Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013284.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

9666 .. 14742

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013284.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgtcttcgagttataatcctcggaccagcagtcaattcctccacatcgataacaaagatcatgttgattctggtggcgataggccggaccagtgttcctttcaacttgggcttgctgagttatggcatcatggtttctaccacgtggagcctaattacgtggcctcttggactttggccaagtggcagatgggcttttgcgcaggacgccttgctgcaattccagttggggaagttcgattagtgcctcacagccttgcaggagtgcctcaagaggaaggccggcgatcccaaagtatgtcaatgttcctcaagaaatcaacaggtcggcagggccctgcatctcagggccttgttgtgccagttatccgcaatgttgataagatgaattgtggtgagatagagaaggagatcaatttgcttgcaaagaaggcaaatgaaggacgtctttcaattgatgatatggctggaggttcatttacaatatccagtggtggattttatggaagccttataagtacccctatcatcaaccctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl

Protein Analysis

180

Amino Acids

19.62

Weight (kDa)

7.01

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 515
AatII	GACGTC	1 cut(s)	448
Acc16I	TGCGCA	1 cut(s)	202
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	145
AcyI	GRCGYC	2 cut(s)	208, 445
AfaI	GTAC	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	104, 453
AhdI	GACNNNNNGTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	6 cut(s)	83, 162, 177, 280, 334, 349
ApaI	GGGCCC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	5 cut(s)	24, 88, 334, 335, 349
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	24, 88
BaeGI	GKGCMC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	338
BbrPI	CACGTG	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	24, 88
BmeRI	GACNNNNNGTC	1 cut(s)	30
BmgT120I	GGNCC	5 cut(s)	24, 88, 334, 335, 349
BmiI	GGNNCC	2 cut(s)	150, 336
BmsI	GCATC	2 cut(s)	136, 350
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	255, 296
Bsa29I	ATCGAT	1 cut(s)	48
BsaAI	YACGTR	2 cut(s)	145, 160
BsaHI	GRCGYC	2 cut(s)	208, 445
BsaJI	CCNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	4 cut(s)	91, 224, 362, 489
Bse3DI	GCAATG	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	108, 359
BseNI	ACTGG	4 cut(s)	91, 224, 362, 489
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	6 cut(s)	85, 164, 179, 282, 336, 351
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	86, 283
BsnI	GGCC	6 cut(s)	85, 164, 179, 282, 336, 351
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	58, 287, 411
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	6 cut(s)	85, 164, 179, 282, 336, 351
BspCNI	CTCAG	2 cut(s)	109, 358
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	150, 336
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	4 cut(s)	91, 224, 362, 489
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	3 cut(s)	58, 287, 411
BssNI	GRCGYC	2 cut(s)	208, 445
BstACI	GRCGYC	2 cut(s)	208, 445
BstBAI	YACGTR	2 cut(s)	145, 160
BstC8I	GCNNGC	3 cut(s)	114, 284, 423
BstDEI	CTNAG	3 cut(s)	117, 345, 540
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	61, 290, 414
BstMBI	GATC	3 cut(s)	58, 287, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 431
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	85, 164, 179, 282, 336, 351
BsuTUI	ATCGAT	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	98, 496
Cac8I	GCNNGC	3 cut(s)	114, 284, 423
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	5 cut(s)	24, 88, 334, 335, 349
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	2 cut(s)	62, 131
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	3 cut(s)	117, 345, 540
DpnI	GATC	3 cut(s)	60, 289, 413
DpnII	GATC	3 cut(s)	58, 287, 411
DriI	GACNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	177
Eam1105I	GACNNNNNGTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	24, 88
Eco72I	CACGTG	1 cut(s)	145
EcoO109I	RGGNCCY	3 cut(s)	334, 335, 349
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	2 cut(s)	65, 134
FaiI	YATR	8 cut(s)	15, 63, 124, 132, 299, 464, 504, 515
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	2 cut(s)	61, 130
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	216
FspI	TGCGCA	1 cut(s)	202
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	6 cut(s)	85, 164, 179, 282, 336, 351
HapII	CCGG	2 cut(s)	86, 283
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	2 cut(s)	208, 445
Hin1II	CATG	2 cut(s)	65, 134
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	86, 283
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	272, 313
HpyAV	CCTTC	4 cut(s)	272, 400, 424, 434
HpyCH4IV	ACGT	3 cut(s)	144, 159, 445
HpyCH4V	TGCA	4 cut(s)	218, 260, 341, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 431
HpyF3I	CTNAG	3 cut(s)	117, 345, 540
HpySE526I	ACGT	3 cut(s)	144, 159, 445
Hsp92I	GRCGYC	2 cut(s)	208, 445
Hsp92II	CATG	2 cut(s)	65, 134
HspAI	GCGC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	58, 287, 411
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	136, 350
MaeII	ACGT	3 cut(s)	144, 159, 445
MalI	GATC	3 cut(s)	60, 289, 413
MboI	GATC	3 cut(s)	58, 287, 411
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	6 cut(s)	35, 154, 219, 388, 415, 453
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	8 cut(s)	30, 50, 175, 258, 268, 279, 320, 464
Mox20I	TGGCCA	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	86, 283
MunI	CAATTG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	207, 431
NaeI	GCCGGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	58, 287, 411
NgoMIV	GCCGGC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	65, 134
NlaIV	GGNNCC	2 cut(s)	150, 336
NsbI	TGCGCA	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
Ppu21I	YACGTR	2 cut(s)	145, 160
PsiI	TTATAA	2 cut(s)	15, 515
PspCI	CACGTG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	150, 336
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	5 cut(s)	24, 88, 334, 335, 349
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	58, 287, 411
Sau96I	GGNCC	5 cut(s)	24, 88, 334, 335, 349
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	5 cut(s)	147, 162, 328, 448, 475
SfaNI	GCATC	2 cut(s)	136, 350
SinI	GGWCC	2 cut(s)	24, 88
SmlI	CTYRAG	2 cut(s)	270, 311
SmoI	CTYRAG	2 cut(s)	270, 311
Sse9I	AATT	6 cut(s)	35, 154, 219, 388, 415, 453
SsiI	CCGC	1 cut(s)	370
TaiI	ACGT	3 cut(s)	147, 162, 448
TaqI	TCGA	3 cut(s)	8, 48, 238
TasI	AATT	6 cut(s)	35, 154, 219, 388, 415, 453
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	2 cut(s)	98, 496
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	401, 453, 465
TspRI	CASTG	2 cut(s)	98, 496
VpaK11BI	GGWCC	2 cut(s)	24, 88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
ZraI	GACGTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.