, 276, 292, 448
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	292, 448
BaeGI	GKGCMC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	38, 279
BbsI	GAAGAC	2 cut(s)	67, 165
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	250, 499, 508
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	4 cut(s)	11, 358, 401, 439
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	258
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
BlsI	GCNGC	7 cut(s)	172, 265, 436, 511, 514, 523, 550
Bme1390I	CCNGG	4 cut(s)	11, 358, 401, 439
Bme18I	GGWCC	2 cut(s)	292, 448
BmgT120I	GGNCC	4 cut(s)	275, 276, 292, 448
BmiI	GGNNCC	5 cut(s)	276, 277, 278, 373, 405
BmrFI	CCNGG	4 cut(s)	11, 358, 401, 439
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	67, 165
BpmI	CTGGAG	3 cut(s)	160, 248, 379
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	221, 584
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	7 cut(s)	69, 295, 356, 399, 438, 591, 609
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 296, 317
Bse118I	RCCGGY	2 cut(s)	251, 551
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	4 cut(s)	11, 358, 401, 439
BseDI	CCNNGG	7 cut(s)	69, 295, 356, 399, 438, 591, 609
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	154, 296, 317
BseMII	CTCAG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	250, 499, 508
Bsh1236I	CGCG	2 cut(s)	222, 536
BshFI	GGCC	4 cut(s)	131, 277, 392, 425
BshNI	GGYRCC	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	252, 290, 552
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	154, 296, 317
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	131, 277, 392, 425
Bso31I	GGTCTC	1 cut(s)	536
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	38, 279
Bsp143I	GATC	5 cut(s)	22, 195, 210, 456, 492
Bsp19I	CCATGG	3 cut(s)	69, 591, 609
BspACI	CCGC	7 cut(s)	79, 87, 171, 435, 510, 546, 549
BspANI	GGCC	4 cut(s)	131, 277, 392, 425
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	2 cut(s)	222, 536
BspLI	GGNNCC	5 cut(s)	276, 277, 278, 373, 405
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	251, 551
BssAI	RCCGGY	2 cut(s)	251, 551
BssECI	CCNNGG	7 cut(s)	69, 295, 356, 399, 438, 591, 609
BssMI	GATC	5 cut(s)	22, 195, 210, 456, 492
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	4 cut(s)	69, 295, 591, 609
Bst2UI	CCWGG	4 cut(s)	11, 358, 401, 439
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	145, 224, 308, 479
BstDEI	CTNAG	2 cut(s)	243, 338
BstDSI	CCRYGG	3 cut(s)	69, 591, 609
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	2 cut(s)	222, 536
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 483
BstKTI	GATC	5 cut(s)	25, 198, 213, 459, 495
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	5 cut(s)	22, 195, 210, 456, 492
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 263, 431, 518, 521
BstNI	CCWGG	4 cut(s)	11, 358, 401, 439
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	9, 356, 399, 437
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	2 cut(s)	222, 536
BstV1I	GCAGC	3 cut(s)	250, 499, 508
BstV2I	GAAGAC	2 cut(s)	67, 165
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	131, 277, 392, 425
BtgI	CCRYGG	3 cut(s)	69, 591, 609
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	145, 224, 308, 479
CfoI	GCGC	2 cut(s)	257, 483
Cfr10I	RCCGGY	2 cut(s)	251, 551
Cfr13I	GGNCC	4 cut(s)	275, 276, 292, 448
CseI	GACGC	2 cut(s)	170, 525
CviAII	CATG	4 cut(s)	70, 484, 592, 610
DdeI	CTNAG	2 cut(s)	243, 338
DpnI	GATC	5 cut(s)	24, 197, 212, 458, 494
DpnII	GATC	5 cut(s)	22, 195, 210, 456, 492
Eco130I	CCWWGG	4 cut(s)	69, 295, 591, 609
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	2 cut(s)	38, 279
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	292, 448
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	2 cut(s)	275, 276
EcoRII	CCWGG	4 cut(s)	9, 356, 399, 437
EcoT14I	CCWWGG	4 cut(s)	69, 295, 591, 609
EcoT38I	GRGCYC	2 cut(s)	38, 279
ErhI	CCWWGG	4 cut(s)	69, 295, 591, 609
FaeI	CATG	4 cut(s)	73, 487, 595, 613
FaiI	YATR	5 cut(s)	71, 302, 485, 593, 611
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	69, 483, 591, 609
Fnu4HI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	38, 279
Fsp4HI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
GlaI	GCGC	2 cut(s)	256, 482
GluI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
GsuI	CTGGAG	3 cut(s)	160, 248, 379
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	131, 277, 392, 425
HapII	CCGG	3 cut(s)	252, 290, 552
HgaI	GACGC	2 cut(s)	170, 525
HhaI	GCGC	2 cut(s)	257, 483
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	73, 487, 595, 613
Hin6I	GCGC	2 cut(s)	255, 481
HinP1I	GCGC	2 cut(s)	255, 481
HinfI	GANTC	2 cut(s)	14, 605
HpaII	CCGG	3 cut(s)	252, 290, 552
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	27, 124, 191, 205, 541
Hpy188III	TCNNGA	2 cut(s)	177, 331
Hpy99I	CGWCG	5 cut(s)	128, 209, 389, 536, 541
HpyAV	CCTTC	7 cut(s)	107, 175, 322, 358, 418, 436, 439
HpyCH4IV	ACGT	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 263, 431, 518, 521
HpyF3I	CTNAG	2 cut(s)	243, 338
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	73, 487, 595, 613
HspAI	GCGC	2 cut(s)	255, 481
Kzo9I	GATC	5 cut(s)	22, 195, 210, 456, 492
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	3 cut(s)	250, 499, 508
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	5 cut(s)	24, 197, 212, 458, 494
MboI	GATC	5 cut(s)	22, 195, 210, 456, 492
MboII	GAAGA	4 cut(s)	37, 67, 170, 421
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	38, 279
MluCI	AATT	2 cut(s)	570, 596
MluI	ACGCGT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	3 cut(s)	147, 228, 519
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	252, 290, 552
MspR9I	CCNGG	4 cut(s)	11, 358, 401, 439
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	4 cut(s)	11, 358, 401, 439
MvnI	CGCG	2 cut(s)	222, 536
MwoI	GCNNNNNNNGC	5 cut(s)	170, 263, 431, 518, 521
NcoI	CCATGG	3 cut(s)	69, 591, 609
NdeII	GATC	5 cut(s)	22, 195, 210, 456, 492
NlaIII	CATG	4 cut(s)	73, 487, 595, 613
NlaIV	GGNNCC	5 cut(s)	276, 277, 278, 373, 405
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	7 cut(s)	172, 265, 436, 511, 514, 523, 550
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	9, 356, 399, 437
PspGI	CCWGG	4 cut(s)	9, 356, 399, 437
PspN4I	GGNNCC	5 cut(s)	276, 277, 278, 373, 405
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	275, 276, 292, 448
PsuI	RGATCY	1 cut(s)	456
SatI	GCNGC	7 cut(s)	171, 264, 435, 510, 513, 522, 549
Sau3AI	GATC	5 cut(s)	22, 195, 210, 456, 492
Sau96I	GGNCC	4 cut(s)	275, 276, 292, 448
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	4 cut(s)	11, 358, 401, 439
SduI	GDGCHC	2 cut(s)	38, 279
SetI	ASST	9 cut(s)	99, 145, 234, 297, 339, 450, 474, 534, 585
SfcI	CTRYAG	1 cut(s)	49
SgrAI	CRCCGGYG	2 cut(s)	251, 551
SinI	GGWCC	2 cut(s)	292, 448
SmlI	CTYRAG	2 cut(s)	236, 563
SmoI	CTYRAG	2 cut(s)	236, 563
Sse9I	AATT	2 cut(s)	570, 596
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	7 cut(s)	79, 87, 171, 435, 510, 546, 549
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	4 cut(s)	9, 356, 399, 437
StyI	CCWWGG	4 cut(s)	69, 295, 591, 609
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	138, 414
TasI	AATT	2 cut(s)	570, 596
TauI	GCSGC	4 cut(s)	173, 437, 512, 551
TfiI	GAWTC	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	263, 512, 521
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	292, 448
XagI	CCTNNNNNAGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.