Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

54942512 .. 54944919

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAAGTGGAGTATGGAAGGGTTTGTAAAATATGGAAAAGATGGAGTAATGATGAAATGAAAACAAAGCATGAAGGCATCGGAGGGTTTTCTGCGGTACCCCCTCCTCCTCGAGCCGACGGTCAAACTCCGTGTCAACGCTCGAGGGAAGCTTCTCGATTGTTCCCGGTCGGCTCCGCTCCGGTCCACATTAATTGTTGGGTCAAACTCCTCAACGGAATTTTTCACCTCCAACAAGTGGCGCCGTACGTGGGAAACATTTTTCCCTTAAAAGTGATGGCGGGAGCTGCCCCCGACGAGATTCCATTTATGTCACTAAGGATCGGTAGTGACGAAATTCCGCCCCACCGACCACCTAGTGGGTCCATCCCGAGCCCCATCGGCGACACGAACTTGCCTCCGGCGGATGAGACGCAAAGGATGAGCGGGGAACTCAAGCAATTTCGGAGGGAAAAGCGGGACCGCAAGGCTCGTCTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

9.89

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	97
AccB1I	GGYRCC	2 cut(s)	97, 241
AccB7I	CCANNNNNTGG	2 cut(s)	238, 359
AccBSI	CCGCTC	2 cut(s)	179, 426
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	8 cut(s)	95, 177, 281, 341, 404, 426, 457, 463
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	219, 336
AcyI	GRCGYC	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	99, 248
AfiI	CCNNNNNNNGG	3 cut(s)	238, 251, 359
AluBI	AGCT	2 cut(s)	152, 287
AluI	AGCT	2 cut(s)	152, 287
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	3 cut(s)	111, 142, 370
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	219, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AseI	ATTAAT	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	184, 363, 460
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	3 cut(s)	111, 142, 370
AvaII	GGWCC	3 cut(s)	184, 363, 460
BanI	GGYRCC	2 cut(s)	97, 241
BanII	GRGCYC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	4 cut(s)	36, 271, 374, 386
BceAI	ACGGC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	381
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	184, 363, 460
BmeT110I	CYCGRG	3 cut(s)	111, 142, 370
BmgT120I	GGNCC	3 cut(s)	184, 363, 460
BmiI	GGNNCC	5 cut(s)	99, 175, 243, 364, 461
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 251, 359
BseGI	GGATG	3 cut(s)	366, 412, 426
BseLI	CCNNNNNNNGG	3 cut(s)	238, 251, 359
BseRI	GAGGAG	3 cut(s)	96, 99, 200
BseXI	GCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	171
BshNI	GGYRCC	2 cut(s)	97, 241
BsiEI	CGRYCG	1 cut(s)	171
BsiHKCI	CYCGRG	3 cut(s)	111, 142, 370
BsiSI	CCGG	3 cut(s)	167, 182, 401
BsiWI	CGTACG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	238, 251, 359
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	473
BsoBI	CYCGRG	3 cut(s)	111, 142, 370
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	8 cut(s)	95, 177, 281, 341, 404, 426, 457, 463
BspLI	GGNNCC	5 cut(s)	99, 175, 243, 364, 461
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	2 cut(s)	97, 241
BsrBI	CCGCTC	2 cut(s)	179, 426
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	366, 412, 426
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 381
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	366, 412, 426
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	184, 363, 460
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	98, 247
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	116, 152, 174, 287, 375, 470
CviKI_1	RGCY	6 cut(s)	116, 152, 174, 287, 375, 470
CviQI	GTAC	2 cut(s)	98, 247
DdeI	CTNAG	1 cut(s)	317
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DraIII	CACNNNGTG	1 cut(s)	359
EciI	GGCGGA	2 cut(s)	330, 419
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	184, 363, 460
Eco88I	CYCGRG	3 cut(s)	111, 142, 370
EcoT38I	GRGCYC	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	1 cut(s)	74
FaiI	YATR	4 cut(s)	15, 34, 72, 311
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	1 cut(s)	70
FauI	CCCGC	3 cut(s)	274, 419, 450
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	353, 419, 433
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	3 cut(s)	167, 182, 401
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	3 cut(s)	167, 182, 401
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	137, 187, 476
Hpy188I	TCNGA	2 cut(s)	83, 447
Hpy188III	TCNNGA	2 cut(s)	156, 370
Hpy8I	GTNNAC	3 cut(s)	137, 187, 476
Hpy99I	CGWCG	2 cut(s)	122, 299
HpyAV	CCTTC	2 cut(s)	12, 68
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 381
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	179, 184, 284
LpnPI	CCDG	3 cut(s)	180, 195, 414
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	312, 329
MalI	GATC	1 cut(s)	323
MbiI	CCGCTC	2 cut(s)	179, 426
MboI	GATC	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	4 cut(s)	193, 219, 336, 440
Mly113I	GGCGCC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	9 cut(s)	77, 114, 117, 120, 138, 221, 239, 408, 441
MseI	TTAA	2 cut(s)	192, 269
MspI	CCGG	3 cut(s)	167, 182, 401
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	287, 381
NarI	GGCGCC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	5 cut(s)	99, 175, 243, 364, 461
NmuCI	GTSAC	2 cut(s)	312, 329
PaeR7I	CTCGAG	2 cut(s)	111, 142
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	301
Pfl23II	CGTACG	1 cut(s)	246
PflMI	CCANNNNNTGG	2 cut(s)	238, 359
PkrI	GCNGC	1 cut(s)	289
PluTI	GGCGCC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	192
PspLI	CGTACG	1 cut(s)	246
PspN4I	GGNNCC	5 cut(s)	99, 175, 243, 364, 461
PspPI	GGNCC	3 cut(s)	184, 363, 460
PspXI	VCTCGAGB	2 cut(s)	111, 142
RsaI	GTAC	2 cut(s)	99, 248
RsaNI	GTAC	2 cut(s)	98, 247
SaqAI	TTAA	2 cut(s)	192, 269
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	3 cut(s)	184, 363, 460
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	5 cut(s)	154, 231, 252, 289, 358
SfaNI	GCATC	1 cut(s)	87
SfoI	GGCGCC	1 cut(s)	243
Sfr274I	CTCGAG	2 cut(s)	111, 142
SinI	GGWCC	3 cut(s)	184, 363, 460
SlaI	CTCGAG	2 cut(s)	111, 142
SmlI	CTYRAG	3 cut(s)	111, 142, 434
SmoI	CTYRAG	3 cut(s)	111, 142, 434
Sse9I	AATT	4 cut(s)	193, 219, 336, 440
SsiI	CCGC	8 cut(s)	95, 177, 281, 341, 404, 426, 457, 463
SspDI	GGCGCC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	112, 143, 157
TasI	AATT	4 cut(s)	193, 219, 336, 440
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	192, 269
Tru9I	TTAA	2 cut(s)	192, 269
TseFI	GTSAC	2 cut(s)	312, 329
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	2 cut(s)	312, 329
TspDTI	ATGAA	4 cut(s)	17, 69, 74, 87
TspGWI	ACGGA	2 cut(s)	120, 231
Van91I	CCANNNNNTGG	2 cut(s)	238, 359
VpaK11BI	GGWCC	3 cut(s)	184, 363, 460
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	2 cut(s)	219, 336
XhoI	CTCGAG	2 cut(s)	111, 142
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.