Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005840.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

71289 .. 72152

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005840.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggcgggagctgtgcctgatggaatcccctttctgtcactaaggactgggagcgatgaagtccgaccctttgaccagcccttgaatgagcctttcctaaacttggtcggcgatctaaacttgcctccagttggtgaagcacaaacgctgagacaagaacttgagcaactccagagggaaaaacagtaccgagaaactcgtcgacggagaaggctcaaaaggctcctccagctcagcagcgactctttggatgaagagatcagcgatgcccaccacaaccacagggtaaccaacacaatagctggtggcgcaggtaaaaccttggttgagagattgagcggcacgctgaacgataatggtagaatcggggcaggacgccacaagcgaccacgcaatgaagaatggagagagaaaatggagaagatgatcgaacagtgcaagcgcactggccctcgagaactagcggccaaattcgcaagagacgtcggtgcgtctccattcaccaatgacatcctcaatgcggcgaaacctcacagattcaccacccccgttttccaaaagtatgatgggactactgacccggtagaaacagcagatgtccatcgagacaaccgacgagaaactgatgtgcaaacttttccctttaagcctcacagggaccgcgtcaacatggttccaagacctcaagccccaatcaatcccagatttcgaaacgttgagccaaactttcatctctcaatatttatgcagtcgcaagcaaaaaaaggacatagcgaccttattcaacaccaagcaaaaagtaggagagaagatcgattgtttcttcaagagattcaaggcagagatgatgcacatcaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

33.05

Weight (kDa)

9.66

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	202
AccII	CGCG	1 cut(s)	663
AciI	CCGC	5 cut(s)	5, 339, 464, 521, 661
AclI	AACGTT	1 cut(s)	714
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	376, 483
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	103, 131, 520
AgsI	TTSAA	4 cut(s)	85, 785, 827, 836
AluBI	AGCT	3 cut(s)	11, 232, 302
AluI	AGCT	3 cut(s)	11, 232, 302
Alw26I	GTCTC	4 cut(s)	145, 474, 498, 600
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	448, 465
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	311, 444
AspS9I	GGNCC	2 cut(s)	449, 658
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	3 cut(s)	146, 493, 532
AsuII	TTCGAA	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	14, 560, 609
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	4 cut(s)	145, 474, 498, 600
BfaI	CTAG	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	238, 340, 465, 522
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	4 cut(s)	239, 341, 466, 523
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	449, 658
BmiI	GGNNCC	3 cut(s)	224, 659, 675
BmrFI	CCNGG	1 cut(s)	581
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	256, 838
BmuI	ACTGGG	1 cut(s)	57
BpmI	CTGGAG	3 cut(s)	111, 155, 212
Bpu1102I	GCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	709
BpuEI	CTTGAG	2 cut(s)	182, 669
BpuMI	CCSGG	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	814
BsaBI	GATNNNNATC	2 cut(s)	600, 852
BsaHI	GRCGYC	2 cut(s)	376, 483
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 131, 520
Bse1I	ACTGG	3 cut(s)	52, 128, 451
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	2 cut(s)	600, 852
BseCI	ATCGAT	1 cut(s)	814
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	256, 510
BseJI	GATNNNNATC	2 cut(s)	600, 852
BseLI	CCNNNNNNNGG	3 cut(s)	103, 131, 520
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	140, 247
BseNI	ACTGG	3 cut(s)	52, 128, 451
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	2 cut(s)	450, 467
BshVI	ATCGAT	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	2 cut(s)	583, 671
BslI	CCNNNNNNNGG	3 cut(s)	103, 131, 520
BsmAI	GTCTC	4 cut(s)	145, 474, 498, 600
BsmBI	CGTCTC	2 cut(s)	474, 498
BsmFI	GGGAC	2 cut(s)	583, 671
BsnI	GGCC	2 cut(s)	450, 467
BsoBI	CYCGRG	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	709
Bsp143I	GATC	4 cut(s)	112, 258, 426, 811
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	5 cut(s)	5, 339, 464, 521, 661
BspANI	GGCC	2 cut(s)	450, 467
BspCNI	CTCAG	2 cut(s)	141, 246
BspDI	ATCGAT	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	224, 659, 675
BspMI	ACCTGC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	52, 128, 451
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	112, 258, 426, 811
BssNI	GRCGYC	2 cut(s)	376, 483
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	186, 435
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	376, 483
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	344, 440, 756
BstDEI	CTNAG	3 cut(s)	41, 149, 233
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	256, 510
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	2 cut(s)	311, 444
BstKTI	GATC	4 cut(s)	115, 261, 429, 814
BstMAI	GTCTC	4 cut(s)	145, 474, 498, 600
BstMBI	GATC	4 cut(s)	112, 258, 426, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	450, 467
BsuTUI	ATCGAT	1 cut(s)	814
BtgZI	GCGATG	2 cut(s)	69, 279
BtsCI	GGATG	2 cut(s)	256, 510
BtsIMutI	CAGTG	2 cut(s)	440, 444
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	3 cut(s)	344, 440, 756
CfoI	GCGC	2 cut(s)	311, 444
Cfr13I	GGNCC	2 cut(s)	449, 658
ClaI	ATCGAT	1 cut(s)	814
CseI	GACGC	3 cut(s)	384, 480, 652
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	670
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	41, 149, 233
DpnI	GATC	4 cut(s)	114, 260, 428, 813
DpnII	GATC	4 cut(s)	112, 258, 426, 811
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	658
Eco88I	CYCGRG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	2 cut(s)	474, 498
FaeI	CATG	1 cut(s)	673
FaiI	YATR	4 cut(s)	564, 671, 746, 771
FaqI	GGGAC	2 cut(s)	583, 671
FatI	CATG	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	238, 340, 465, 522
FokI	GGATG	2 cut(s)	263, 497
Fsp4HI	GCNGC	4 cut(s)	238, 340, 465, 522
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	2 cut(s)	310, 443
GluI	GCNGC	4 cut(s)	238, 340, 465, 522
GsuI	CTGGAG	3 cut(s)	111, 155, 212
HaeIII	GGCC	2 cut(s)	450, 467
HapII	CCGG	1 cut(s)	581
HgaI	GACGC	3 cut(s)	384, 480, 652
HhaI	GCGC	2 cut(s)	311, 444
Hin1I	GRCGYC	2 cut(s)	376, 483
Hin1II	CATG	1 cut(s)	673
Hin6I	GCGC	2 cut(s)	309, 442
HinP1I	GCGC	2 cut(s)	309, 442
HincII	GTYRAC	2 cut(s)	203, 667
HindII	GTYRAC	2 cut(s)	203, 667
HinfI	GANTC	5 cut(s)	24, 242, 363, 537, 832
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	3 cut(s)	146, 493, 532
Hpy166II	GTNNAC	2 cut(s)	203, 667
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	4 cut(s)	172, 455, 605, 827
Hpy8I	GTNNAC	2 cut(s)	203, 667
Hpy99I	CGWCG	4 cut(s)	204, 207, 488, 618
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	186, 435
HpyCH4IV	ACGT	2 cut(s)	483, 714
HpyCH4V	TGCA	4 cut(s)	438, 631, 748, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
HpyF3I	CTNAG	3 cut(s)	41, 149, 233
HpySE526I	ACGT	2 cut(s)	483, 714
Hsp92I	GRCGYC	2 cut(s)	376, 483
Hsp92II	CATG	1 cut(s)	673
HspAI	GCGC	2 cut(s)	309, 442
Kzo9I	GATC	4 cut(s)	112, 258, 426, 811
LmnI	GCTCC	3 cut(s)	8, 51, 228
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	256, 838
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	483, 714
MaeIII	GTNAC	2 cut(s)	36, 286
MalI	GATC	4 cut(s)	114, 260, 428, 813
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	112, 258, 426, 811
MboII	GAAGA	5 cut(s)	266, 410, 433, 815, 821
MfeI	CAATTG	1 cut(s)	857
MluCI	AATT	2 cut(s)	470, 857
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	135, 168, 236, 462, 524, 540, 660, 693
MseI	TTAA	1 cut(s)	645
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	857
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
NciI	CCSGG	1 cut(s)	581
NdeII	GATC	4 cut(s)	112, 258, 426, 811
NlaIII	CATG	1 cut(s)	673
NlaIV	GGNNCC	3 cut(s)	224, 659, 675
NmuCI	GTSAC	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	709
PaeR7I	CTCGAG	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	3 cut(s)	382, 480, 610
PfeI	GAWTC	4 cut(s)	24, 363, 537, 832
PflFI	GACNNNGTC	1 cut(s)	662
PkrI	GCNGC	4 cut(s)	239, 341, 466, 523
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	714
PspEI	GGTNACC	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	224, 659, 675
PspPI	GGNCC	2 cut(s)	449, 658
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	238, 340, 465, 522
Sau3AI	GATC	4 cut(s)	112, 258, 426, 811
Sau96I	GGNCC	2 cut(s)	449, 658
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	581
SfaNI	GCATC	2 cut(s)	256, 838
Sfr274I	CTCGAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	709
SgrDI	CGTCGACG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	658
SlaI	CTCGAG	1 cut(s)	453
SmlI	CTYRAG	3 cut(s)	161, 453, 684
SmoI	CTYRAG	3 cut(s)	161, 453, 684
Sse9I	AATT	2 cut(s)	470, 857
SsiI	CCGC	5 cut(s)	5, 339, 464, 521, 661
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	186, 435
TaiI	ACGT	2 cut(s)	486, 717
TaqI	TCGA	6 cut(s)	202, 429, 454, 604, 709, 814
TasI	AATT	2 cut(s)	470, 857
TauI	GCSGC	3 cut(s)	342, 467, 524
TfiI	GAWTC	4 cut(s)	24, 363, 537, 832
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	440, 451
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	72, 267, 411, 719
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	440, 451
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	1 cut(s)	461
ZraI	GACGTC	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.