Cell division
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CDC48_N | PF02359 | 30 - 111 | 8.3e-23 | Cell division protein 48 (CDC48), N-terminal domain |
| CDC48_2 | PF02933 | 131 - 195 | 1.6e-11 | Cell division protein 48 (CDC48), domain 2 |
| AAA | PF00004 | 245 - 374 | 1.4e-47 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_3 | PF17862 | 397 - 440 | 5.1e-17 | AAA+ lid domain |
| AAA | PF00004 | 518 - 651 | 1.6e-46 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_3 | PF17862 | 673 - 713 | 5.7e-12 | AAA+ lid domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Acc16I | TGCGCA | 1 cut(s) | 2289 |
| AccB1I | GGYRCC | 2 cut(s) | 1235, 1874 |
| AccI | GTMKAC | 1 cut(s) | 99 |
| AccII | CGCG | 2 cut(s) | 134, 1713 |
| AciI | CCGC | 4 cut(s) | 1711, 1713, 1924, 2269 |
| AclWI | GGATC | 5 cut(s) | 55, 763, 1067, 1723, 1938 |
| AcsI | RAATTY | 3 cut(s) | 558, 1526, 1695 |
| AcuI | CTGAAG | 4 cut(s) | 6, 34, 1206, 1256 |
| AcvI | CACGTG | 1 cut(s) | 1033 |
| AcyI | GRCGYC | 1 cut(s) | 1141 |
| AfaI | GTAC | 5 cut(s) | 55, 416, 533, 1258, 2045 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 728, 758, 784, 1547, 1577, 1689, 1960 |
| AflIII | ACRYGT | 1 cut(s) | 242 |
| AjnI | CCWGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1101, 1133 |
| AleI | CACNNNNGTG | 1 cut(s) | 327 |
| Alw21I | GWGCWC | 1 cut(s) | 1365 |
| Alw26I | GTCTC | 2 cut(s) | 1478, 2007 |
| AlwI | GGATC | 5 cut(s) | 55, 763, 1067, 1723, 1938 |
| Ama87I | CYCGRG | 2 cut(s) | 65, 777 |
| AoxI | GGCC | 5 cut(s) | 438, 1564, 1680, 1707, 1921 |
| ApoI | RAATTY | 3 cut(s) | 558, 1526, 1695 |
| AspLEI | GCGC | 4 cut(s) | 72, 136, 2290, 2396 |
| AspS9I | GGNCC | 5 cut(s) | 746, 824, 1565, 1643, 1708 |
| AsuHPI | GGTGA | 4 cut(s) | 314, 473, 1530, 1796 |
| AvaI | CYCGRG | 2 cut(s) | 65, 777 |
| AvaII | GGWCC | 3 cut(s) | 746, 824, 1643 |
| AxyI | CCTNAGG | 3 cut(s) | 290, 869, 2163 |
| BaeGI | GKGCMC | 2 cut(s) | 1030, 1428 |
| BanI | GGYRCC | 2 cut(s) | 1235, 1874 |
| BauI | CACGAG | 1 cut(s) | 1023 |
| BbrPI | CACGTG | 1 cut(s) | 1033 |
| BbsI | GAAGAC | 1 cut(s) | 962 |
| Bbv12I | GWGCWC | 1 cut(s) | 1365 |
| BbvCI | CCTCAGC | 1 cut(s) | 693 |
| BccI | CCATC | 9 cut(s) | 145, 191, 224, 643, 913, 1004, 1285, 1402, 1832 |
| BceAI | ACGGC | 1 cut(s) | 767 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1229, 1263, 2357, 2391 |
| BciT130I | CCWGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| BciVI | GTATCC | 3 cut(s) | 205, 1210, 1506 |
| BclI | TGATCA | 1 cut(s) | 189 |
| BcoDI | GTCTC | 2 cut(s) | 1478, 2007 |
| BfaI | CTAG | 1 cut(s) | 1244 |
| BfuI | GTATCC | 3 cut(s) | 205, 1210, 1506 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 685 |
| BmcAI | AGTACT | 2 cut(s) | 55, 533 |
| Bme1390I | CCNGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| Bme18I | GGWCC | 3 cut(s) | 746, 824, 1643 |
| BmeT110I | CYCGRG | 2 cut(s) | 65, 777 |
| BmgT120I | GGNCC | 5 cut(s) | 746, 824, 1565, 1643, 1708 |
| BmiI | GGNNCC | 4 cut(s) | 576, 1237, 1644, 1876 |
| BmrFI | CCNGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| BmrI | ACTGGG | 1 cut(s) | 807 |
| BmuI | ACTGGG | 1 cut(s) | 807 |
| BpiI | GAAGAC | 1 cut(s) | 962 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 676, 708, 1987, 2019 |
| BpmI | CTGGAG | 4 cut(s) | 146, 455, 870, 1989 |
| Bpu10I | CCTNAGC | 2 cut(s) | 693, 1212 |
| BpuEI | CTTGAG | 3 cut(s) | 1166, 1478, 2014 |
| BsaAI | YACGTR | 1 cut(s) | 1033 |
| BsaHI | GRCGYC | 1 cut(s) | 1141 |
| BsaJI | CCNNGG | 5 cut(s) | 783, 1378, 1545, 1711, 2050 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 107, 137, 508, 538 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 728, 758, 784, 1547, 1577, 1689, 1960 |
| Bse1I | ACTGG | 4 cut(s) | 400, 802, 2006, 2353 |
| Bse21I | CCTNAGG | 3 cut(s) | 290, 869, 2163 |
| Bse3DI | GCAATG | 4 cut(s) | 222, 1755, 2175, 2294 |
| BseBI | CCWGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| BseDI | CCNNGG | 5 cut(s) | 783, 1378, 1545, 1711, 2050 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 728, 758, 784, 1547, 1577, 1689, 1960 |
| BseMI | GCAATG | 4 cut(s) | 222, 1755, 2175, 2294 |
| BseNI | ACTGG | 4 cut(s) | 400, 802, 2006, 2353 |
| BseSI | GKGCMC | 2 cut(s) | 1030, 1428 |
| BseYI | CCCAGC | 2 cut(s) | 990, 1790 |
| BsgI | GTGCAG | 1 cut(s) | 1890 |
| Bsh1236I | CGCG | 2 cut(s) | 134, 1713 |
| BshFI | GGCC | 5 cut(s) | 440, 1566, 1682, 1709, 1923 |
| BshNI | GGYRCC | 2 cut(s) | 1235, 1874 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1365 |
| BsiHKCI | CYCGRG | 2 cut(s) | 65, 777 |
| BslFI | GGGAC | 3 cut(s) | 59, 1656, 1951 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 728, 758, 784, 1547, 1577, 1689, 1960 |
| BsmAI | GTCTC | 2 cut(s) | 1478, 2007 |
| BsmFI | GGGAC | 3 cut(s) | 59, 1656, 1951 |
| BsmI | GAATGC | 2 cut(s) | 803, 904 |
| BsnI | GGCC | 5 cut(s) | 440, 1566, 1682, 1709, 1923 |
| BsoBI | CYCGRG | 2 cut(s) | 65, 777 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1030, 1365, 1428 |
| BspACI | CCGC | 4 cut(s) | 1711, 1713, 1924, 2269 |
| BspANI | GGCC | 5 cut(s) | 440, 1566, 1682, 1709, 1923 |
| BspFNI | CGCG | 2 cut(s) | 134, 1713 |
| BspLI | GGNNCC | 4 cut(s) | 576, 1237, 1644, 1876 |
| BspPI | GGATC | 5 cut(s) | 55, 763, 1067, 1723, 1938 |
| BspQI | GCTCTTC | 1 cut(s) | 1407 |
| BspT107I | GGYRCC | 2 cut(s) | 1235, 1874 |
| BsrDI | GCAATG | 4 cut(s) | 222, 1755, 2175, 2294 |
| BsrI | ACTGG | 4 cut(s) | 400, 802, 2006, 2353 |
| BssECI | CCNNGG | 5 cut(s) | 783, 1378, 1545, 1711, 2050 |
| BssNI | GRCGYC | 1 cut(s) | 1141 |
| BssSI | CACGAG | 1 cut(s) | 1023 |
| BssT1I | CCWWGG | 3 cut(s) | 1378, 1545, 2050 |
| Bst2BI | CACGAG | 1 cut(s) | 1023 |
| Bst2UI | CCWGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| Bst4CI | ACNGT | 7 cut(s) | 446, 536, 1067, 1414, 1489, 1861, 2417 |
| Bst6I | CTCTTC | 4 cut(s) | 35, 473, 1407, 1593 |
| BstACI | GRCGYC | 1 cut(s) | 1141 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2296, 2384 |
| BstBAI | YACGTR | 1 cut(s) | 1033 |
| BstC8I | GCNNGC | 7 cut(s) | 1182, 1711, 2087, 2091, 2095, 2242, 2392 |
| BstDSI | CCRYGG | 2 cut(s) | 783, 1711 |
| BstFNI | CGCG | 2 cut(s) | 134, 1713 |
| BstHHI | GCGC | 4 cut(s) | 72, 136, 2290, 2396 |
| BstMAI | GTCTC | 2 cut(s) | 1478, 2007 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 685, 694, 1244, 1796, 2296, 2384, 2393 |
| BstNI | CCWGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| BstNSI | RCATGY | 1 cut(s) | 246 |
| BstSCI | CCNGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| BstSLI | GKGCMC | 2 cut(s) | 1030, 1428 |
| BstUI | CGCG | 2 cut(s) | 134, 1713 |
| BstV2I | GAAGAC | 1 cut(s) | 962 |
| BstX2I | RGATCY | 1 cut(s) | 1715 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2020 |
| BstYI | RGATCY | 1 cut(s) | 1715 |
| Bsu36I | CCTNAGG | 3 cut(s) | 290, 869, 2163 |
| BsuI | GTATCC | 3 cut(s) | 205, 1210, 1506 |
| BsuRI | GGCC | 5 cut(s) | 440, 1566, 1682, 1709, 1923 |
| BtgI | CCRYGG | 2 cut(s) | 783, 1711 |
| BtgZI | GCGATG | 1 cut(s) | 2271 |
| BtsIMutI | CAGTG | 5 cut(s) | 393, 552, 680, 1280, 1639 |
| Cac8I | GCNNGC | 7 cut(s) | 1182, 1711, 2087, 2091, 2095, 2242, 2392 |
| CfoI | GCGC | 4 cut(s) | 72, 136, 2290, 2396 |
| Cfr13I | GGNCC | 5 cut(s) | 746, 824, 1565, 1643, 1708 |
| Cfr42I | CCGCGG | 1 cut(s) | 1714 |
| CseI | GACGC | 3 cut(s) | 967, 1130, 1904 |
| Csp6I | GTAC | 5 cut(s) | 54, 415, 532, 1257, 2044 |
| CviAII | CATG | 8 cut(s) | 243, 835, 962, 1006, 1174, 1223, 1660, 1725 |
| CviQI | GTAC | 5 cut(s) | 54, 415, 532, 1257, 2044 |
| DraI | TTTAAA | 1 cut(s) | 703 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Eam1104I | CTCTTC | 4 cut(s) | 35, 473, 1407, 1593 |
| EarI | CTCTTC | 4 cut(s) | 35, 473, 1407, 1593 |
| Eco130I | CCWWGG | 3 cut(s) | 1378, 1545, 2050 |
| Eco147I | AGGCCT | 1 cut(s) | 440 |
| Eco32I | GATATC | 2 cut(s) | 1894, 2266 |
| Eco47I | GGWCC | 3 cut(s) | 746, 824, 1643 |
| Eco57I | CTGAAG | 4 cut(s) | 6, 34, 1206, 1256 |
| Eco72I | CACGTG | 1 cut(s) | 1033 |
| Eco81I | CCTNAGG | 3 cut(s) | 290, 869, 2163 |
| Eco88I | CYCGRG | 2 cut(s) | 65, 777 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1643 |
| EcoRII | CCWGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| EcoRV | GATATC | 2 cut(s) | 1894, 2266 |
| EcoT14I | CCWWGG | 3 cut(s) | 1378, 1545, 2050 |
| ErhI | CCWWGG | 3 cut(s) | 1378, 1545, 2050 |
| FaeI | CATG | 8 cut(s) | 246, 838, 965, 1009, 1177, 1226, 1663, 1728 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 32, 64, 1976, 2008, 2394 |
| FaqI | GGGAC | 3 cut(s) | 59, 1656, 1951 |
| FatI | CATG | 8 cut(s) | 242, 834, 961, 1005, 1173, 1222, 1659, 1724 |
| FauI | CCCGC | 1 cut(s) | 1718 |
| FbaI | TGATCA | 1 cut(s) | 189 |
| FblI | GTMKAC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 1244 |
| FspI | TGCGCA | 1 cut(s) | 2289 |
| GlaI | GCGC | 4 cut(s) | 71, 135, 2289, 2395 |
| GsaI | CCCAGC | 2 cut(s) | 994, 1794 |
| GsuI | CTGGAG | 4 cut(s) | 146, 455, 870, 1989 |
| HaeIII | GGCC | 5 cut(s) | 440, 1566, 1682, 1709, 1923 |
| HgaI | GACGC | 3 cut(s) | 967, 1130, 1904 |
| HhaI | GCGC | 4 cut(s) | 72, 136, 2290, 2396 |
| Hin1I | GRCGYC | 1 cut(s) | 1141 |
| Hin1II | CATG | 8 cut(s) | 246, 838, 965, 1009, 1177, 1226, 1663, 1728 |
| Hin6I | GCGC | 4 cut(s) | 70, 134, 2288, 2394 |
| HinP1I | GCGC | 4 cut(s) | 70, 134, 2288, 2394 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HindIII | AAGCTT | 2 cut(s) | 876, 1178 |
| HphI | GGTGA | 4 cut(s) | 314, 473, 1530, 1796 |
| Hpy166II | GTNNAC | 7 cut(s) | 100, 322, 358, 1257, 1475, 2023, 2046 |
| Hpy188I | TCNGA | 7 cut(s) | 25, 657, 1062, 1085, 1283, 1767, 2368 |
| Hpy8I | GTNNAC | 7 cut(s) | 100, 322, 358, 1257, 1475, 2023, 2046 |
| Hpy99I | CGWCG | 3 cut(s) | 104, 131, 134 |
| HpyAV | CCTTC | 8 cut(s) | 70, 202, 380, 1080, 1280, 1551, 2119, 2131 |
| HpyCH4III | ACNGT | 7 cut(s) | 446, 536, 1067, 1414, 1489, 1861, 2417 |
| HpyCH4IV | ACGT | 1 cut(s) | 1032 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 685, 694, 1244, 1796, 2296, 2384, 2393 |
| HpySE526I | ACGT | 1 cut(s) | 1032 |
| Hsp92I | GRCGYC | 1 cut(s) | 1141 |
| Hsp92II | CATG | 8 cut(s) | 246, 838, 965, 1009, 1177, 1226, 1663, 1728 |
| HspAI | GCGC | 4 cut(s) | 70, 134, 2288, 2394 |
| Ksp22I | TGATCA | 1 cut(s) | 189 |
| KspI | CCGCGG | 1 cut(s) | 1714 |
| LguI | GCTCTTC | 1 cut(s) | 1407 |
| LmnI | GCTCC | 8 cut(s) | 141, 165, 282, 550, 574, 673, 946, 1726 |
| MaeI | CTAG | 1 cut(s) | 1244 |
| MaeII | ACGT | 1 cut(s) | 1032 |
| MaeIII | GTNAC | 3 cut(s) | 391, 1351, 1536 |
| MfeI | CAATTG | 2 cut(s) | 708, 936 |
| MflI | RGATCY | 1 cut(s) | 1715 |
| MhlI | GDGCHC | 3 cut(s) | 1030, 1365, 1428 |
| MlyI | GAGTC | 4 cut(s) | 20, 399, 1973, 2234 |
| MmeI | TCCRAC | 1 cut(s) | 2391 |
| MseI | TTAA | 5 cut(s) | 504, 605, 702, 1017, 1467 |
| MslI | CAYNNNNRTG | 3 cut(s) | 327, 1227, 1832 |
| MspA1I | CMGCKG | 1 cut(s) | 1713 |
| MspR9I | CCNGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| MunI | CAATTG | 2 cut(s) | 708, 936 |
| Mva1269I | GAATGC | 2 cut(s) | 803, 904 |
| MvaI | CCWGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| MvnI | CGCG | 2 cut(s) | 134, 1713 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 685, 694, 1244, 1796, 2296, 2384, 2393 |
| NlaIII | CATG | 8 cut(s) | 246, 838, 965, 1009, 1177, 1226, 1663, 1728 |
| NlaIV | GGNNCC | 4 cut(s) | 576, 1237, 1644, 1876 |
| NmuCI | GTSAC | 2 cut(s) | 391, 1536 |
| NsbI | TGCGCA | 1 cut(s) | 2289 |
| NspI | RCATGY | 1 cut(s) | 246 |
| OliI | CACNNNNGTG | 1 cut(s) | 327 |
| PaeR7I | CTCGAG | 1 cut(s) | 65 |
| PceI | AGGCCT | 1 cut(s) | 440 |
| PciI | ACATGT | 1 cut(s) | 242 |
| PciSI | GCTCTTC | 1 cut(s) | 1407 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 123 |
| PctI | GAATGC | 2 cut(s) | 803, 904 |
| PfeI | GAWTC | 6 cut(s) | 17, 85, 658, 932, 1751, 2158 |
| PfoI | TCCNGGA | 2 cut(s) | 751, 1570 |
| PleI | GAGTC | 4 cut(s) | 20, 398, 1972, 2233 |
| PmaCI | CACGTG | 1 cut(s) | 1033 |
| PmlI | CACGTG | 1 cut(s) | 1033 |
| PpsI | GAGTC | 4 cut(s) | 20, 398, 1972, 2233 |
| Ppu21I | YACGTR | 1 cut(s) | 1033 |
| PpuMI | RGGWCCY | 1 cut(s) | 1643 |
| PscI | ACATGT | 1 cut(s) | 242 |
| Psp5II | RGGWCCY | 1 cut(s) | 1643 |
| Psp6I | CCWGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| PspCI | CACGTG | 1 cut(s) | 1033 |
| PspFI | CCCAGC | 2 cut(s) | 990, 1790 |
| PspGI | CCWGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| PspN4I | GGNNCC | 4 cut(s) | 576, 1237, 1644, 1876 |
| PspPI | GGNCC | 5 cut(s) | 746, 824, 1565, 1643, 1708 |
| PspPPI | RGGWCCY | 1 cut(s) | 1643 |
| PspXI | VCTCGAGB | 1 cut(s) | 65 |
| PsuI | RGATCY | 1 cut(s) | 1715 |
| RsaI | GTAC | 5 cut(s) | 55, 416, 533, 1258, 2045 |
| RsaNI | GTAC | 5 cut(s) | 54, 415, 532, 1257, 2044 |
| RseI | CAYNNNNRTG | 3 cut(s) | 327, 1227, 1832 |
| SacII | CCGCGG | 1 cut(s) | 1714 |
| SalI | GTCGAC | 1 cut(s) | 98 |
| SapI | GCTCTTC | 1 cut(s) | 1407 |
| SaqAI | TTAA | 5 cut(s) | 504, 605, 702, 1017, 1467 |
| Sau96I | GGNCC | 5 cut(s) | 746, 824, 1565, 1643, 1708 |
| ScaI | AGTACT | 2 cut(s) | 55, 533 |
| SchI | GAGTC | 4 cut(s) | 20, 399, 1973, 2234 |
| ScrFI | CCNGG | 4 cut(s) | 753, 1572, 1920, 1928 |
| SduI | GDGCHC | 3 cut(s) | 1030, 1365, 1428 |
| Sfr274I | CTCGAG | 1 cut(s) | 65 |
| Sfr303I | CCGCGG | 1 cut(s) | 1714 |
| SgrBI | CCGCGG | 1 cut(s) | 1714 |
| SinI | GGWCC | 3 cut(s) | 746, 824, 1643 |
| SlaI | CTCGAG | 1 cut(s) | 65 |
| SmiI | ATTTAAAT | 1 cut(s) | 703 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 327, 1227, 1832 |
| SmlI | CTYRAG | 4 cut(s) | 65, 1145, 1457, 1993 |
| SmoI | CTYRAG | 4 cut(s) | 65, 1145, 1457, 1993 |
| SseBI | AGGCCT | 1 cut(s) | 440 |
| SsiI | CCGC | 4 cut(s) | 1711, 1713, 1924, 2269 |
| SspI | AATATT | 2 cut(s) | 1980, 2119 |
| SspMI | CTAG | 1 cut(s) | 1244 |
| StuI | AGGCCT | 1 cut(s) | 440 |
| StyD4I | CCNGG | 4 cut(s) | 751, 1570, 1918, 1926 |
| StyI | CCWWGG | 3 cut(s) | 1378, 1545, 2050 |
| SwaI | ATTTAAAT | 1 cut(s) | 703 |
| TaaI | ACNGT | 7 cut(s) | 446, 536, 1067, 1414, 1489, 1861, 2417 |
| TaiI | ACGT | 1 cut(s) | 1035 |
| TaqI | TCGA | 4 cut(s) | 66, 99, 2228, 2306 |
| TatI | WGTACW | 4 cut(s) | 53, 531, 1256, 2043 |
| TauI | GCSGC | 1 cut(s) | 1926 |
| TfiI | GAWTC | 6 cut(s) | 17, 85, 658, 932, 1751, 2158 |
| Tru1I | TTAA | 5 cut(s) | 504, 605, 702, 1017, 1467 |
| Tru9I | TTAA | 5 cut(s) | 504, 605, 702, 1017, 1467 |
| TscAI | CASTG | 5 cut(s) | 400, 559, 687, 1280, 1639 |
| TseFI | GTSAC | 2 cut(s) | 391, 1536 |
| Tsp45I | GTSAC | 2 cut(s) | 391, 1536 |
| TspGWI | ACGGA | 3 cut(s) | 20, 115, 1145 |
| TspRI | CASTG | 5 cut(s) | 400, 559, 687, 1280, 1639 |
| VpaK11BI | GGWCC | 3 cut(s) | 746, 824, 1643 |
| XapI | RAATTY | 3 cut(s) | 558, 1526, 1695 |
| XceI | RCATGY | 1 cut(s) | 246 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 170, 2057 |
| XhoI | CTCGAG | 1 cut(s) | 65 |
| XmiI | GTMKAC | 1 cut(s) | 99 |
| XspI | CTAG | 1 cut(s) | 1244 |
| ZrmI | AGTACT | 2 cut(s) | 55, 533 |