Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

20013 .. 20789

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggtggcgtgccgctcaagtcattacggcttgctgtgcaagtttacttgtagcccacgccgaggtaccccccctcctcctcgagtcgacggtcaaactccaggtcaacgttcgagggaagcttctcgattgttcccaggtcagctcctgctccagtccccattaattgttggccccattggcgacctgaacttgcctccagcggacgagacacagagactgaggcaggaactcgagcaatttcggaaggaaaaacgggaccgcgaggctcgtcatcgacgaaaacttgaaaggttcctacaacttgacagtgattcttcagacgacgacgccgtcggcgacctccatctaactaacaacggagtagcaaacgcaggcgccagcggcgttatgggaggaatctctggtggacccctcgtcgagggggtgggaggcacggcaaatgggggggcagaacgaagctggagtaggccaatccaaaaaggcgcgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.71

Weight (kDa)

9.29

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	2 cut(s)	65, 377
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	264, 488
AciI	CCGC	4 cut(s)	13, 203, 262, 384
AclI	AACGTT	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	2 cut(s)	330, 378
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	62, 421
AgsI	TTSAA	1 cut(s)	290
AhdI	GACNNNNNGTC	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	100, 136
AluBI	AGCT	3 cut(s)	122, 145, 462
AluI	AGCT	3 cut(s)	122, 145, 462
Alw26I	GTCTC	2 cut(s)	203, 211
AlwNI	CAGNNNCTG	2 cut(s)	148, 220
Ama87I	CYCGRG	2 cut(s)	81, 233
AoxI	GGCC	2 cut(s)	172, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	65
AspLEI	GCGC	3 cut(s)	380, 488, 490
AspS9I	GGNCC	3 cut(s)	173, 259, 410
AvaI	CYCGRG	2 cut(s)	81, 233
AvaII	GGWCC	2 cut(s)	259, 410
BanI	GGYRCC	2 cut(s)	65, 377
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	3 cut(s)	43, 317, 453
BciT130I	CCWGG	2 cut(s)	102, 138
BcoDI	GTCTC	2 cut(s)	203, 211
BfoI	RGCGCY	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	13, 385
BlsI	GCNGC	2 cut(s)	14, 386
Bme1390I	CCNGG	2 cut(s)	102, 138
Bme18I	GGWCC	2 cut(s)	259, 410
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmeT110I	CYCGRG	2 cut(s)	81, 233
BmgT120I	GGNCC	3 cut(s)	173, 259, 410
BmiI	GGNNCC	6 cut(s)	67, 175, 260, 296, 379, 412
BmrFI	CCNGG	2 cut(s)	102, 138
BpmI	CTGGAG	4 cut(s)	84, 137, 183, 484
BsaHI	GRCGYC	2 cut(s)	330, 378
BsaJI	CCNNGG	2 cut(s)	61, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 421
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	102, 138
BseDI	CCNNGG	2 cut(s)	61, 136
BseLI	CCNNNNNNNGG	2 cut(s)	62, 421
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	154
BsePI	GCGCGC	1 cut(s)	486
BseRI	GAGGAG	2 cut(s)	66, 69
Bsh1236I	CGCG	2 cut(s)	264, 488
BshFI	GGCC	2 cut(s)	174, 472
BshNI	GGYRCC	2 cut(s)	65, 377
BsiHKCI	CYCGRG	2 cut(s)	81, 233
BslFI	GGGAC	2 cut(s)	142, 272
BslI	CCNNNNNNNGG	2 cut(s)	62, 421
BsmAI	GTCTC	2 cut(s)	203, 211
BsmFI	GGGAC	2 cut(s)	142, 272
BsnI	GGCC	2 cut(s)	174, 472
BsoBI	CYCGRG	2 cut(s)	81, 233
BspACI	CCGC	4 cut(s)	13, 203, 262, 384
BspANI	GGCC	2 cut(s)	174, 472
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	264, 488
BspLI	GGNNCC	6 cut(s)	67, 175, 260, 296, 379, 412
BspT107I	GGYRCC	2 cut(s)	65, 377
BsrBI	CCGCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	61, 136
BssHII	GCGCGC	1 cut(s)	486
BssNI	GRCGYC	2 cut(s)	330, 378
Bst2UI	CCWGG	2 cut(s)	102, 138
Bst4CI	ACNGT	2 cut(s)	92, 311
BstACI	GRCGYC	2 cut(s)	330, 378
BstC8I	GCNNGC	5 cut(s)	10, 32, 376, 382, 488
BstDEI	CTNAG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstFNI	CGCG	2 cut(s)	264, 488
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	3 cut(s)	380, 488, 490
BstMAI	GTCTC	2 cut(s)	203, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 180, 384
BstNI	CCWGG	2 cut(s)	102, 138
BstSCI	CCNGG	2 cut(s)	100, 136
BstUI	CGCG	2 cut(s)	264, 488
BsuRI	GGCC	2 cut(s)	174, 472
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	5 cut(s)	10, 32, 376, 382, 488
CaiI	CAGNNNCTG	2 cut(s)	148, 220
CfoI	GCGC	3 cut(s)	380, 488, 490
Cfr13I	GGNCC	3 cut(s)	173, 259, 410
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	66
CviJI	RGCY	8 cut(s)	30, 54, 122, 145, 174, 269, 462, 472
CviKI_1	RGCY	8 cut(s)	30, 54, 122, 145, 174, 269, 462, 472
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	332
DriI	GACNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	259, 410
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	81, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	100, 136
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
FaiI	YATR	1 cut(s)	392
FaqI	GGGAC	2 cut(s)	142, 272
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	13, 385
Fsp4HI	GCNGC	2 cut(s)	13, 385
GlaI	GCGC	3 cut(s)	379, 487, 489
GluI	GCNGC	2 cut(s)	13, 385
GsuI	CTGGAG	4 cut(s)	84, 137, 183, 484
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	174, 472
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	3 cut(s)	380, 488, 490
Hin1I	GRCGYC	2 cut(s)	330, 378
Hin6I	GCGC	3 cut(s)	378, 486, 488
HinP1I	GCGC	3 cut(s)	378, 486, 488
HincII	GTYRAC	2 cut(s)	88, 107
HindII	GTYRAC	2 cut(s)	88, 107
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	3 cut(s)	84, 314, 399
Hpy166II	GTNNAC	4 cut(s)	45, 88, 107, 410
Hpy188I	TCNGA	2 cut(s)	246, 322
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	4 cut(s)	45, 88, 107, 410
Hpy99I	CGWCG	6 cut(s)	92, 282, 329, 332, 338, 422
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	92, 311
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 180, 384
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	109
Hsp92I	GRCGYC	2 cut(s)	330, 378
HspAI	GCGC	3 cut(s)	378, 486, 488
KasI	GGCGCC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	150, 156
MaeII	ACGT	1 cut(s)	109
MbiI	CCGCTC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	309
MluCI	AATT	2 cut(s)	165, 239
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	203, 384
MspR9I	CCNGG	2 cut(s)	102, 138
MvaI	CCWGG	2 cut(s)	102, 138
MvnI	CGCG	2 cut(s)	264, 488
MwoI	GCNNNNNNNGC	3 cut(s)	36, 180, 384
NarI	GGCGCC	1 cut(s)	378
NlaIV	GGNNCC	6 cut(s)	67, 175, 260, 296, 379, 412
NmeAIII	GCCGAG	1 cut(s)	86
PaeR7I	CTCGAG	2 cut(s)	81, 233
PauI	GCGCGC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	3 cut(s)	277, 330, 336
PfeI	GAWTC	2 cut(s)	314, 399
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	14, 386
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	100, 136
PspGI	CCWGG	2 cut(s)	100, 136
PspN4I	GGNNCC	6 cut(s)	67, 175, 260, 296, 379, 412
PspPI	GGNCC	3 cut(s)	173, 259, 410
PspXI	VCTCGAGB	2 cut(s)	81, 233
PstNI	CAGNNNCTG	2 cut(s)	148, 220
PsyI	GACNNNGTC	1 cut(s)	332
PteI	GCGCGC	1 cut(s)	486
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	13, 385
Sau96I	GGNCC	3 cut(s)	173, 259, 410
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	102, 138
SfoI	GGCGCC	1 cut(s)	379
Sfr274I	CTCGAG	2 cut(s)	81, 233
SinI	GGWCC	2 cut(s)	259, 410
SlaI	CTCGAG	2 cut(s)	81, 233
SmlI	CTYRAG	3 cut(s)	16, 81, 233
SmoI	CTYRAG	3 cut(s)	16, 81, 233
Sse9I	AATT	2 cut(s)	165, 239
SsiI	CCGC	4 cut(s)	13, 203, 262, 384
SspDI	GGCGCC	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	100, 136
TaaI	ACNGT	2 cut(s)	92, 311
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	7 cut(s)	82, 87, 113, 127, 234, 277, 420
TasI	AATT	2 cut(s)	165, 239
TauI	GCSGC	2 cut(s)	15, 387
TfiI	GAWTC	2 cut(s)	314, 399
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	259, 410
VspI	ATTAAT	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XhoI	CTCGAG	2 cut(s)	81, 233
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.