Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

21599354 .. 21601343

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGTACAACCAATTCGCCGATCAATCCTCCATGTCCAACAAGGGCACAAAGAGAGAGTTCAGCAATGTCCAGGACTCCGAAGATGGCGAGGAAACCTTGGTCAATGCAATGAAAAGAATCAAGCTCTCATCAGATAATGGGGACTCATCTCAAGAACCAAAGATCATGGAGACGAAGAAGGATGTTGGGTACGAAGACGTAGGTGGTATGAGGATACAGATGACTCAGATTCGTGAGTTAGTGGAGCTTCCATTGAAGCAGCCTAAGTTGTTTAAAACCATTGGAGTGAAGCCTTCAAAGGGCATTCTTCTCTATGGTCCTCCCGGCTCGGGCAAGACTCTCATTGCCCGAGCCATTGCGAGCGAGACGGGGGCTTTGTTTTTGTGCGTCAATGGGCCGGAGATCATGTCGAAAATGGCTGGGGAGAGTGAGAGTAATCTAAGGAAGGTTTTCGAGGAGGCGGAGAAGAATGCACCATCCATTGTGTTTATAGATGAGATTGACTCGATTGCTCCTAAGAGAGAGAAGACTAATGGGGAAGTTGAGAGGAGGATTGTGTCACAACTCTTGACACTCATGGATGGAATGAAGTCGAAAGGAAGGGTGGTTGTTATTGGGGCAACTAATCGGCCTAATAGTATTGACCCGGCTCTTAGGCGAGGTGGAAGATTTGATAGGGAGATAGATATTGGTGTTCCGGATGAAGCCGGGCGGCTTGAGGTGCTTCGAATCCATACCAAGAACATGAAGCTTGGGGAGGATGTGGAGTTGGAGAAGATAGCTAAGGAGACACATGGGTATGTTGGTGCAGATTTAGCTGCATTGTGCACTGAGGCTGCGCTTCAATGCATTAGAGAGAATATGGATGAAATTGACTGGGAAGATCAGGAGACATTAGATGCTGAGATGCTTGGCTCAATGAAAGTTGGAAATGAGCACTTTCGGATTGCCTTGCGAGCAAGCAGCCCGTCTGCTCTTCGCGAAACAGCTGTTGAAGTGCCGAATATGACTTGGGATGCTATCGGGGGTCTCGAGAATGTGAAGAGGGAGCTTCAGGAGACTGTTCAGTATCCTGTAGAGCATCCGGAGAAGTTTGAGATATATGGGATGTCACCCTCAAAGGGGGTTCTTTTCTATGGCCCTCCTGGATGTGGGAAGACTCTTTTGGCCAAGGCTGTTGCTAATGAGTGTCAGGCAAACTTTATTAGTATCAAGGGGGAATTGCTTACAAGTGGGTTTGGAGAGAGTGAGGCGAATGTGAAGGAAATCTTCGACAAGGCTAGAGGGTCTGCTCCCTGTGTCCTCTTCTTTGATGAACTAGATTCCATTGCTACTCAGAGAAGTAGTAATGCTGTAGGTGGTGGTGGTGCTGCTGATAGGGTTTTAAACCAACTGCTAACAGAAATGGATGGATTGTCTGCCAAGAAAACTGTCTTTGTTATTGCAGCCACCAACAGACCTGACATTATAGACCCTGCACTTCTCCGTCCAGGACGTCTAGATCAATTGATTTACATCCCTCTCCCTGATGAGGAATCCCGCTATGAAATATTCAAGGCCTGCTTGAGGAAGTCTCCAGTTTCCGAAGATGTGAACATCAGAGCTCTTGCAAAGGGGACTCGAGGATTTAGTGGTGCTGATATCACAGAAATATGCCAGCGTGCCTGCAAATATGCCATCAGAGAGAACATTGAGAATGATATCAAAAGGGAGATGGGCAGAAGTAAGAGTTGTGAATATATGCAGGAGGATGAAATGGCAGAGATCAGGGCAGCTCACTTCGTAGAGTCGATGAAGTATGCTCGTCGAAGTGTTAGTGATTCCGACATCCGAAAATATAAAGCATATGCACAGACATTGCAGCAGTCTCGAGGGTTTGGAATAGACCAGTTTAATTTTACAGGAAGGGGTTCCCGTGCTGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

643

Amino Acids

70.93

Weight (kDa)

5.39

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RuvB_N	PF05496	101 - 175	2.5e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	102 - 231	3.9e-48	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	254 - 297	8.1e-18	AAA+ lid domain
AAA	PF00004	376 - 508	1.3e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	530 - 569	1.1e-11	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1498
AccII	CGCG	1 cut(s)	981
AccIII	TCCGGA	2 cut(s)	697, 1084
AciI	CCGC	3 cut(s)	461, 712, 1540
AcoI	YGGCCR	1 cut(s)	1167
AcuI	CTGAAG	1 cut(s)	1037
AcyI	GRCGYC	1 cut(s)	1495
AfaI	GTAC	2 cut(s)	5, 191
AfiI	CCNNNNNNNGG	7 cut(s)	299, 329, 1121, 1122, 1151, 1531, 1566
AgsI	TTSAA	5 cut(s)	256, 297, 845, 995, 1555
AjnI	CCWGG	3 cut(s)	69, 1144, 1489
AjuI	GAANNNNNNNTTGG	2 cut(s)	1148, 1180
AluBI	AGCT	9 cut(s)	124, 247, 751, 782, 818, 989, 1051, 1604, 1775
AluI	AGCT	9 cut(s)	124, 247, 751, 782, 818, 989, 1051, 1604, 1775
Alw21I	GWGCWC	3 cut(s)	830, 939, 1606
Alw26I	GTCTC	8 cut(s)	164, 359, 782, 884, 1034, 1052, 1578, 1872
Alw44I	GTGCAC	1 cut(s)	826
Ama87I	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
Aor13HI	TCCGGA	2 cut(s)	697, 1084
AoxI	GGCC	5 cut(s)	395, 629, 1138, 1167, 1557
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	9 cut(s)	259, 818, 836, 963, 1370, 1445, 1772, 1861, 1919
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
Asp700I	GAANNNNTTC	2 cut(s)	449, 1909
AspLEI	GCGC	1 cut(s)	841
AspS9I	GGNCC	3 cut(s)	317, 395, 1139
AsuC2I	CCSGG	3 cut(s)	324, 647, 709
AsuHPI	GGTGA	1 cut(s)	1104
AsuII	TTCGAA	1 cut(s)	727
AvaI	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	47, 830
BalI	TGGCCA	1 cut(s)	1169
BanII	GRGCYC	1 cut(s)	1606
BbsI	GAAGAC	3 cut(s)	201, 533, 1163
Bbv12I	GWGCWC	3 cut(s)	830, 939, 1606
BbvI	GCAGC	9 cut(s)	271, 805, 823, 975, 1357, 1457, 1784, 1873, 1906
BccI	CCATC	6 cut(s)	77, 484, 575, 1403, 1685, 1708
BcgI	CGANNNNNNTGC	2 cut(s)	1850, 1884
BciT130I	CCWGG	3 cut(s)	71, 1146, 1491
BciVI	GTATCC	2 cut(s)	207, 1080
BcnI	CCSGG	3 cut(s)	324, 647, 709
BcoDI	GTCTC	8 cut(s)	164, 359, 782, 884, 1034, 1052, 1578, 1872
BfaI	CTAG	3 cut(s)	1281, 1319, 1499
BfmI	CTRYAG	2 cut(s)	1074, 1353
BfuI	GTATCC	2 cut(s)	207, 1080
Bme1390I	CCNGG	6 cut(s)	71, 324, 647, 709, 1146, 1491
Bme18I	GGWCC	1 cut(s)	317
BmeT110I	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
BmgT120I	GGNCC	3 cut(s)	317, 395, 1139
BmiI	GGNNCC	1 cut(s)	1912
BmrFI	CCNGG	6 cut(s)	71, 324, 647, 709, 1146, 1491
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	4 cut(s)	889, 897, 1006, 1090
BmuI	ACTGGG	1 cut(s)	886
BpiI	GAAGAC	3 cut(s)	201, 533, 1163
BplI	GAGNNNNNCTC	4 cut(s)	488, 520, 1558, 1590
BpmI	CTGGAG	1 cut(s)	1560
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	1 cut(s)	727
BpuEI	CTTGAG	3 cut(s)	135, 737, 1585
BpuMI	CCSGG	3 cut(s)	324, 647, 709
BsaBI	GATNNNNATC	1 cut(s)	1514
BsaHI	GRCGYC	1 cut(s)	1495
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	2 cut(s)	96, 1170
BsaWI	WCCGGW	2 cut(s)	697, 1084
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	7 cut(s)	299, 329, 1121, 1122, 1151, 1531, 1566
Bse1I	ACTGG	3 cut(s)	881, 1577, 1888
Bse3DI	GCAATG	6 cut(s)	70, 114, 342, 354, 1326, 1856
Bse8I	GATNNNNATC	1 cut(s)	1514
BseAI	TCCGGA	2 cut(s)	697, 1084
BseBI	CCWGG	3 cut(s)	71, 1146, 1491
BseDI	CCNNGG	2 cut(s)	96, 1170
BseJI	GATNNNNATC	1 cut(s)	1514
BseLI	CCNNNNNNNGG	7 cut(s)	299, 329, 1121, 1122, 1151, 1531, 1566
BseMI	GCAATG	6 cut(s)	70, 114, 342, 354, 1326, 1856
BseMII	CTCAG	4 cut(s)	239, 822, 894, 1349
BseNI	ACTGG	3 cut(s)	881, 1577, 1888
BseRI	GAGGAG	2 cut(s)	470, 562
BseSI	GKGCMC	2 cut(s)	47, 830
BseXI	GCAGC	9 cut(s)	271, 805, 823, 975, 1357, 1457, 1784, 1873, 1906
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	2 cut(s)	828, 1461
Bsh1236I	CGCG	1 cut(s)	981
BshFI	GGCC	5 cut(s)	397, 631, 1140, 1169, 1559
BsiHKAI	GWGCWC	3 cut(s)	830, 939, 1606
BsiHKCI	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
BsiSI	CCGG	6 cut(s)	324, 398, 647, 698, 708, 1085
BslFI	GGGAC	2 cut(s)	155, 1630
BslI	CCNNNNNNNGG	7 cut(s)	299, 329, 1121, 1122, 1151, 1531, 1566
BsmAI	GTCTC	8 cut(s)	164, 359, 782, 884, 1034, 1052, 1578, 1872
BsmBI	CGTCTC	2 cut(s)	164, 359
BsmFI	GGGAC	2 cut(s)	155, 1630
BsmI	GAATGC	2 cut(s)	303, 475
BsnI	GGCC	5 cut(s)	397, 631, 1140, 1169, 1559
Bso31I	GGTCTC	1 cut(s)	1034
BsoBI	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
Bsp119I	TTCGAA	1 cut(s)	727
Bsp1286I	GDGCHC	4 cut(s)	47, 830, 939, 1606
Bsp13I	TCCGGA	2 cut(s)	697, 1084
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
Bsp68I	TCGCGA	1 cut(s)	981
BspACI	CCGC	3 cut(s)	461, 712, 1540
BspANI	GGCC	5 cut(s)	397, 631, 1140, 1169, 1559
BspCNI	CTCAG	4 cut(s)	238, 823, 895, 1348
BspEI	TCCGGA	2 cut(s)	697, 1084
BspFNI	CGCG	1 cut(s)	981
BspLI	GGNNCC	1 cut(s)	1912
BspQI	GCTCTTC	1 cut(s)	981
BspT104I	TTCGAA	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	1034
BsrDI	GCAATG	6 cut(s)	70, 114, 342, 354, 1326, 1856
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	881, 1577, 1888
BssECI	CCNNGG	2 cut(s)	96, 1170
BssMI	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
BssNI	GRCGYC	1 cut(s)	1495
BssT1I	CCWWGG	2 cut(s)	96, 1170
Bst2UI	CCWGG	3 cut(s)	71, 1146, 1491
Bst4CI	ACNGT	2 cut(s)	1063, 1432
Bst6I	CTCTTC	3 cut(s)	981, 1037, 1310
BstACI	GRCGYC	1 cut(s)	1495
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	727
BstC8I	GCNNGC	7 cut(s)	361, 957, 961, 1561, 1658, 1662, 1666
BstDEI	CTNAG	9 cut(s)	225, 264, 440, 516, 653, 783, 831, 903, 1335
BstENI	CCTNNNNNAGG	1 cut(s)	1564
BstFNI	CGCG	1 cut(s)	981
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	6 cut(s)	22, 165, 405, 886, 1504, 1767
BstMAI	GTCTC	8 cut(s)	164, 359, 782, 884, 1034, 1052, 1578, 1872
BstMBI	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
BstMWI	GCNNNNNNNGC	3 cut(s)	721, 815, 956
BstNI	CCWGG	3 cut(s)	71, 1146, 1491
BstSCI	CCNGG	6 cut(s)	69, 322, 645, 707, 1144, 1489
BstSFI	CTRYAG	2 cut(s)	1074, 1353
BstSLI	GKGCMC	2 cut(s)	47, 830
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	9 cut(s)	271, 805, 823, 975, 1357, 1457, 1784, 1873, 1906
BstV2I	GAAGAC	3 cut(s)	201, 533, 1163
BsuI	GTATCC	2 cut(s)	207, 1080
BsuRI	GGCC	5 cut(s)	397, 631, 1140, 1169, 1559
BtsIMutI	CAGTG	1 cut(s)	828
BtuMI	TCGCGA	1 cut(s)	981
Cac8I	GCNNGC	7 cut(s)	361, 957, 961, 1561, 1658, 1662, 1666
CfoI	GCGC	1 cut(s)	841
Cfr13I	GGNCC	3 cut(s)	317, 395, 1139
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	4, 190
CviAII	CATG	6 cut(s)	31, 166, 406, 577, 745, 794
CviQI	GTAC	2 cut(s)	4, 190
DdeI	CTNAG	9 cut(s)	225, 264, 440, 516, 653, 783, 831, 903, 1335
DpnI	GATC	6 cut(s)	21, 164, 404, 885, 1503, 1766
DpnII	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
DraI	TTTAAA	2 cut(s)	274, 1386
EaeI	YGGCCR	1 cut(s)	1167
Eam1104I	CTCTTC	3 cut(s)	981, 1037, 1310
EarI	CTCTTC	3 cut(s)	981, 1037, 1310
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	1604
Eco130I	CCWWGG	2 cut(s)	96, 1170
Eco147I	AGGCCT	1 cut(s)	1559
Eco24I	GRGCYC	1 cut(s)	1606
Eco31I	GGTCTC	1 cut(s)	1034
Eco32I	GATATC	2 cut(s)	1642, 1702
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	1604
Eco57I	CTGAAG	1 cut(s)	1037
Eco88I	CYCGRG	5 cut(s)	328, 348, 1031, 1620, 1869
EcoICRI	GAGCTC	1 cut(s)	1604
EcoNI	CCTNNNNNAGG	1 cut(s)	1564
EcoRII	CCWGG	3 cut(s)	69, 1144, 1489
EcoRV	GATATC	2 cut(s)	1642, 1702
EcoT14I	CCWWGG	2 cut(s)	96, 1170
EcoT22I	ATGCAT	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	1606
ErhI	CCWWGG	2 cut(s)	96, 1170
Esp3I	CGTCTC	2 cut(s)	164, 359
FaeI	CATG	6 cut(s)	34, 169, 409, 580, 748, 797
FalI	AAGNNNNNCTT	4 cut(s)	1253, 1285, 1547, 1579
FaqI	GGGAC	2 cut(s)	155, 1630
FatI	CATG	6 cut(s)	30, 165, 405, 576, 744, 793
FauI	CCCGC	1 cut(s)	1547
FauNDI	CATATG	1 cut(s)	1846
FriOI	GRGCYC	1 cut(s)	1606
FspBI	CTAG	3 cut(s)	1281, 1319, 1499
GlaI	GCGC	1 cut(s)	840
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	1560
HaeIII	GGCC	5 cut(s)	397, 631, 1140, 1169, 1559
HapII	CCGG	6 cut(s)	324, 398, 647, 698, 708, 1085
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	841
Hin1I	GRCGYC	1 cut(s)	1495
Hin1II	CATG	6 cut(s)	34, 169, 409, 580, 748, 797
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HindIII	AAGCTT	1 cut(s)	749
HpaII	CCGG	6 cut(s)	324, 398, 647, 698, 708, 1085
HphI	GGTGA	1 cut(s)	1104
Hpy166II	GTNNAC	2 cut(s)	828, 1594
Hpy8I	GTNNAC	2 cut(s)	828, 1594
Hpy99I	CGWCG	1 cut(s)	1809
HpyAV	CCTTC	6 cut(s)	172, 303, 439, 594, 1255, 1899
HpyCH4III	ACNGT	2 cut(s)	1063, 1432
HpyCH4IV	ACGT	2 cut(s)	198, 1495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	721, 815, 956
HpyF3I	CTNAG	9 cut(s)	225, 264, 440, 516, 653, 783, 831, 903, 1335
HpySE526I	ACGT	2 cut(s)	198, 1495
Hsp92I	GRCGYC	1 cut(s)	1495
Hsp92II	CATG	6 cut(s)	34, 169, 409, 580, 748, 797
HspAI	GCGC	1 cut(s)	839
Kpn2I	TCCGGA	2 cut(s)	697, 1084
Kzo9I	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
LguI	GCTCTTC	1 cut(s)	981
LmnI	GCTCC	4 cut(s)	244, 517, 1048, 1297
Lsp1109I	GCAGC	9 cut(s)	271, 805, 823, 975, 1357, 1457, 1784, 1873, 1906
LweI	GCATC	4 cut(s)	889, 897, 1006, 1090
MaeI	CTAG	3 cut(s)	1281, 1319, 1499
MaeII	ACGT	2 cut(s)	198, 1495
MaeIII	GTNAC	2 cut(s)	558, 1110
MalI	GATC	6 cut(s)	21, 164, 404, 885, 1503, 1766
MboI	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
MfeI	CAATTG	1 cut(s)	1505
MhlI	GDGCHC	4 cut(s)	47, 830, 939, 1606
MlsI	TGGCCA	1 cut(s)	1169
MluCI	AATT	5 cut(s)	11, 870, 1220, 1505, 1894
MluNI	TGGCCA	1 cut(s)	1169
MlyI	GAGTC	8 cut(s)	68, 137, 217, 331, 497, 1153, 1612, 1796
MmeI	TCCRAC	4 cut(s)	60, 750, 907, 1848
Mox20I	TGGCCA	1 cut(s)	1169
Mph1103I	ATGCAT	1 cut(s)	851
MroI	TCCGGA	2 cut(s)	697, 1084
MroXI	GAANNNNTTC	2 cut(s)	449, 1909
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	3 cut(s)	273, 1385, 1893
MslI	CAYNNNNRTG	2 cut(s)	284, 798
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	6 cut(s)	324, 398, 647, 698, 708, 1085
MspR9I	CCNGG	6 cut(s)	71, 324, 647, 709, 1146, 1491
MunI	CAATTG	1 cut(s)	1505
Mva1269I	GAATGC	2 cut(s)	303, 475
MvaI	CCWGG	3 cut(s)	71, 1146, 1491
MvnI	CGCG	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	721, 815, 956
NciI	CCSGG	3 cut(s)	324, 647, 709
NdeI	CATATG	1 cut(s)	1846
NdeII	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
NlaIII	CATG	6 cut(s)	34, 169, 409, 580, 748, 797
NlaIV	GGNNCC	1 cut(s)	1912
NmuCI	GTSAC	2 cut(s)	558, 1110
NruI	TCGCGA	1 cut(s)	981
NsiI	ATGCAT	1 cut(s)	851
NspV	TTCGAA	1 cut(s)	727
PaeR7I	CTCGAG	3 cut(s)	1031, 1620, 1869
PceI	AGGCCT	1 cut(s)	1559
PciSI	GCTCTTC	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	1029
PctI	GAATGC	2 cut(s)	303, 475
PdmI	GAANNNNTTC	2 cut(s)	449, 1909
PfeI	GAWTC	6 cut(s)	117, 229, 729, 1322, 1535, 1820
PfoI	TCCNGGA	3 cut(s)	69, 1144, 1489
PleI	GAGTC	8 cut(s)	68, 137, 217, 331, 497, 1153, 1612, 1795
PpsI	GAGTC	8 cut(s)	68, 137, 217, 331, 497, 1153, 1612, 1795
Psp124BI	GAGCTC	1 cut(s)	1606
Psp6I	CCWGG	3 cut(s)	69, 1144, 1489
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	3 cut(s)	69, 1144, 1489
PspN4I	GGNNCC	1 cut(s)	1912
PspPI	GGNCC	3 cut(s)	317, 395, 1139
PspXI	VCTCGAGB	1 cut(s)	1620
PvuII	CAGCTG	1 cut(s)	989
RruI	TCGCGA	1 cut(s)	981
RsaI	GTAC	2 cut(s)	5, 191
RsaNI	GTAC	2 cut(s)	4, 190
RseI	CAYNNNNRTG	2 cut(s)	284, 798
SacI	GAGCTC	1 cut(s)	1606
SapI	GCTCTTC	1 cut(s)	981
SaqAI	TTAA	3 cut(s)	273, 1385, 1893
Sau3AI	GATC	6 cut(s)	19, 162, 402, 883, 1501, 1764
Sau96I	GGNCC	3 cut(s)	317, 395, 1139
SchI	GAGTC	8 cut(s)	68, 137, 217, 331, 497, 1153, 1612, 1796
ScrFI	CCNGG	6 cut(s)	71, 324, 647, 709, 1146, 1491
SduI	GDGCHC	4 cut(s)	47, 830, 939, 1606
SfaNI	GCATC	4 cut(s)	889, 897, 1006, 1090
SfcI	CTRYAG	2 cut(s)	1074, 1353
Sfr274I	CTCGAG	3 cut(s)	1031, 1620, 1869
SfuI	TTCGAA	1 cut(s)	727
SinI	GGWCC	1 cut(s)	317
SlaI	CTCGAG	3 cut(s)	1031, 1620, 1869
SmiMI	CAYNNNNRTG	2 cut(s)	284, 798
SmlI	CTYRAG	6 cut(s)	150, 716, 1031, 1564, 1620, 1869
SmoI	CTYRAG	6 cut(s)	150, 716, 1031, 1564, 1620, 1869
Sse9I	AATT	5 cut(s)	11, 870, 1220, 1505, 1894
SseBI	AGGCCT	1 cut(s)	1559
SsiI	CCGC	3 cut(s)	461, 712, 1540
SspI	AATATT	1 cut(s)	1551
SspMI	CTAG	3 cut(s)	1281, 1319, 1499
SstI	GAGCTC	1 cut(s)	1606
StuI	AGGCCT	1 cut(s)	1559
StyD4I	CCNGG	6 cut(s)	69, 322, 645, 707, 1144, 1489
StyI	CCWWGG	2 cut(s)	96, 1170
TaaI	ACNGT	2 cut(s)	1063, 1432
TaiI	ACGT	2 cut(s)	201, 1498
TasI	AATT	5 cut(s)	11, 870, 1220, 1505, 1894
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	6 cut(s)	117, 229, 729, 1322, 1535, 1820
Tru1I	TTAA	3 cut(s)	273, 1385, 1893
Tru9I	TTAA	3 cut(s)	273, 1385, 1893
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	558, 1110
TseI	GCWGC	9 cut(s)	259, 818, 836, 963, 1370, 1445, 1772, 1861, 1919
Tsp45I	GTSAC	2 cut(s)	558, 1110
TspGWI	ACGGA	1 cut(s)	1475
TspRI	CASTG	1 cut(s)	835
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	1564
XbaI	TCTAGA	1 cut(s)	1498
XhoI	CTCGAG	3 cut(s)	1031, 1620, 1869
XmnI	GAANNNNTTC	2 cut(s)	449, 1909
XspI	CTAG	3 cut(s)	1281, 1319, 1499
ZraI	GACGTC	1 cut(s)	1496
Zsp2I	ATGCAT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.