Rorug05G0590900

Cell Division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001165
Physical Location & Seq
Reverse (-)
78905112 .. 78907729
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0590900.1

Sequence Viewer

Length: 498 bp
ATGACAACATCGTCGGCATCAACCTCGACGTGGGCGTCCACGACCTCTGTGTCTTCCTCAGGGAAGAGAATCCAGAGAGAAATGGTTGAGCTCAACACGGACCCACCTCCTGATTGCTCTGCTGGGCCCAAGGGTGACAATCTCTACCACTGGGTTGCCACCATCATTGGCCCTCCAGGAACACCATACCAAGGTGGCATATACTTCCTTGACATTACATTTCCTGGTGATTATCCATTTAAACCTCCAAAGATCGTATTCAGGACTCGAGTCTTTCATTGCAATGTCGATGCTTCTGGTAATGTGAGTTTGGAAATTGTAAAGGATGGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTAGCAATTCGGTCCATTTTCACAAAACCTGATCCTTATAATCCGCTTGTCCCTAGCATCGCCCATTTGTACTTGGCAGATAAAGCTAAACACGATGAACTAGCTTCTGAGTGGACAATGCGATTCGCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

165

Amino Acids

18.13

Weight (kDa)

7.78

Isoelectric Point (pI)

21.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 23 - 159 6.2e-43 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AasI GACNNNNNNGTC 3 cut(s) 10, 34, 49
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 30, 191
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 2 cut(s) 175, 223
AluBI AGCT 4 cut(s) 91, 341, 449, 467
AluI AGCT 4 cut(s) 91, 341, 449, 467
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 125, 169
ApaI GGGCCC 1 cut(s) 129
AspS9I GGNCC 5 cut(s) 100, 125, 126, 170, 375
AsuHPI GGTGA 2 cut(s) 146, 239
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 100, 375
AxyI CCTNAGG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 2 cut(s) 93, 129
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 2 cut(s) 170, 320
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 2 cut(s) 177, 225
BfaI CTAG 3 cut(s) 365, 417, 464
Bme1390I CCNGG 2 cut(s) 177, 225
Bme18I GGWCC 2 cut(s) 100, 375
BmeT110I CYCGRG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 5 cut(s) 100, 125, 126, 170, 375
BmiI GGNNCC 2 cut(s) 102, 127
BmrFI CCNGG 2 cut(s) 177, 225
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 26, 280, 429
BmuI ACTGGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 129, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 191
Bse1I ACTGG 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 58
Bse3DI GCAATG 2 cut(s) 277, 289
BseBI CCWGG 2 cut(s) 177, 225
BseDI CCNNGG 2 cut(s) 129, 190
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 30, 191
BseMI GCAATG 2 cut(s) 277, 289
BseMII CTCAG 2 cut(s) 72, 462
BseNI ACTGG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 122
BshFI GGCC 2 cut(s) 127, 171
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 30, 191
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 127, 171
BsoBI CYCGRG 1 cut(s) 267
Bsp120I GGGCCC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 93, 129
Bsp143I GATC 2 cut(s) 252, 394
BspACI CCGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 127, 171
BspCNI CTCAG 2 cut(s) 71, 463
BspLI GGNNCC 2 cut(s) 102, 127
BspPI GGATC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 277, 289
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 129, 190
BssMI GATC 2 cut(s) 252, 394
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 129, 190
Bst2UI CCWGG 2 cut(s) 177, 225
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 58, 471
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 255, 397
BstMBI GATC 2 cut(s) 252, 394
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 2 cut(s) 177, 225
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 175, 223
BstSLI GKGCMC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 127, 171
BtgZI GCGATG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 148
Cfr13I GGNCC 5 cut(s) 100, 125, 126, 170, 375
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviJI RGCY 6 cut(s) 91, 127, 171, 341, 449, 467
CviKI_1 RGCY 6 cut(s) 91, 127, 171, 341, 449, 467
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 58, 471
DpnI GATC 2 cut(s) 254, 396
DpnII GATC 2 cut(s) 252, 394
DraI TTTAAA 1 cut(s) 241
DrdI GACNNNNNNGTC 3 cut(s) 10, 34, 49
DseDI GACNNNNNNGTC 3 cut(s) 10, 34, 49
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 129, 190
Eco24I GRGCYC 2 cut(s) 93, 129
Eco47I GGWCC 2 cut(s) 100, 375
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 175, 223
EcoT14I CCWWGG 2 cut(s) 129, 190
EcoT38I GRGCYC 2 cut(s) 93, 129
ErhI CCWWGG 2 cut(s) 129, 190
FaiI YATR 4 cut(s) 187, 200, 202, 402
FaqI GGGAC 1 cut(s) 398
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 2 cut(s) 93, 129
FspBI CTAG 3 cut(s) 365, 417, 464
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 127, 171
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
HinfI GANTC 5 cut(s) 69, 265, 270, 334, 486
HphI GGTGA 2 cut(s) 146, 239
Hpy166II GTNNAC 2 cut(s) 39, 477
Hpy188I TCNGA 2 cut(s) 345, 472
Hpy188III TCNNGA 3 cut(s) 73, 110, 262
Hpy8I GTNNAC 2 cut(s) 39, 477
Hpy99I CGWCG 2 cut(s) 16, 31
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 2 cut(s) 58, 471
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 252, 394
LweI GCATC 3 cut(s) 26, 280, 429
MaeI CTAG 3 cut(s) 365, 417, 464
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 254, 396
MboI GATC 2 cut(s) 252, 394
MboII GAAGA 2 cut(s) 45, 76
MhlI GDGCHC 2 cut(s) 93, 129
MluCI AATT 3 cut(s) 315, 348, 369
MlyI GAGTC 3 cut(s) 259, 279, 343
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 6 cut(s) 34, 55, 67, 117, 183, 255
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 177, 225
MvaI CCWGG 2 cut(s) 177, 225
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 2 cut(s) 252, 394
NlaIV GGNNCC 2 cut(s) 102, 127
NmuCI GTSAC 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 2 cut(s) 69, 486
PfoI TCCNGGA 1 cut(s) 175
PleI GAGTC 3 cut(s) 259, 278, 342
PpsI GAGTC 3 cut(s) 259, 278, 342
PshAI GACNNNNGTC 1 cut(s) 269
PsiI TTATAA 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 175, 223
PspFI CCCAGC 1 cut(s) 122
PspGI CCWGG 2 cut(s) 175, 223
PspN4I GGNNCC 2 cut(s) 102, 127
PspOMI GGGCCC 1 cut(s) 125
PspPI GGNCC 5 cut(s) 100, 125, 126, 170, 375
PspXI VCTCGAGB 1 cut(s) 267
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 2 cut(s) 252, 394
Sau96I GGNCC 5 cut(s) 100, 125, 126, 170, 375
SchI GAGTC 3 cut(s) 259, 279, 343
ScrFI CCNGG 2 cut(s) 177, 225
SduI GDGCHC 2 cut(s) 93, 129
SfaNI GCATC 3 cut(s) 26, 280, 429
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 100, 375
SlaI CTCGAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 315, 348, 369
SsiI CCGC 1 cut(s) 407
SspMI CTAG 3 cut(s) 365, 417, 464
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 175, 223
StyI CCWWGG 2 cut(s) 129, 190
TaiI ACGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 26, 268, 288
TaqII GACCGA 1 cut(s) 363
TasI AATT 3 cut(s) 315, 348, 369
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 2 cut(s) 69, 486
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 266, 474
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 100, 375
XhoI CTCGAG 1 cut(s) 267
XspI CTAG 3 cut(s) 365, 417, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.