RchiOBHm_Chr6g0259281

Cell Division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001165
Physical Location & Seq
Reverse (-)
14529865 .. 14532264
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23247

Sequence Viewer

Length: 2400 bp
ATGTCGAACCAAGATGAGGGAACGAAGAAGGACTTCAGCACCGCCATTCTCAACCGCAAGAAGGCTCCAAATCGCCTCATTGTCGATGAAGCTGTGGTGGATGACAACTCCATCATCCAACTCCACCCGGCGACCATGGAGAAGCTCCAGCTCTTTCGTGGTGACACAGTCTTGATCAAAGGAAAGAAGAGAAGAGACACAATCTGTATTGCTCTTGCTGATGATACATGTGAGGAACCAAAGGTAAGGATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGTGATGTTGTTTCCATTCACCAATGCGCTGATGTTAGGTATGGAAAGCGTGTCCACATTCTCCCTATAGATGACACAATTGAAGGGATCACTGGAAATCTGTTTGATGCCTACTTGAAGCCTTATTTCCAAGAGACCTACCGCCCGGTGAGGAAAGGTGATCTTTTCCTAGTGAGAGGAGGAATGAGGAGTGTAGAGTTTAAGGTTATTGAGACTGACCCTCCTGAGTACTGTGTGGTTGCTCCGGACACCGAAATCTTCTGTGAGGGAGAACCTGTTAGAAGGGAGGATGAGGAAAGATTAGATGAGGTAGGGTATGATGATGTTGGTGGTGTTAGGAAACAGATGGCTCAGATTCGTGAATTGGTTGAGCTGCCTCTGAGGCATCCTCAGCTGTTTAAATCAATCGGTGTCAAACCACCAAAGGGTATTCTTCTCTATGGTCCTCCCGGAACCGGCAAGACTTTAATTGCAAGAGCTGTTGCTAATGAAACCGGGGCATTCTTTTTCTGCATCAATGGACCAGAAATCATGTCCAAGATGGCTGGAGAGAGTGAGAGCAACCTCAGGAAAGCTTTTGAGGAAGCAGAGAAGAATGCGCCATCAATCATATTTATTGATGAGATTGATTCCATTGCTCCCAAGAGAGAGAAGACTCATGGTGAAGTTGAGAGGAGGATTGTTTCCCAGCTCTTGACTCTTATGGATGGACTAAAGTCCCGAGCACATGTCATTGTTATGGGGGCTACTAATCGTCCAAACAGTATTGACCCGGCTCTTAGGAGGTTTGGAAGATTTGATAGGGAAATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTCCTCCGCATTCATAGCAAGAACATGAAGCTTGCCGAAGATGTCGATTTAGAAAGAGTTGCCAAGGATACTCATGGGTATGTTGGTGCTGATCTAGCTGCTTTATCTACTGAGGCTGCACTTCAATGCATCCGAGAGAAGATGGATGTGATTGACTTGGAAGATGAGACAATAGATGCTGAGATACTCAACTCAATGGCAGTAACAAACGAACATTTCCAGACTGCTCTTGGAACAAGCAACCCTTCTGCTCTTCGTGAAACGGTTGTTGAAGTTCCCAATGTTACTTGGGATGCTATTGGAGGTCTTGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCTGTTGAGCATCCAGAGAAATTTGAGAAATTCGGTATGTCACCCTCAAAGGGAGTTCTTTTCTATGGTCCTCCTGGATGCGGTAAAACTCTTCTGGCCAAGGCTATAGCTAATGAGTGTCAGGCTAACTTCATCAGTATCAAGGGACCTGAGTTGCTCACCATGTGGTTTGGAGAGAGTGAGGCCAATGTAAGAGAAATTTTTGACAAGGCTCGTGCATCTGCTCCATGTGTCCTCTTTTTTGATGAGCTCGATTCCATTGCTACTAAAAGAGGTAGTAATGTAGGTGATTCTGGAGGTGCTGATAGGGTTTTGAACCAACTCCTTACTGAAATGGATGGAGTGTCTGCCAAGAAAACTGTTTTCATTATTGGGGCCACCAACAGACCTGACATTATAGACCCTGCACTTCTTCGTCCAGGACGTCTGGATCAATTGCTTTACATTCCTCTCCCTGATGAAGAATCCCGCTATCAGATATTCAAGTCTTGCTTGAGGAAGTCTCCTGTTTCCAAGTATGTGGACCTCACAGCTCTTGCCAAGCACACAGAAGGTTTCAGTGGTGCTGATATCACTGAAATATGCCAGCGTGCTTGCAAATATGCCATCAGAGACAACATTGAGAAAGATATTGAGAGGGAGAGGAGGAGAAGTGAGAATCCTGATGTTATGGAGGAGGATAAAGATGAAGTATCAGAGATCACCGCAGCTCATTTTGAGGAATCAATGAAGTATGCTCGTAGGAGTGTTAGTGATGCTGATATCCGCAAGTACCAGGCATTTGCAACCACATTGCACCAGGCGAGAGGGTTTGGAGCAGATGAGTTCAGGTTCCCCAGTGGCTCCGGCGCTGCTGTTGGTTCTGATCCTTTTGCAACTACTACTGCTGGTGAAGCTGATGAAGACCTTTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

799

Amino Acids

89.05

Weight (kDa)

5.18

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC48_N PF02359 25 - 106 7e-22 Cell division protein 48 (CDC48), N-terminal domain
CDC48_2 PF02933 126 - 190 1.3e-11 Cell division protein 48 (CDC48), domain 2
RuvB_N PF05496 239 - 314 6.3e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA PF00004 240 - 369 1.5e-48 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 392 - 433 4.1e-14 AAA+ lid domain
AAA PF00004 513 - 645 5.7e-47 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 668 - 706 6.6e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1909
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 8 cut(s) 42, 55, 430, 1141, 1563, 1951, 2187, 2248
AclWI GGATC 3 cut(s) 383, 1920, 2342
AcoI YGGCCR 1 cut(s) 1578
AcsI RAATTY 3 cut(s) 1502, 1511, 1680
AcuI CTGAAG 1 cut(s) 19
AcyI GRCGYC 2 cut(s) 1126, 1906
AdeI CACNNNGTG 1 cut(s) 1647
AfaI GTAC 2 cut(s) 518, 2255
AfiI CCNNNNNNNGG 6 cut(s) 16, 61, 713, 743, 1532, 1562
AflIII ACRYGT 2 cut(s) 227, 1015
AgsI TTSAA 9 cut(s) 371, 406, 1259, 1406, 1445, 1466, 1478, 1798, 1966
AjnI CCWGG 4 cut(s) 1555, 1900, 2256, 2280
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
Alw21I GWGCWC 2 cut(s) 1015, 1734
Alw26I GTCTC 7 cut(s) 189, 416, 494, 1295, 1463, 1989, 2088
AlwI GGATC 3 cut(s) 383, 1920, 2342
Ama87I CYCGRG 1 cut(s) 1008
Aor13HI TCCGGA 1 cut(s) 532
AoxI GGCC 3 cut(s) 1578, 1665, 1857
ApeKI GCWGC 5 cut(s) 661, 1232, 1250, 2189, 2333
ApoI RAATTY 3 cut(s) 1502, 1511, 1680
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 3 cut(s) 317, 889, 2333
AspS9I GGNCC 7 cut(s) 731, 809, 1135, 1550, 1628, 1857, 2005
AsuC2I CCSGG 5 cut(s) 128, 434, 738, 784, 1061
AvaI CYCGRG 1 cut(s) 1008
AvaII GGWCC 6 cut(s) 731, 809, 1135, 1550, 1628, 2005
AxyI CCTNAGG 2 cut(s) 275, 854
BalI TGGCCA 1 cut(s) 1580
BanII GRGCYC 1 cut(s) 1734
BauI CACGAG 1 cut(s) 1695
BbsI GAAGAC 2 cut(s) 947, 2391
Bbv12I GWGCWC 2 cut(s) 1015, 1734
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 5 cut(s) 648, 1219, 1237, 2201, 2320
BccI CCATC 8 cut(s) 119, 628, 823, 898, 989, 1270, 1814, 2096
BcgI CGANNNNNNTGC 2 cut(s) 1724, 1758
BciT130I CCWGG 4 cut(s) 1557, 1902, 2258, 2282
BciVI GTATCC 1 cut(s) 1195
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 5 cut(s) 128, 434, 738, 784, 1061
BcoDI GTCTC 7 cut(s) 189, 416, 494, 1295, 1463, 1989, 2088
BfaI CTAG 2 cut(s) 458, 1229
BfmI CTRYAG 2 cut(s) 354, 1587
BfoI RGCGCY 1 cut(s) 2334
BfuI GTATCC 1 cut(s) 1195
BglI GCCNNNNNGGC 1 cut(s) 670
BisI GCNGC 5 cut(s) 662, 1233, 1251, 2190, 2334
BlsI GCNGC 5 cut(s) 663, 1234, 1252, 2191, 2335
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 9 cut(s) 128, 434, 738, 784, 1061, 1557, 1902, 2258, 2282
Bme18I GGWCC 6 cut(s) 731, 809, 1135, 1550, 1628, 2005
BmeT110I CYCGRG 1 cut(s) 1008
BmgT120I GGNCC 7 cut(s) 731, 809, 1135, 1550, 1628, 1857, 2005
BmiI GGNNCC 7 cut(s) 66, 237, 742, 1629, 1858, 2315, 2326
BmrFI CCNGG 9 cut(s) 128, 434, 738, 784, 1061, 1557, 1902, 2258, 2282
BmrI ACTGGG 1 cut(s) 2313
BmuI ACTGGG 1 cut(s) 2313
BoxI GACNNNNGTC 1 cut(s) 1003
BpiI GAAGAC 2 cut(s) 947, 2391
BplI GAGNNNNNCTC 4 cut(s) 661, 693, 1969, 2001
BpmI CTGGAG 3 cut(s) 131, 855, 1797
Bpu10I CCTNAGC 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 1151, 1996
BpuMI CCSGG 5 cut(s) 128, 434, 738, 784, 1061
BsaHI GRCGYC 2 cut(s) 1126, 1906
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 4 cut(s) 135, 783, 1197, 1581
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 8 cut(s) 493, 523, 549, 579, 2119, 2149, 2218, 2248
Bsc4I CCNNNNNNNGG 6 cut(s) 16, 61, 713, 743, 1532, 1562
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 2 cut(s) 385, 2319
Bse21I CCTNAGG 2 cut(s) 275, 854
Bse3DI GCAATG 3 cut(s) 921, 1740, 2273
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 4 cut(s) 1557, 1902, 2258, 2282
BseDI CCNNGG 4 cut(s) 135, 783, 1197, 1581
BseLI CCNNNNNNNGG 6 cut(s) 16, 61, 713, 743, 1532, 1562
BseMI GCAATG 3 cut(s) 921, 1740, 2273
BseMII CTCAG 8 cut(s) 504, 653, 659, 692, 868, 1236, 1305, 1623
BseNI ACTGG 2 cut(s) 385, 2319
BseRI GAGGAG 6 cut(s) 480, 490, 976, 2140, 2143, 2171
BseXI GCAGC 5 cut(s) 648, 1219, 1237, 2201, 2320
BseYI CCCAGC 1 cut(s) 975
BsgI GTGCAG 2 cut(s) 1236, 1872
BshFI GGCC 3 cut(s) 1580, 1667, 1859
BsiHKAI GWGCWC 2 cut(s) 1015, 1734
BsiHKCI CYCGRG 1 cut(s) 1008
BsiSI CCGG 8 cut(s) 128, 434, 533, 738, 744, 783, 1061, 2328
BslFI GGGAC 2 cut(s) 991, 1641
BslI CCNNNNNNNGG 6 cut(s) 16, 61, 713, 743, 1532, 1562
BsmAI GTCTC 7 cut(s) 189, 416, 494, 1295, 1463, 1989, 2088
BsmFI GGGAC 2 cut(s) 991, 1641
BsmI GAATGC 3 cut(s) 788, 889, 1143
BsnI GGCC 3 cut(s) 1580, 1667, 1859
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 1008
Bsp1286I GDGCHC 2 cut(s) 1015, 1734
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 8 cut(s) 42, 55, 430, 1141, 1563, 1951, 2187, 2248
BspANI GGCC 3 cut(s) 1580, 1667, 1859
BspCNI CTCAG 8 cut(s) 505, 652, 660, 691, 867, 1237, 1306, 1624
BspEI TCCGGA 1 cut(s) 532
BspLI GGNNCC 7 cut(s) 66, 237, 742, 1629, 1858, 2315, 2326
BspPI GGATC 3 cut(s) 383, 1920, 2342
BspQI GCTCTTC 1 cut(s) 1392
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 3 cut(s) 921, 1740, 2273
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 2 cut(s) 385, 2319
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 4 cut(s) 135, 783, 1197, 1581
BssMI GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
BssNI GRCGYC 2 cut(s) 1126, 1906
BssSI CACGAG 1 cut(s) 1695
BssT1I CCWWGG 3 cut(s) 135, 1197, 1581
Bst2BI CACGAG 1 cut(s) 1695
Bst2UI CCWGG 4 cut(s) 1557, 1902, 2258, 2282
Bst4CI ACNGT 6 cut(s) 169, 521, 1052, 1399, 1474, 1843
Bst6I CTCTTC 4 cut(s) 182, 187, 1392, 1578
BstACI GRCGYC 2 cut(s) 1126, 1906
BstC8I GCNNGC 4 cut(s) 1167, 2069, 2073, 2077
BstDSI CCRYGG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 2334
BstHHI GCGC 3 cut(s) 317, 889, 2333
BstKTI GATC 7 cut(s) 177, 378, 451, 1228, 1915, 2184, 2350
BstMAI GTCTC 7 cut(s) 189, 416, 494, 1295, 1463, 1989, 2088
BstMBI GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
BstMWI GCNNNNNNNGC 5 cut(s) 670, 679, 1149, 1229, 2375
BstNI CCWGG 4 cut(s) 1557, 1902, 2258, 2282
BstNSI RCATGY 2 cut(s) 231, 1019
BstPAI GACNNNNGTC 1 cut(s) 1003
BstSCI CCNGG 9 cut(s) 126, 432, 736, 782, 1059, 1555, 1900, 2256, 2280
BstSFI CTRYAG 2 cut(s) 354, 1587
BstV1I GCAGC 5 cut(s) 648, 1219, 1237, 2201, 2320
BstV2I GAAGAC 2 cut(s) 947, 2391
BstXI CCANNNNNNTGG 1 cut(s) 2002
Bsu36I CCTNAGG 2 cut(s) 275, 854
BsuI GTATCC 1 cut(s) 1195
BsuRI GGCC 3 cut(s) 1580, 1667, 1859
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 4 cut(s) 378, 2047, 2055, 2326
Cac8I GCNNGC 4 cut(s) 1167, 2069, 2073, 2077
CfoI GCGC 3 cut(s) 317, 889, 2333
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 7 cut(s) 731, 809, 1135, 1550, 1628, 1857, 2005
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 2 cut(s) 517, 2254
CviAII CATG 9 cut(s) 136, 228, 820, 947, 1016, 1159, 1208, 1645, 1710
CviQI GTAC 2 cut(s) 517, 2254
DpnI GATC 7 cut(s) 176, 377, 450, 1227, 1914, 2183, 2349
DpnII GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
DraI TTTAAA 1 cut(s) 688
DraIII CACNNNGTG 1 cut(s) 1647
EaeI YGGCCR 1 cut(s) 1578
Eam1104I CTCTTC 4 cut(s) 182, 187, 1392, 1578
EarI CTCTTC 4 cut(s) 182, 187, 1392, 1578
Ecl136II GAGCTC 1 cut(s) 1732
Eco130I CCWWGG 3 cut(s) 135, 1197, 1581
Eco24I GRGCYC 1 cut(s) 1734
Eco31I GGTCTC 1 cut(s) 416
Eco32I GATATC 2 cut(s) 2053, 2245
Eco47I GGWCC 6 cut(s) 731, 809, 1135, 1550, 1628, 2005
Eco53kI GAGCTC 1 cut(s) 1732
Eco57I CTGAAG 1 cut(s) 19
Eco81I CCTNAGG 2 cut(s) 275, 854
Eco88I CYCGRG 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 1732
EcoO109I RGGNCCY 2 cut(s) 1135, 1628
EcoRII CCWGG 4 cut(s) 1555, 1900, 2256, 2280
EcoRV GATATC 2 cut(s) 2053, 2245
EcoT14I CCWWGG 3 cut(s) 135, 1197, 1581
EcoT22I ATGCAT 1 cut(s) 1265
EcoT38I GRGCYC 1 cut(s) 1734
ErhI CCWWGG 3 cut(s) 135, 1197, 1581
FaeI CATG 9 cut(s) 139, 231, 823, 950, 1019, 1162, 1211, 1648, 1713
FalI AAGNNNNNCTT 8 cut(s) 17, 49, 435, 467, 1363, 1395, 1958, 1990
FaqI GGGAC 2 cut(s) 991, 1641
FatI CATG 9 cut(s) 135, 227, 819, 946, 1015, 1158, 1207, 1644, 1709
FauI CCCGC 1 cut(s) 1958
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 662, 1233, 1251, 2190, 2334
FriOI GRGCYC 1 cut(s) 1734
Fsp4HI GCNGC 5 cut(s) 662, 1233, 1251, 2190, 2334
FspBI CTAG 2 cut(s) 458, 1229
GlaI GCGC 3 cut(s) 316, 888, 2332
GluI GCNGC 5 cut(s) 662, 1233, 1251, 2190, 2334
GsaI CCCAGC 1 cut(s) 979
GsuI CTGGAG 3 cut(s) 131, 855, 1797
HaeII RGCGCY 1 cut(s) 2334
HaeIII GGCC 3 cut(s) 1580, 1667, 1859
HapII CCGG 8 cut(s) 128, 434, 533, 738, 744, 783, 1061, 2328
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 3 cut(s) 317, 889, 2333
Hin1I GRCGYC 2 cut(s) 1126, 1906
Hin1II CATG 9 cut(s) 139, 231, 823, 950, 1019, 1162, 1211, 1648, 1713
Hin6I GCGC 3 cut(s) 315, 887, 2331
HinP1I GCGC 3 cut(s) 315, 887, 2331
HindIII AAGCTT 2 cut(s) 861, 1163
HinfI GANTC 9 cut(s) 643, 917, 943, 985, 1736, 1772, 1946, 2140, 2204
HpaII CCGG 8 cut(s) 128, 434, 533, 738, 744, 783, 1061, 2328
Hpy166II GTNNAC 2 cut(s) 343, 2005
Hpy188I TCNGA 7 cut(s) 642, 669, 1268, 1959, 2093, 2179, 2347
Hpy8I GTNNAC 2 cut(s) 343, 2005
HpyAV CCTTC 6 cut(s) 22, 55, 365, 564, 1389, 2027
HpyCH4III ACNGT 6 cut(s) 169, 521, 1052, 1399, 1474, 1843
HpyCH4IV ACGT 1 cut(s) 1906
HpyF10VI GCNNNNNNNGC 5 cut(s) 670, 679, 1149, 1229, 2375
HpySE526I ACGT 1 cut(s) 1906
Hsp92I GRCGYC 2 cut(s) 1126, 1906
Hsp92II CATG 9 cut(s) 139, 231, 823, 950, 1019, 1162, 1211, 1648, 1713
HspAI GCGC 3 cut(s) 315, 887, 2331
Kpn2I TCCGGA 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 7 cut(s) 70, 150, 535, 931, 1711, 2297, 2330
Lsp1109I GCAGC 5 cut(s) 648, 1219, 1237, 2201, 2320
MaeI CTAG 2 cut(s) 458, 1229
MaeII ACGT 1 cut(s) 1906
MaeIII GTNAC 4 cut(s) 161, 1336, 1417, 1521
MalI GATC 7 cut(s) 176, 377, 450, 1227, 1914, 2183, 2349
MboI GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
MfeI CAATTG 2 cut(s) 366, 1916
MhlI GDGCHC 2 cut(s) 1015, 1734
MlsI TGGCCA 1 cut(s) 1580
MluCI AATT 7 cut(s) 366, 650, 756, 1502, 1511, 1680, 1916
MluNI TGGCCA 1 cut(s) 1580
MlyI GAGTC 2 cut(s) 937, 979
MmeI TCCRAC 1 cut(s) 142
Mox20I TGGCCA 1 cut(s) 1580
Mph1103I ATGCAT 1 cut(s) 1265
MroI TCCGGA 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 1580
MseI TTAA 4 cut(s) 489, 687, 755, 1452
MslI CAYNNNNRTG 3 cut(s) 1025, 1212, 1258
Msp20I TGGCCA 1 cut(s) 1580
MspA1I CMGCKG 1 cut(s) 682
MspI CCGG 8 cut(s) 128, 434, 533, 738, 744, 783, 1061, 2328
MspR9I CCNGG 9 cut(s) 128, 434, 738, 784, 1061, 1557, 1902, 2258, 2282
MunI CAATTG 2 cut(s) 366, 1916
Mva1269I GAATGC 3 cut(s) 788, 889, 1143
MvaI CCWGG 4 cut(s) 1557, 1902, 2258, 2282
MwoI GCNNNNNNNGC 5 cut(s) 670, 679, 1149, 1229, 2375
NciI CCSGG 5 cut(s) 128, 434, 738, 784, 1061
NcoI CCATGG 1 cut(s) 135
NdeII GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
NlaIII CATG 9 cut(s) 139, 231, 823, 950, 1019, 1162, 1211, 1648, 1713
NlaIV GGNNCC 7 cut(s) 66, 237, 742, 1629, 1858, 2315, 2326
NmuCI GTSAC 2 cut(s) 161, 1521
NsiI ATGCAT 1 cut(s) 1265
NspI RCATGY 2 cut(s) 231, 1019
PciI ACATGT 2 cut(s) 227, 1015
PciSI GCTCTTC 1 cut(s) 1392
PcsI WCGNNNNNNNCGW 1 cut(s) 1903
PctI GAATGC 3 cut(s) 788, 889, 1143
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 7 cut(s) 643, 917, 1736, 1772, 1946, 2140, 2204
PflFI GACNNNGTC 1 cut(s) 167
PfoI TCCNGGA 3 cut(s) 736, 1555, 1900
PkrI GCNGC 5 cut(s) 663, 1234, 1252, 2191, 2335
PleI GAGTC 2 cut(s) 937, 979
PpsI GAGTC 2 cut(s) 937, 979
PpuMI RGGWCCY 2 cut(s) 1135, 1628
PscI ACATGT 2 cut(s) 227, 1015
PshAI GACNNNNGTC 1 cut(s) 1003
Psp124BI GAGCTC 1 cut(s) 1734
Psp5II RGGWCCY 2 cut(s) 1135, 1628
Psp6I CCWGG 4 cut(s) 1555, 1900, 2256, 2280
PspFI CCCAGC 1 cut(s) 975
PspGI CCWGG 4 cut(s) 1555, 1900, 2256, 2280
PspN4I GGNNCC 7 cut(s) 66, 237, 742, 1629, 1858, 2315, 2326
PspPI GGNCC 7 cut(s) 731, 809, 1135, 1550, 1628, 1857, 2005
PspPPI RGGWCCY 2 cut(s) 1135, 1628
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 2 cut(s) 518, 2255
RsaNI GTAC 2 cut(s) 517, 2254
RseI CAYNNNNRTG 3 cut(s) 1025, 1212, 1258
SacI GAGCTC 1 cut(s) 1734
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 4 cut(s) 489, 687, 755, 1452
SatI GCNGC 5 cut(s) 662, 1233, 1251, 2190, 2334
Sau3AI GATC 7 cut(s) 174, 375, 448, 1225, 1912, 2181, 2347
Sau96I GGNCC 7 cut(s) 731, 809, 1135, 1550, 1628, 1857, 2005
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 2 cut(s) 937, 979
ScrFI CCNGG 9 cut(s) 128, 434, 738, 784, 1061, 1557, 1902, 2258, 2282
SduI GDGCHC 2 cut(s) 1015, 1734
SfcI CTRYAG 2 cut(s) 354, 1587
SinI GGWCC 6 cut(s) 731, 809, 1135, 1550, 1628, 2005
SmiMI CAYNNNNRTG 3 cut(s) 1025, 1212, 1258
SmlI CTYRAG 2 cut(s) 1130, 1975
SmoI CTYRAG 2 cut(s) 1130, 1975
Sse9I AATT 7 cut(s) 366, 650, 756, 1502, 1511, 1680, 1916
SsiI CCGC 8 cut(s) 42, 55, 430, 1141, 1563, 1951, 2187, 2248
SspMI CTAG 2 cut(s) 458, 1229
SstI GAGCTC 1 cut(s) 1734
StyD4I CCNGG 9 cut(s) 126, 432, 736, 782, 1059, 1555, 1900, 2256, 2280
StyI CCWWGG 3 cut(s) 135, 1197, 1581
TaaI ACNGT 6 cut(s) 169, 521, 1052, 1399, 1474, 1843
TaiI ACGT 1 cut(s) 1909
TaqI TCGA 4 cut(s) 5, 84, 1179, 1734
TasI AATT 7 cut(s) 366, 650, 756, 1502, 1511, 1680, 1916
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 7 cut(s) 643, 917, 1736, 1772, 1946, 2140, 2204
Tru1I TTAA 4 cut(s) 489, 687, 755, 1452
Tru9I TTAA 4 cut(s) 489, 687, 755, 1452
TscAI CASTG 4 cut(s) 385, 2047, 2062, 2326
TseFI GTSAC 2 cut(s) 161, 1521
TseI GCWGC 5 cut(s) 661, 1232, 1250, 2189, 2333
Tsp45I GTSAC 2 cut(s) 161, 1521
TspRI CASTG 4 cut(s) 385, 2047, 2062, 2326
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 6 cut(s) 731, 809, 1135, 1550, 1628, 2005
XapI RAATTY 3 cut(s) 1502, 1511, 1680
XceI RCATGY 2 cut(s) 231, 1019
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 1361
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 458, 1229
ZraI GACGTC 1 cut(s) 1907
ZrmI AGTACT 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.