Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

9075623 .. 9078102

Gene Structure 2480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10223.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATCACCTCAGGGAGCTTATGCAGCAGATGACCACAGAAACAAATGATGAGAGATTGTTTTGCAAATTTTTTCCATCAAGCCTAACTAGCGAGGCAAGAGTGTGGTTCTGCGACCTGAAGCTAGGGTCCATCGCCAACTTCAAACAATTGAGGGAGTCCTTCGTTACGCAATACTTCTGCAACAGAAAGCGTAACAAAGACTTGGTAGCTCTATTCATGGTGAAACAAACAATGGGAGAAAGGCTTAAGACGTTCTATAGGATCGTTTCCGAGCCGAGCAAGCACAAATCTTTACCTGAGTTGAAAGTTGATGAAGATGAACAGTTTGGGAGAGCTCATCTTTCAAAAACACTTCAACTCCTTAAGAGTATCCATATTGAATTCTTCTGTGGCAAAGGAATTGTATTCAGCCATTGTTTTCGCCTAAATGTCAAGTCACATGGGCGCCACTGGGGTAAAGCCGGCCTGGGTGGGGCATCGGTTTATGAATTTACTTTAGAAGGCGGCCAACAAGTCAAGAAGAAGAAATTTGCTCTAGTTCTTGATTTAGATCATACGCTGCTGAATAATAATTTTGTTAGTGAGTTGACATCCGATGAAGAATATTTAGTAAACCAGACTGAGTCCGATCATTCCTTAAAGGATGTTAACCTTGTGGATACTCTTCATCCTAATCGGTTGGTAACAAAGTTAAGACCCTTTGTTCATGCTTTCTTATCTCAAGCCATTGAGTTCTTTGATTTTGCCATTTACACCCTGGGAAATCAGGATTATGCTATGAGAATGGCGAAGCTTCTTGATAAAGGAAATGAACTGATGTTTTGTGGTAGGGTTATTTCATGTGGTGATAACACGATAGACCTTAGGAAGAGTTTAGATATTGTGCTTTGTAAAGACTCGACAGTTGTGATTCTTGATGACAGGAAAGAAATTAGGTTAAATGATTACCAGGATAATATGATTGTTACGCCTCCCTATAACTTTTTCAGATCCAGTAGTCAACAACAAGGCAAATCTTTATCCGAGTTGAAAGTTGATGAAGATGAACAGTTTGGGAGAGCTCATCTTTCAAAAACACTTCACTCCCTAAGAGTATCCACATCGAATTCTTCTGTGGCAAGGGGCAGGATATTATGGAGAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

384

Amino Acids

44.25

Weight (kDa)

8.5

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	179 - 341	1.3e-17	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	3 cut(s)	12, 272, 987
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	5 cut(s)	68, 383, 491, 530, 1108
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflII	CTTAAG	2 cut(s)	248, 365
AgsI	TTSAA	7 cut(s)	145, 307, 348, 359, 383, 1033, 1074
AjnI	CCWGG	3 cut(s)	468, 759, 951
AluBI	AGCT	6 cut(s)	19, 124, 212, 338, 796, 1064
AluI	AGCT	6 cut(s)	19, 124, 212, 338, 796, 1064
Alw21I	GWGCWC	2 cut(s)	340, 1066
AlwI	GGATC	3 cut(s)	12, 272, 987
AoxI	GGCC	2 cut(s)	466, 508
ApeKI	GCWGC	2 cut(s)	25, 562
ApoI	RAATTY	5 cut(s)	68, 383, 491, 530, 1108
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	235, 860
AvaII	GGWCC	1 cut(s)	129
AxyI	CCTNAGG	2 cut(s)	11, 866
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	2 cut(s)	340, 1066
Bbv12I	GWGCWC	2 cut(s)	340, 1066
BbvI	GCAGC	2 cut(s)	37, 549
BccI	CCATC	2 cut(s)	85, 140
BciT130I	CCWGG	3 cut(s)	470, 761, 953
BciVI	GTATCC	3 cut(s)	383, 655, 1108
BfaI	CTAG	3 cut(s)	90, 125, 539
BfmI	CTRYAG	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	451
BfrI	CTTAAG	2 cut(s)	248, 365
BfuI	GTATCC	3 cut(s)	383, 655, 1108
BisI	GCNGC	3 cut(s)	26, 508, 563
BlsI	GCNGC	3 cut(s)	27, 509, 564
Bme1390I	CCNGG	3 cut(s)	470, 761, 953
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	130, 449
BmrFI	CCNGG	3 cut(s)	470, 761, 953
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	469, 759, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	458, 996
Bse21I	CCTNAGG	2 cut(s)	11, 866
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	3 cut(s)	470, 761, 953
BseDI	CCNNGG	3 cut(s)	469, 759, 760
BseGI	GGATG	3 cut(s)	593, 652, 670
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	3 cut(s)	25, 291, 615
BseNI	ACTGG	2 cut(s)	458, 996
BseXI	GCAGC	2 cut(s)	37, 549
BshFI	GGCC	2 cut(s)	468, 510
BshNI	GGYRCC	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	340, 1066
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	475
BsnI	GGCC	2 cut(s)	468, 510
Bsp1286I	GDGCHC	2 cut(s)	340, 1066
Bsp143I	GATC	5 cut(s)	4, 264, 553, 631, 992
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	468, 510
BspCNI	CTCAG	3 cut(s)	24, 292, 616
BspLI	GGNNCC	2 cut(s)	130, 449
BspPI	GGATC	3 cut(s)	12, 272, 987
BspT107I	GGYRCC	1 cut(s)	447
BspTI	CTTAAG	2 cut(s)	248, 365
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	458, 996
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	469, 759, 760
BssMI	GATC	5 cut(s)	4, 264, 553, 631, 992
BssNI	GRCGYC	1 cut(s)	448
Bst2UI	CCWGG	3 cut(s)	470, 761, 953
Bst4CI	ACNGT	3 cut(s)	327, 907, 1053
Bst6I	CTCTTC	2 cut(s)	672, 866
BstACI	GRCGYC	1 cut(s)	448
BstAFI	CTTAAG	2 cut(s)	248, 365
BstC8I	GCNNGC	2 cut(s)	284, 466
BstDEI	CTNAG	5 cut(s)	11, 300, 624, 866, 1091
BstF5I	GGATG	3 cut(s)	593, 652, 670
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	5 cut(s)	7, 267, 556, 634, 995
BstMBI	GATC	5 cut(s)	4, 264, 553, 631, 992
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 90, 283
BstNI	CCWGG	3 cut(s)	470, 761, 953
BstSCI	CCNGG	3 cut(s)	468, 759, 951
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	37, 549
BstX2I	RGATCY	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	992
Bsu36I	CCTNAGG	2 cut(s)	11, 866
BsuI	GTATCC	3 cut(s)	383, 655, 1108
BsuRI	GGCC	2 cut(s)	468, 510
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	593, 652, 670
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	284, 466
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	4 cut(s)	220, 443, 710, 843
DdeI	CTNAG	5 cut(s)	11, 300, 624, 866, 1091
DinI	GGCGCC	1 cut(s)	449
DpnI	GATC	5 cut(s)	6, 266, 555, 633, 994
DpnII	GATC	5 cut(s)	4, 264, 553, 631, 992
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	672, 866
EarI	CTCTTC	2 cut(s)	672, 866
Ecl136II	GAGCTC	2 cut(s)	338, 1064
Eco24I	GRGCYC	2 cut(s)	340, 1066
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	2 cut(s)	338, 1064
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	2 cut(s)	11, 866
EcoICRI	GAGCTC	2 cut(s)	338, 1064
EcoRI	GAATTC	2 cut(s)	383, 1108
EcoRII	CCWGG	3 cut(s)	468, 759, 951
EcoT38I	GRGCYC	2 cut(s)	340, 1066
EgeI	GGCGCC	1 cut(s)	449
EheI	GGCGCC	1 cut(s)	449
FaeI	CATG	4 cut(s)	223, 446, 713, 846
FatI	CATG	4 cut(s)	219, 442, 709, 842
Fnu4HI	GCNGC	3 cut(s)	26, 508, 563
FokI	GGATG	3 cut(s)	580, 657, 659
FriOI	GRGCYC	2 cut(s)	340, 1066
Fsp4HI	GCNGC	3 cut(s)	26, 508, 563
FspBI	CTAG	3 cut(s)	90, 125, 539
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	3 cut(s)	26, 508, 563
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	468, 510
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	223, 446, 713, 846
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	3 cut(s)	591, 652, 1004
HindII	GTYRAC	3 cut(s)	591, 652, 1004
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	158, 626, 899, 913
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	235, 860
Hpy166II	GTNNAC	4 cut(s)	591, 616, 652, 1004
Hpy188I	TCNGA	5 cut(s)	274, 598, 631, 992, 1027
Hpy188III	TCNNGA	5 cut(s)	520, 545, 770, 800, 917
Hpy8I	GTNNAC	4 cut(s)	591, 616, 652, 1004
HpyAV	CCTTC	2 cut(s)	172, 497
HpyCH4III	ACNGT	3 cut(s)	327, 907, 1053
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	25, 66, 183
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 90, 283
HpyF3I	CTNAG	5 cut(s)	11, 300, 624, 866, 1091
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	223, 446, 713, 846
HspAI	GCGC	1 cut(s)	448
KasI	GGCGCC	1 cut(s)	447
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	5 cut(s)	4, 264, 553, 631, 992
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	37, 549
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	90, 125, 539
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	5 cut(s)	166, 194, 438, 685, 967
MalI	GATC	5 cut(s)	6, 266, 555, 633, 994
MboI	GATC	5 cut(s)	4, 264, 553, 631, 992
MboII	GAAGA	9 cut(s)	329, 379, 535, 538, 614, 659, 883, 1055, 1104
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	992
MhlI	GDGCHC	2 cut(s)	340, 1066
MluCI	AATT	9 cut(s)	68, 149, 383, 402, 491, 530, 574, 933, 1108
Mly113I	GGCGCC	1 cut(s)	448
MlyI	GAGTC	3 cut(s)	167, 635, 893
MnlI	CCTC	4 cut(s)	20, 88, 147, 984
MroNI	GCCGGC	1 cut(s)	464
MseI	TTAA	6 cut(s)	249, 366, 641, 651, 695, 941
MspCI	CTTAAG	2 cut(s)	248, 365
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	470, 761, 953
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	470, 761, 953
MwoI	GCNNNNNNNGC	3 cut(s)	25, 90, 283
NaeI	GCCGGC	1 cut(s)	466
NarI	GGCGCC	1 cut(s)	448
NdeII	GATC	5 cut(s)	4, 264, 553, 631, 992
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	4 cut(s)	223, 446, 713, 846
NlaIV	GGNNCC	2 cut(s)	130, 449
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	438
PasI	CCCWGGG	1 cut(s)	760
PdiI	GCCGGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	913
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	3 cut(s)	27, 509, 564
PleI	GAGTC	3 cut(s)	166, 634, 893
PluTI	GGCGCC	1 cut(s)	451
PpsI	GAGTC	3 cut(s)	166, 634, 893
Psp124BI	GAGCTC	2 cut(s)	340, 1066
Psp6I	CCWGG	3 cut(s)	468, 759, 951
PspGI	CCWGG	3 cut(s)	468, 759, 951
PspN4I	GGNNCC	2 cut(s)	130, 449
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	992
PsyI	GACNNNGTC	1 cut(s)	625
SacI	GAGCTC	2 cut(s)	340, 1066
SaqAI	TTAA	6 cut(s)	249, 366, 641, 651, 695, 941
SatI	GCNGC	3 cut(s)	26, 508, 563
Sau3AI	GATC	5 cut(s)	4, 264, 553, 631, 992
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	3 cut(s)	167, 635, 893
ScrFI	CCNGG	3 cut(s)	470, 761, 953
SduI	GDGCHC	2 cut(s)	340, 1066
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	259
SfoI	GGCGCC	1 cut(s)	449
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	3 cut(s)	248, 365, 723
SmoI	CTYRAG	3 cut(s)	248, 365, 723
Sse9I	AATT	9 cut(s)	68, 149, 383, 402, 491, 530, 574, 933, 1108
SsiI	CCGC	1 cut(s)	507
SspDI	GGCGCC	1 cut(s)	447
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	3 cut(s)	90, 125, 539
SstI	GAGCTC	2 cut(s)	340, 1066
StyD4I	CCNGG	3 cut(s)	468, 759, 951
TaaI	ACNGT	3 cut(s)	327, 907, 1053
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	902, 1106
TasI	AATT	9 cut(s)	68, 149, 383, 402, 491, 530, 574, 933, 1108
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	913
Tru1I	TTAA	6 cut(s)	249, 366, 641, 651, 695, 941
Tru9I	TTAA	6 cut(s)	249, 366, 641, 651, 695, 941
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	2 cut(s)	25, 562
Tsp45I	GTSAC	1 cut(s)	438
TspRI	CASTG	1 cut(s)	458
Tth111I	GACNNNGTC	1 cut(s)	625
Vha464I	CTTAAG	2 cut(s)	248, 365
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	5 cut(s)	68, 383, 491, 530, 1108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XspI	CTAG	3 cut(s)	90, 125, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.