Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

286640 .. 287116

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcgggagctacccctgacgggattccatttctgttactgaggactggtagtgacgaaattcctccgcaccagcctccgaacgggtccatcccgagccccatcgacgacctgaacttgcctccggctgatgaaatgcaaaggctaaggcaggaactcgagcaattgcggagggaaaagcaggaccgcgagactcgtcgacgacgaaaacttgaaaggttcctacaacttgacagtgattcgtcagacgacgacgccgtcggcgatctccatcaaactaacaacagaatagcgaacgcaggcgccagcggcgttatgggaggaatctctggtggacccctcgtcgagggggtgggaggcacggcaaatggggggcagaacggagccggaataggccaatccaaaagggcacgcaatgaatcgtggcaccagaagatggagaaaatgattgatgcatgcaaacgtgccagcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.1

Weight (kDa)

5.93

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccB1I	GGYRCC	2 cut(s)	302, 426
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	199
AccII	CGCG	1 cut(s)	189
AciI	CCGC	5 cut(s)	5, 68, 169, 187, 309
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	255, 303
AfiI	CCNNNNNNNGG	4 cut(s)	21, 83, 346, 436
AgsI	TTSAA	1 cut(s)	215
AhdI	GACNNNNNGTC	1 cut(s)	341
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	2 cut(s)	94, 158
AoxI	GGCC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	3 cut(s)	87, 184, 335
AvaI	CYCGRG	2 cut(s)	94, 158
AvaII	GGWCC	3 cut(s)	87, 184, 335
BaeGI	GKGCMC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	302, 426
BanII	GRGCYC	1 cut(s)	101
BccI	CCATC	4 cut(s)	98, 110, 279, 430
BceAI	ACGGC	2 cut(s)	242, 378
BcoDI	GTCTC	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme18I	GGWCC	3 cut(s)	87, 184, 335
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	2 cut(s)	94, 158
BmgT120I	GGNCC	3 cut(s)	87, 184, 335
BmiI	GGNNCC	6 cut(s)	88, 221, 304, 337, 385, 428
BmsI	GCATC	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	2 cut(s)	255, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 83, 346, 436
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	21, 83, 346, 436
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	302, 426
BsiHKCI	CYCGRG	2 cut(s)	94, 158
BsiSI	CCGG	2 cut(s)	125, 387
BslI	CCNNNNNNNGG	4 cut(s)	21, 83, 346, 436
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	2 cut(s)	94, 158
Bsp1286I	GDGCHC	2 cut(s)	101, 412
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	5 cut(s)	5, 68, 169, 187, 309
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	6 cut(s)	88, 221, 304, 337, 385, 428
BspT107I	GGYRCC	2 cut(s)	302, 426
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	2 cut(s)	255, 303
Bst4CI	ACNGT	1 cut(s)	236
BstACI	GRCGYC	2 cut(s)	255, 303
BstC8I	GCNNGC	5 cut(s)	301, 307, 412, 457, 469
BstDEI	CTNAG	2 cut(s)	41, 146
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	5 cut(s)	301, 307, 412, 457, 469
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	87, 184, 335
CseI	GACGC	1 cut(s)	263
CviAII	CATG	1 cut(s)	456
CviJI	RGCY	8 cut(s)	11, 76, 99, 128, 145, 386, 396, 471
CviKI_1	RGCY	8 cut(s)	11, 76, 99, 128, 145, 386, 396, 471
DdeI	CTNAG	2 cut(s)	41, 146
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DrdI	GACNNNNNNGTC	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	87, 184, 335
Eco88I	CYCGRG	2 cut(s)	94, 158
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	101
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
FaeI	CATG	1 cut(s)	459
FaiI	YATR	2 cut(s)	317, 457
FatI	CATG	1 cut(s)	455
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	310
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	125, 387
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	2 cut(s)	255, 303
Hin1II	CATG	1 cut(s)	459
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	5 cut(s)	25, 193, 239, 324, 419
HpaII	CCGG	2 cut(s)	125, 387
Hpy166II	GTNNAC	2 cut(s)	200, 335
Hpy188I	TCNGA	2 cut(s)	81, 247
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	200, 335
Hpy99I	CGWCG	8 cut(s)	110, 201, 204, 207, 254, 257, 263, 347
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	139, 455, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	2 cut(s)	255, 303
Hsp92II	CATG	1 cut(s)	459
HspAI	GCGC	1 cut(s)	303
KasI	GGCGCC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	8, 383
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	445
MfeI	CAATTG	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	101, 412
MluCI	AATT	2 cut(s)	60, 164
Mly113I	GGCGCC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	36, 75, 87, 132, 165, 314, 340, 350, 350
Mph1103I	ATGCAT	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	2 cut(s)	125, 387
MunI	CAATTG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	309
NarI	GGCGCC	1 cut(s)	303
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	459
NlaIV	GGNNCC	6 cut(s)	88, 221, 304, 337, 385, 428
NmuCI	GTSAC	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	3 cut(s)	202, 255, 261
PfeI	GAWTC	4 cut(s)	25, 239, 324, 419
PflFI	GACNNNGTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	6 cut(s)	88, 221, 304, 337, 385, 428
PspPI	GGNCC	3 cut(s)	87, 184, 335
PspXI	VCTCGAGB	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	198
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	3 cut(s)	87, 184, 335
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	2 cut(s)	101, 412
SetI	ASST	4 cut(s)	13, 114, 221, 466
SfaNI	GCATC	1 cut(s)	442
SfoI	GGCGCC	1 cut(s)	304
Sfr274I	CTCGAG	1 cut(s)	158
SgrDI	CGTCGACG	1 cut(s)	198
SinI	GGWCC	3 cut(s)	87, 184, 335
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	2 cut(s)	60, 164
SsiI	CCGC	5 cut(s)	5, 68, 169, 187, 309
SspDI	GGCGCC	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	4 cut(s)	105, 159, 199, 345
TasI	AATT	2 cut(s)	60, 164
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	4 cut(s)	25, 239, 324, 419
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	147, 432
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	87, 184, 335
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.