Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

43714858 .. 43715382

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATGGATTGTCTGCTAAGAAAACTGTCTTTGTTATCGGGGCCACCAATAGACCTGACATTATAGACCCTGCACTTCTGCGTCCAGGACGTCTGGACCAATTGATTTACATCCCTCTCCCTGATGAGGAATCCCGCTGGGAAATATTCAAGGCTTGCTTGAGGAAGTCTCCAGTTTCCAAAGATGTGAACATCAGAGCTCTTGCAAAGAACACTAGAGGATTTAGTGGTGCTGATATCACAGAAATATGCCAGCGTGCTTGCAAATATGCCATTAGAGAGAACATTGGGAATGATATCAAGAGGGAGATGAGCAGAAGTGAGAATCGTGAAGCTATGGAGGAGGATGAAGTGGCAGAGATCACGGCAGCTCACTTCGTGGAGTCGATGAAGTATGCTCGTAGAAGTGTTGGTGATTCCGATATCCGCAAATACAAGGCATACGCTCAGACACTGCAGCAGTCTAGAGGGTTTGGAACAGACCAGTTCAAAATTGCAGGGAGCGGTTCTCATGCTGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

8.76

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	1 - 40	1.3e-07	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	62 - 98	1.6e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	504
AciI	CCGC	3 cut(s)	136, 427, 504
AcyI	GRCGYC	1 cut(s)	91
AdeI	CACNNNGTG	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	151, 490
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	3 cut(s)	200, 335, 371
AluI	AGCT	3 cut(s)	200, 335, 371
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	3 cut(s)	368, 457, 515
AspS9I	GGNCC	2 cut(s)	42, 97
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	380, 469, 502
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	216, 465
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	3 cut(s)	369, 458, 516
BlsI	GCNGC	3 cut(s)	370, 459, 517
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	42, 97
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	87
BplI	GAGNNNNNCTC	4 cut(s)	154, 186, 493, 525
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	173, 484
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	10, 111, 352
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	173, 484
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	380, 469, 502
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	3 cut(s)	136, 427, 504
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	173, 484
BssMI	GATC	1 cut(s)	360
BssNI	GRCGYC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	157, 254, 258, 262
BstDEI	CTNAG	2 cut(s)	18, 447
BstF5I	GGATG	3 cut(s)	10, 111, 352
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	380, 469, 502
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	10, 111, 352
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	4 cut(s)	157, 254, 258, 262
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	42, 97
CseI	GACGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	512
CviJI	RGCY	5 cut(s)	44, 155, 200, 335, 371
CviKI_1	RGCY	5 cut(s)	44, 155, 200, 335, 371
DdeI	CTNAG	2 cut(s)	18, 447
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
DraIII	CACNNNGTG	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	3 cut(s)	238, 298, 424
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	85
EcoRV	GATATC	3 cut(s)	238, 298, 424
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	515
FaiI	YATR	7 cut(s)	65, 250, 270, 338, 396, 442, 513
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	1 cut(s)	511
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	369, 458, 516
FokI	GGATG	3 cut(s)	17, 98, 359
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	369, 458, 516
FspBI	CTAG	2 cut(s)	216, 465
GluI	GCNGC	3 cut(s)	369, 458, 516
GsaI	CCCAGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	44
HgaI	GACGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	515
HinfI	GANTC	4 cut(s)	131, 325, 383, 416
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	197, 421, 450, 524
Hpy188III	TCNNGA	4 cut(s)	95, 301, 329, 465
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	74, 206, 264, 457, 497
HpyF3I	CTNAG	2 cut(s)	18, 447
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	501
Lsp1109I	GCAGC	3 cut(s)	380, 469, 502
MaeI	CTAG	2 cut(s)	216, 465
MaeII	ACGT	1 cut(s)	91
MalI	GATC	1 cut(s)	362
MbiI	CCGCTC	1 cut(s)	504
MboI	GATC	1 cut(s)	360
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	101, 492
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	8 cut(s)	121, 126, 156, 212, 297, 334, 337, 461
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	131, 325, 416
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	370, 459, 517
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	42, 97
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	369, 458, 516
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	42, 97
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	5 cut(s)	58, 94, 202, 337, 373
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	101, 492
SsiI	CCGC	3 cut(s)	136, 427, 504
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	216, 465
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	101, 492
TfiI	GAWTC	3 cut(s)	131, 325, 416
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	3 cut(s)	368, 457, 515
TspDTI	ATGAA	2 cut(s)	363, 404
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	97
XbaI	TCTAGA	1 cut(s)	464
XspI	CTAG	2 cut(s)	216, 465
ZraI	GACGTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.