Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003652.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

33751 .. 36535

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003652.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgacccttcaacaaagttggtatttagagttccgcgactggcgtaatactcatcaactgctttggctaccgcatagcatgtgcgggaccaacagtcaattcctccacatcgataacaaagattatgttaattttggtggcggtgagctggatcagtgttcctttcaacttaggcttgctgagctagggcatcacaattcccaccacatgggccttggccatctagagttggattacgtgtgccttggcctcttgggccttggccacctgactgactgtcatgtggtgatggcgggaactgcccctgacgggatcccatttttgtcactgaggactggaagtgacaaaattttgccctaccagccctcaaatgggtccatcccagacccaattagtgttatgaacttgcctcccgttgacgagacgcaaaggctgagacaagagctcgagcaactccgaaaggaaaagcaaaaccgcgagggcccccgacagcaaaaactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

6.02

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccII	CGCG	2 cut(s)	36, 477
AciI	CCGC	6 cut(s)	34, 71, 84, 141, 293, 475
AclWI	GGATC	3 cut(s)	159, 307, 320
AcoI	YGGCCR	2 cut(s)	217, 262
AcsI	RAATTY	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	208, 309, 371, 372
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	11, 167
AhdI	GACNNNNNGTC	2 cut(s)	93, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	148, 184, 445
AluI	AGCT	3 cut(s)	148, 184, 445
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	2 cut(s)	416, 430
AlwI	GGATC	3 cut(s)	159, 307, 320
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	6 cut(s)	211, 217, 247, 256, 262, 481
ApaI	GGGCCC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	348
AspS9I	GGNCC	6 cut(s)	87, 211, 256, 375, 481, 482
AsuHPI	GGTGA	2 cut(s)	155, 298
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	87, 375
BaeGI	GKGCMC	1 cut(s)	485
BalI	TGGCCA	2 cut(s)	219, 264
BamHI	GGATCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	447, 485
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	3 cut(s)	228, 283, 386
BcoDI	GTCTC	2 cut(s)	416, 430
BfaI	CTAG	2 cut(s)	185, 224
BglI	GCCNNNNNGGC	1 cut(s)	255
BlpI	GCTNAGC	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	87, 375
BmeRI	GACNNNNNGTC	2 cut(s)	93, 276
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	6 cut(s)	87, 211, 256, 375, 481, 482
BmiI	GGNNCC	5 cut(s)	88, 314, 376, 483, 484
BmsI	GCATC	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	214, 244, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 309, 371, 372
Bse1I	ACTGG	2 cut(s)	44, 340
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	214, 244, 259
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	4 cut(s)	208, 309, 371, 372
BseMII	CTCAG	3 cut(s)	171, 320, 425
BseNI	ACTGG	2 cut(s)	44, 340
BseSI	GKGCMC	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	36, 477
BshFI	GGCC	6 cut(s)	213, 219, 249, 258, 264, 483
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	208, 309, 371, 372
BsmAI	GTCTC	2 cut(s)	416, 430
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	6 cut(s)	213, 219, 249, 258, 264, 483
BsoBI	CYCGRG	1 cut(s)	446
Bsp120I	GGGCCC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	447, 485
Bsp143I	GATC	2 cut(s)	151, 312
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	6 cut(s)	34, 71, 84, 141, 293, 475
BspANI	GGCC	6 cut(s)	213, 219, 249, 258, 264, 483
BspCNI	CTCAG	3 cut(s)	172, 321, 426
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	2 cut(s)	36, 477
BspLI	GGNNCC	5 cut(s)	88, 314, 376, 483, 484
BspPI	GGATC	3 cut(s)	159, 307, 320
BsrI	ACTGG	2 cut(s)	44, 340
BssECI	CCNNGG	3 cut(s)	214, 244, 259
BssMI	GATC	2 cut(s)	151, 312
BssT1I	CCWWGG	3 cut(s)	214, 244, 259
Bst4CI	ACNGT	2 cut(s)	95, 278
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	170, 180, 329, 434
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	36, 477
BstKTI	GATC	2 cut(s)	154, 315
BstMAI	GTCTC	2 cut(s)	416, 430
BstMBI	GATC	2 cut(s)	151, 312
BstMWI	GCNNNNNNNGC	4 cut(s)	181, 255, 299, 361
BstNSI	RCATGY	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	485
BstUI	CGCG	2 cut(s)	36, 477
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	6 cut(s)	213, 219, 249, 258, 264, 483
BsuTUI	ATCGAT	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	161, 326
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	6 cut(s)	87, 211, 256, 375, 481, 482
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	433
CviAII	CATG	3 cut(s)	79, 208, 281
DdeI	CTNAG	4 cut(s)	170, 180, 329, 434
DpnI	GATC	2 cut(s)	153, 314
DpnII	GATC	2 cut(s)	151, 312
DriI	GACNNNNNGTC	2 cut(s)	93, 276
EaeI	YGGCCR	2 cut(s)	217, 262
Eam1105I	GACNNNNNGTC	2 cut(s)	93, 276
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	3 cut(s)	214, 244, 259
Eco24I	GRGCYC	2 cut(s)	447, 485
Eco47I	GGWCC	2 cut(s)	87, 375
Eco53kI	GAGCTC	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	2 cut(s)	481, 482
EcoT14I	CCWWGG	3 cut(s)	214, 244, 259
EcoT38I	GRGCYC	2 cut(s)	447, 485
ErhI	CCWWGG	3 cut(s)	214, 244, 259
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	3 cut(s)	82, 211, 284
FaiI	YATR	6 cut(s)	75, 80, 126, 209, 282, 401
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	78, 207, 280
FauI	CCCGC	2 cut(s)	77, 286
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	447, 485
FspBI	CTAG	2 cut(s)	185, 224
HaeIII	GGCC	6 cut(s)	213, 219, 249, 258, 264, 483
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	82, 211, 284
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	155, 298
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	95, 278
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	181, 255, 299, 361
HpyF3I	CTNAG	4 cut(s)	170, 180, 329, 434
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	82, 211, 284
Kzo9I	GATC	2 cut(s)	151, 312
LpnPI	CCDG	7 cut(s)	25, 134, 281, 318, 321, 374, 396
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	185, 224
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	324, 341
MalI	GATC	2 cut(s)	153, 314
MboI	GATC	2 cut(s)	151, 312
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	447, 485
MlsI	TGGCCA	2 cut(s)	219, 264
MluCI	AATT	5 cut(s)	98, 130, 196, 348, 390
MluNI	TGGCCA	2 cut(s)	219, 264
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	113, 260, 324, 376, 420, 472
Mox20I	TGGCCA	2 cut(s)	219, 264
MscI	TGGCCA	2 cut(s)	219, 264
MseI	TTAA	2 cut(s)	129, 502
Msp20I	TGGCCA	2 cut(s)	219, 264
MvnI	CGCG	2 cut(s)	36, 477
MwoI	GCNNNNNNNGC	4 cut(s)	181, 255, 299, 361
NdeII	GATC	2 cut(s)	151, 312
NlaIII	CATG	3 cut(s)	82, 211, 284
NlaIV	GGNNCC	5 cut(s)	88, 314, 376, 483, 484
NmuCI	GTSAC	2 cut(s)	324, 341
NspI	RCATGY	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	5 cut(s)	88, 314, 376, 483, 484
PspOMI	GGGCCC	1 cut(s)	481
PspPI	GGNCC	6 cut(s)	87, 211, 256, 375, 481, 482
PspXI	VCTCGAGB	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	14, 46
PsuI	RGATCY	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	129, 502
Sau3AI	GATC	2 cut(s)	151, 312
Sau96I	GGNCC	6 cut(s)	87, 211, 256, 375, 481, 482
SduI	GDGCHC	2 cut(s)	447, 485
SetI	ASST	5 cut(s)	150, 186, 240, 270, 447
SfaNI	GCATC	1 cut(s)	199
SfiI	GGCCNNNNNGGCC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	446
SinI	GGWCC	2 cut(s)	87, 375
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	98, 130, 196, 348, 390
SsiI	CCGC	6 cut(s)	34, 71, 84, 141, 293, 475
SspMI	CTAG	2 cut(s)	185, 224
SstI	GAGCTC	1 cut(s)	447
StyI	CCWWGG	3 cut(s)	214, 244, 259
TaaI	ACNGT	2 cut(s)	95, 278
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	111, 447
TasI	AATT	5 cut(s)	98, 130, 196, 348, 390
Tru1I	TTAA	2 cut(s)	129, 502
Tru9I	TTAA	2 cut(s)	129, 502
TscAI	CASTG	2 cut(s)	161, 333
TseFI	GTSAC	2 cut(s)	324, 341
Tsp45I	GTSAC	2 cut(s)	324, 341
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	161, 333
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	87, 375
XapI	RAATTY	1 cut(s)	348
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 368
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	2 cut(s)	185, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.