Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

27193953 .. 27194631

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACGTTGGTGAAGGCACAAGTCGTCCAAAGAGGGTGCGCGAGGAATATCCTTAATGTGCTCAAACCTCGAGGGTTCACCATGCTTATGTTCCAAAAATATGACGGAACCACTGACCCCGTCGACCACATCAAAGCATACAAACAACAACTGTCCTTTGAAACAACCAACAAAAAGTTGATGTGCAAGCTCTTCCCCTCGAGTGTGATCGGGCCCGCGTTCACTTGGTTTCAGGATATGAAGCCCCATTCGATTCCAGATTTTGACACGCTAAGCCGAGCCTTTATATCTCAATACTTCTATAGTCGTAAGAAGAAAAAAGATATTGAAACTTGTTCAGCACTAAGCAAACATTGGGATAAATTATTGGACACTTCTTTGAGCGGTTCAAGGGGTAAATGCGGCACTTCTTCGAACCCGAGATTGAAACCCGGTCCAACTTCCATTCTAGGTCGACCCATTCGCCACAGATCTGATCCTCGATCCCGAACCATTGTCGACAACTCGGAAAACCTCTCCAACTACCAACCCGGCCAAGAAGATCTGATCTTCCACTTGCTAGTCGCCATGAACTCCCTAATCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

196

Amino Acids

22.17

Weight (kDa)

9.8

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	3 cut(s)	123, 454, 498
AccII	CGCG	2 cut(s)	41, 218
AciI	CCGC	3 cut(s)	216, 384, 402
AclWI	GGATC	2 cut(s)	470, 477
AcoI	YGGCCR	1 cut(s)	532
AgsI	TTSAA	4 cut(s)	161, 329, 390, 427
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	470, 477
Ama87I	CYCGRG	3 cut(s)	69, 199, 418
AoxI	GGCC	2 cut(s)	212, 532
ApaI	GGGCCC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	212, 213, 434
AsuC2I	CCSGG	2 cut(s)	432, 531
AsuHPI	GGTGA	2 cut(s)	22, 70
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	3 cut(s)	69, 199, 418
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	432, 531
BfaI	CTAG	3 cut(s)	449, 560, 586
BfmI	CTRYAG	1 cut(s)	301
BglII	AGATCT	2 cut(s)	470, 541
BisI	GCNGC	1 cut(s)	403
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	432, 531
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	3 cut(s)	69, 199, 418
BmgT120I	GGNCC	3 cut(s)	212, 213, 434
BmiI	GGNNCC	2 cut(s)	109, 214
BmrFI	CCNGG	2 cut(s)	432, 531
Bpu1102I	GCTNAGC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	432, 531
BseSI	GKGCMC	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	41, 218
BshFI	GGCC	2 cut(s)	214, 534
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	3 cut(s)	69, 199, 418
BsiSI	CCGG	2 cut(s)	432, 531
BsnI	GGCC	2 cut(s)	214, 534
BsoBI	CYCGRG	3 cut(s)	69, 199, 418
Bsp119I	TTCGAA	1 cut(s)	413
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	63, 216
Bsp143I	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	3 cut(s)	216, 384, 402
BspANI	GGCC	2 cut(s)	214, 534
BspFNI	CGCG	2 cut(s)	41, 218
BspLI	GGNNCC	2 cut(s)	109, 214
BspPI	GGATC	2 cut(s)	470, 477
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	384
BssMI	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	188, 216
BstDEI	CTNAG	2 cut(s)	272, 344
BstFNI	CGCG	2 cut(s)	41, 218
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	6 cut(s)	210, 473, 478, 485, 544, 549
BstMBI	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
BstSCI	CCNGG	2 cut(s)	430, 529
BstSFI	CTRYAG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	2 cut(s)	41, 218
BstX2I	RGATCY	2 cut(s)	470, 541
BstYI	RGATCY	2 cut(s)	470, 541
BsuRI	GGCC	2 cut(s)	214, 534
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	188, 216
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	212, 213, 434
CviAII	CATG	2 cut(s)	82, 568
CviJI	RGCY	6 cut(s)	190, 214, 244, 276, 281, 534
CviKI_1	RGCY	6 cut(s)	190, 214, 244, 276, 281, 534
DdeI	CTNAG	2 cut(s)	272, 344
DpnI	GATC	6 cut(s)	209, 472, 477, 484, 543, 548
DpnII	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	434
Eco88I	CYCGRG	3 cut(s)	69, 199, 418
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	2 cut(s)	85, 571
FaiI	YATR	8 cut(s)	83, 89, 102, 139, 239, 287, 303, 569
FatI	CATG	2 cut(s)	81, 567
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	3 cut(s)	123, 454, 498
Fnu4HI	GCNGC	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	3 cut(s)	449, 560, 586
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	214, 534
HapII	CCGG	2 cut(s)	432, 531
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	85, 571
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	3 cut(s)	124, 455, 499
HindII	GTYRAC	3 cut(s)	124, 455, 499
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	432, 531
HphI	GGTGA	2 cut(s)	22, 70
Hpy166II	GTNNAC	5 cut(s)	78, 124, 222, 455, 499
Hpy188I	TCNGA	3 cut(s)	475, 508, 546
Hpy188III	TCNNGA	3 cut(s)	233, 257, 486
Hpy8I	GTNNAC	5 cut(s)	78, 124, 222, 455, 499
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	272, 344
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	85, 571
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	218, 270, 445, 544
MaeI	CTAG	3 cut(s)	449, 560, 586
MaeII	ACGT	1 cut(s)	5
MalI	GATC	6 cut(s)	209, 472, 477, 484, 543, 548
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
MboII	GAAGA	5 cut(s)	184, 325, 402, 541, 551
MflI	RGATCY	2 cut(s)	470, 541
MhlI	GDGCHC	2 cut(s)	63, 216
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	461, 543
MnlI	CCTC	7 cut(s)	26, 36, 65, 78, 208, 489, 524
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	2 cut(s)	432, 531
MspR9I	CCNGG	2 cut(s)	432, 531
MvnI	CGCG	2 cut(s)	41, 218
NciI	CCSGG	2 cut(s)	432, 531
NdeII	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
NlaIII	CATG	2 cut(s)	85, 571
NlaIV	GGNNCC	2 cut(s)	109, 214
NmeAIII	GCCGAG	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	2 cut(s)	69, 199
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	109, 214
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	3 cut(s)	212, 213, 434
PspXI	VCTCGAGB	2 cut(s)	69, 199
PsuI	RGATCY	2 cut(s)	470, 541
PsyI	GACNNNGTC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	86
SalI	GTCGAC	3 cut(s)	122, 453, 497
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	6 cut(s)	207, 470, 475, 482, 541, 546
Sau96I	GGNCC	3 cut(s)	212, 213, 434
ScrFI	CCNGG	2 cut(s)	432, 531
SduI	GDGCHC	2 cut(s)	63, 216
SetI	ASST	5 cut(s)	8, 70, 192, 454, 516
SfcI	CTRYAG	1 cut(s)	301
Sfr274I	CTCGAG	2 cut(s)	69, 199
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	434
SlaI	CTCGAG	2 cut(s)	69, 199
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	69, 199
SmoI	CTYRAG	2 cut(s)	69, 199
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	3 cut(s)	216, 384, 402
SspMI	CTAG	3 cut(s)	449, 560, 586
StyD4I	CCNGG	2 cut(s)	430, 529
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	8 cut(s)	70, 123, 200, 251, 413, 454, 481, 498
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	254, 584
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	434
XhoI	CTCGAG	2 cut(s)	69, 199
XmiI	GTMKAC	3 cut(s)	123, 454, 498
XspI	CTAG	3 cut(s)	449, 560, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.