Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8163034.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 664

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8163034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 664 bp

cctccccaccagccgccgaatgggtccatccctagccccattggcgacctgaacttgcctccagctgacgagacacagagactgaggcaggaactcgagcaatttcagaaggaaaaacgggaccgcgaggctcgtcgtcgacgaaaacttgaaaggttcctacaacttgacagtgattcgtcggacgatgatgccatcggcgatctccaccaaaccaacaacgtggtagcaaatgcaggccccagcggcgttatcgagggaatctctggcggacccctcgtcgaaggggtaggaggcacgtcgaatggagggcagaacggcggagccggtctagtccaatccaagagggcgcgcaacgaatcctggtgcgagaagatggaaaagatgatcgatgcatgcaagcgtgccggcccacgagagttggcggcgaaaatcgcaagggacgtcggtaagtctccgtttaccgacgatattctgaatgcggcaaagccccgtaggtttaccacgccggtattccacaaacacgacggaacgacagatccggtggaccacatcaaggggtacaaaaaacagatgtccatcgagacaaccgatgagaaattaatgtcaagatctttccttccagtctcacgggaccggcctcgacatggttccaagatctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

221

Amino Acids

24.32

Weight (kDa)

9.12

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	2 cut(s)	126, 352
AciI	CCGC	7 cut(s)	14, 124, 246, 270, 321, 425, 482
AclWI	GGATC	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	20, 556, 647
AgsI	TTSAA	1 cut(s)	152
AhdI	GACNNNNNGTC	1 cut(s)	278
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	362
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	5 cut(s)	65, 73, 459, 578, 631
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	238, 409, 638
AseI	ATTAAT	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	352, 354
AspS9I	GGNCC	7 cut(s)	24, 121, 239, 272, 410, 547, 634
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	5 cut(s)	24, 121, 272, 547, 634
BauI	CACGAG	1 cut(s)	414
BccI	CCATC	4 cut(s)	35, 203, 370, 587
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	5 cut(s)	65, 73, 459, 578, 631
BfaI	CTAG	2 cut(s)	33, 332
BglI	GCCNNNNNGGC	2 cut(s)	42, 246
BglII	AGATCT	2 cut(s)	611, 657
BisI	GCNGC	4 cut(s)	14, 247, 426, 483
BlsI	GCNGC	4 cut(s)	15, 248, 427, 484
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	5 cut(s)	24, 121, 272, 547, 634
BmeRI	GACNNNNNGTC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	7 cut(s)	24, 121, 239, 272, 410, 547, 634
BmiI	GGNNCC	8 cut(s)	25, 122, 158, 241, 274, 325, 635, 652
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	181, 382
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 556, 647
Bse118I	RCCGGY	4 cut(s)	326, 407, 508, 636
Bse1I	ACTGG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	390
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	578
BseLI	CCNNNNNNNGG	3 cut(s)	20, 556, 647
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	623
BsePI	GCGCGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	126, 352
BshFI	GGCC	3 cut(s)	240, 411, 640
BshVI	ATCGAT	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	5 cut(s)	327, 408, 509, 542, 637
BslFI	GGGAC	3 cut(s)	134, 455, 647
BslI	CCNNNNNNNGG	3 cut(s)	20, 556, 647
BsmAI	GTCTC	5 cut(s)	65, 73, 459, 578, 631
BsmFI	GGGAC	3 cut(s)	134, 455, 647
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	240, 411, 640
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	5 cut(s)	202, 387, 538, 611, 657
BspACI	CCGC	7 cut(s)	14, 124, 246, 270, 321, 425, 482
BspANI	GGCC	3 cut(s)	240, 411, 640
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	126, 352
BspLI	GGNNCC	8 cut(s)	25, 122, 158, 241, 274, 325, 635, 652
BspPI	GGATC	1 cut(s)	533
BsrFI	RCCGGY	4 cut(s)	326, 407, 508, 636
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	4 cut(s)	326, 407, 508, 636
BssHII	GCGCGC	1 cut(s)	350
BssMI	GATC	5 cut(s)	202, 387, 538, 611, 657
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	6 cut(s)	238, 352, 397, 401, 405, 409
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	126, 352
BstHHI	GCGC	2 cut(s)	352, 354
BstKTI	GATC	5 cut(s)	205, 390, 541, 614, 660
BstMAI	GTCTC	5 cut(s)	65, 73, 459, 578, 631
BstMBI	GATC	5 cut(s)	202, 387, 538, 611, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 246, 434
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	2 cut(s)	126, 352
BstX2I	RGATCY	3 cut(s)	538, 611, 657
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	538, 611, 657
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	240, 411, 640
BsuTUI	ATCGAT	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	6 cut(s)	238, 352, 397, 401, 405, 409
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	2 cut(s)	352, 354
Cfr10I	RCCGGY	4 cut(s)	326, 407, 508, 636
Cfr13I	GGNCC	7 cut(s)	24, 121, 239, 272, 410, 547, 634
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	562
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	2 cut(s)	396, 647
CviJI	RGCY	9 cut(s)	13, 36, 65, 131, 240, 326, 411, 490, 640
CviKI_1	RGCY	9 cut(s)	13, 36, 65, 131, 240, 326, 411, 490, 640
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	5 cut(s)	204, 389, 540, 613, 659
DpnII	GATC	5 cut(s)	202, 387, 538, 611, 657
DriI	GACNNNNNGTC	1 cut(s)	278
Eam1105I	GACNNNNNGTC	1 cut(s)	278
EciI	GGCGGA	2 cut(s)	285, 336
Eco47I	GGWCC	5 cut(s)	24, 121, 272, 547, 634
Eco88I	CYCGRG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	2 cut(s)	399, 650
FaiI	YATR	2 cut(s)	397, 648
FaqI	GGGAC	3 cut(s)	134, 455, 647
FatI	CATG	2 cut(s)	395, 646
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	14, 247, 426, 483
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	14, 247, 426, 483
FspBI	CTAG	2 cut(s)	33, 332
GlaI	GCGC	2 cut(s)	351, 353
GluI	GCNGC	4 cut(s)	14, 247, 426, 483
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	240, 411, 640
HapII	CCGG	5 cut(s)	327, 408, 509, 542, 637
HhaI	GCGC	2 cut(s)	352, 354
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	399, 650
Hin6I	GCGC	2 cut(s)	350, 352
HinP1I	GCGC	2 cut(s)	350, 352
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	3 cut(s)	176, 261, 359
HpaII	CCGG	5 cut(s)	327, 408, 509, 542, 637
Hpy166II	GTNNAC	4 cut(s)	140, 462, 501, 547
Hpy188I	TCNGA	3 cut(s)	108, 184, 477
Hpy188III	TCNNGA	2 cut(s)	583, 609
Hpy8I	GTNNAC	4 cut(s)	140, 462, 501, 547
Hpy99I	CGWCG	9 cut(s)	138, 141, 144, 184, 284, 304, 449, 470, 530
HpyAV	CCTTC	3 cut(s)	103, 278, 629
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	3 cut(s)	222, 299, 444
HpyCH4V	TGCA	3 cut(s)	236, 395, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 246, 434
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	3 cut(s)	222, 299, 444
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	399, 650
HspAI	GCGC	2 cut(s)	350, 352
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	202, 387, 538, 611, 657
LmnI	GCTCC	1 cut(s)	323
LweI	GCATC	2 cut(s)	181, 382
MaeI	CTAG	2 cut(s)	33, 332
MaeII	ACGT	3 cut(s)	222, 299, 444
MalI	GATC	5 cut(s)	204, 389, 540, 613, 659
MboI	GATC	5 cut(s)	202, 387, 538, 611, 657
MboII	GAAGA	1 cut(s)	385
MflI	RGATCY	3 cut(s)	538, 611, 657
MluCI	AATT	2 cut(s)	101, 599
MmeI	TCCRAC	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	397
MroNI	GCCGGC	1 cut(s)	407
MseI	TTAA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	65, 246
MspI	CCGG	5 cut(s)	327, 408, 509, 542, 637
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	2 cut(s)	126, 352
MwoI	GCNNNNNNNGC	3 cut(s)	42, 246, 434
NaeI	GCCGGC	1 cut(s)	409
NdeII	GATC	5 cut(s)	202, 387, 538, 611, 657
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	2 cut(s)	399, 650
NlaIV	GGNNCC	8 cut(s)	25, 122, 158, 241, 274, 325, 635, 652
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	95
PauI	GCGCGC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 441, 588
PctI	GAATGC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	176, 261, 359
PkrI	GCNGC	4 cut(s)	15, 248, 427, 484
PshBI	ATTAAT	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	8 cut(s)	25, 122, 158, 241, 274, 325, 635, 652
PspPI	GGNCC	7 cut(s)	24, 121, 239, 272, 410, 547, 634
PspXI	VCTCGAGB	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	3 cut(s)	538, 611, 657
PteI	GCGCGC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	4 cut(s)	14, 247, 426, 483
Sau3AI	GATC	5 cut(s)	202, 387, 538, 611, 657
Sau96I	GGNCC	7 cut(s)	24, 121, 239, 272, 410, 547, 634
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	7 cut(s)	51, 67, 158, 225, 302, 447, 500
SfaNI	GCATC	2 cut(s)	181, 382
Sfr274I	CTCGAG	1 cut(s)	95
SgrDI	CGTCGACG	1 cut(s)	138
SinI	GGWCC	5 cut(s)	24, 121, 272, 547, 634
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	2 cut(s)	101, 599
SsiI	CCGC	7 cut(s)	14, 124, 246, 270, 321, 425, 482
SspMI	CTAG	2 cut(s)	33, 332
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	3 cut(s)	225, 302, 447
TaqI	TCGA	8 cut(s)	96, 139, 255, 282, 302, 390, 582, 643
TasI	AATT	2 cut(s)	101, 599
TauI	GCSGC	4 cut(s)	16, 249, 428, 485
TfiI	GAWTC	3 cut(s)	176, 261, 359
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	1 cut(s)	178
TspGWI	ACGGA	2 cut(s)	447, 543
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	5 cut(s)	24, 121, 272, 547, 634
VspI	ATTAAT	1 cut(s)	602
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	2 cut(s)	33, 332
ZraI	GACGTC	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.