Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001744.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

97773 .. 98096

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001744.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggcgggagctgcccctgacgggattccatttctgtcactgaggactggtagtgacgaacttcctccccaccagccaccgaacgggtccatcccgagccccatcggcgacctgaacttgcctccagctgacgagacgcagaggctaaggcaggaactcgagcaatttcggaaggaaaaacgggaccgcgaggctggtcgtcgacaaaaacttgaaagtttcttacaacttgacagtgattcgtcagacgacgacaccataggcgatctccaccaaactaacaacgtggtagccaacgcaggcgccagcgacgttattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

4.55

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	202
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	5, 187
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	21, 83
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	11, 128
AluI	AGCT	2 cut(s)	11, 128
Alw26I	GTCTC	1 cut(s)	128
Ama87I	CYCGRG	2 cut(s)	94, 158
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	87, 184
AvaI	CYCGRG	2 cut(s)	94, 158
AvaII	GGWCC	2 cut(s)	87, 184
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	101
BccI	CCATC	2 cut(s)	98, 110
BcoDI	GTCTC	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	87, 184
BmeT110I	CYCGRG	2 cut(s)	94, 158
BmgT120I	GGNCC	2 cut(s)	87, 184
BmiI	GGNNCC	3 cut(s)	88, 185, 304
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 83
Bse1I	ACTGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	21, 83
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	94, 158
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	21, 83
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	94, 158
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	5, 187
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	88, 185, 304
BspT107I	GGYRCC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	301, 307
BstDEI	CTNAG	2 cut(s)	41, 146
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 105
BstUI	CGCG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	38, 241
Cac8I	GCNNGC	2 cut(s)	301, 307
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	87, 184
CseI	GACGC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	11, 76, 99, 128, 145, 194, 293
CviKI_1	RGCY	7 cut(s)	11, 76, 99, 128, 145, 194, 293
DdeI	CTNAG	2 cut(s)	41, 146
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	87, 184
Eco88I	CYCGRG	2 cut(s)	94, 158
EcoT38I	GRGCYC	1 cut(s)	101
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	128
FaiI	YATR	1 cut(s)	260
FaqI	GGGAC	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	306
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	25, 239
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	171, 247
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	3 cut(s)	204, 254, 314
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	285, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 105
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	2 cut(s)	285, 312
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	1 cut(s)	303
KasI	GGCGCC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	9 cut(s)	30, 33, 86, 125, 137, 138, 180, 285, 319
MaeII	ACGT	2 cut(s)	285, 312
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	164
Mly113I	GGCGCC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	36, 75, 132, 135, 184
MspA1I	CMGCKG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	11, 105
NarI	GGCGCC	1 cut(s)	303
NdeII	GATC	1 cut(s)	265
NlaIV	GGNNCC	3 cut(s)	88, 185, 304
NmuCI	GTSAC	2 cut(s)	36, 53
PaeR7I	CTCGAG	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	25, 239
PkrI	GCNGC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	88, 185, 304
PspPI	GGNCC	2 cut(s)	87, 184
PspXI	VCTCGAGB	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	87, 184
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	5 cut(s)	13, 114, 130, 288, 315
SfoI	GGCGCC	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	87, 184
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	5, 187
SspDI	GGCGCC	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	288, 315
TaqI	TCGA	2 cut(s)	159, 202
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	25, 239
TscAI	CASTG	2 cut(s)	45, 241
TseFI	GTSAC	2 cut(s)	36, 53
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	36, 53
TspRI	CASTG	2 cut(s)	45, 241
VpaK11BI	GGWCC	2 cut(s)	87, 184
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.