Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

9044017 .. 9044603

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGGCGCTTGAACCCGAACCGAGCCGCCAACCACCGAGCCGCTTCGGAGGAAACCCTCGACGCCGCCGGGCAAAAGGAAGGTTCTAGTAGGCACCCCCTCACCCCTCGTCGTGGGCGAGGGTGGGATGATGGACCACACCTCACTGCGCGGGGGTGGGATGGCGTGACGCATTTTGACTATGCGAGATATGGTGGTTATGCAATCGGTTTTGTATGGGGAGTGGGGGCAATCCCATCCCCGGATGTTGTTAAGACGCAATGCGAGACGGATAGATCCTCCATTCCGGTTTGCGTACGCGAGCACGCCAAGAAAAACAAGGGGGCAAATAGGAGGGAACGGGGAATAAACTTTGATTGCCCCCACCCCACTCGAAATAGACTGCGATTTCGAGGCGCCCTCGTCGAAATAAAACTCGGATTTCGAGGCGCCTTCGTCGAAATACACTCCGATTTCGAGGCACCTTCCTTGAAATACACTCCGATTTTGAGGCGCCTTTCGTCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.97

Weight (kDa)

10.26

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	93, 395, 428, 460, 492
AccII	CGCG	2 cut(s)	151, 300
AciI	CCGC	4 cut(s)	27, 42, 66, 151
AclWI	GGATC	1 cut(s)	270
AcyI	GRCGYC	4 cut(s)	63, 396, 429, 493
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	113, 241
AgsI	TTSAA	2 cut(s)	13, 472
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspLEI	GCGC	5 cut(s)	9, 151, 398, 431, 495
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	2 cut(s)	70, 242
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	5 cut(s)	93, 395, 428, 460, 492
Bbv12I	GWGCWC	1 cut(s)	306
BccI	CCATC	3 cut(s)	125, 155, 244
BcnI	CCSGG	2 cut(s)	70, 242
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	4 cut(s)	10, 399, 432, 496
BisI	GCNGC	3 cut(s)	27, 42, 66
BlsI	GCNGC	3 cut(s)	28, 43, 67
Bme1390I	CCNGG	2 cut(s)	70, 242
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	5 cut(s)	95, 397, 430, 462, 494
BmrFI	CCNGG	2 cut(s)	70, 242
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpuMI	CCSGG	2 cut(s)	70, 242
BsaHI	GRCGYC	4 cut(s)	63, 396, 429, 493
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 241
Bse3DI	GCAATG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	4 cut(s)	133, 166, 236, 250
BseLI	CCNNNNNNNGG	2 cut(s)	113, 241
BseMI	GCAATG	1 cut(s)	266
Bsh1236I	CGCG	2 cut(s)	151, 300
BshNI	GGYRCC	5 cut(s)	93, 395, 428, 460, 492
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	69, 242, 287
BsiWI	CGTACG	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	113, 241
BsmAI	GTCTC	1 cut(s)	260
BsmBI	CGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	4 cut(s)	27, 42, 66, 151
BspFNI	CGCG	2 cut(s)	151, 300
BspLI	GGNNCC	5 cut(s)	95, 397, 430, 462, 494
BspPI	GGATC	1 cut(s)	270
BspT107I	GGYRCC	5 cut(s)	93, 395, 428, 460, 492
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	275
BssNI	GRCGYC	4 cut(s)	63, 396, 429, 493
BstACI	GRCGYC	4 cut(s)	63, 396, 429, 493
BstC8I	GCNNGC	2 cut(s)	302, 306
BstF5I	GGATG	4 cut(s)	133, 166, 236, 250
BstFNI	CGCG	2 cut(s)	151, 300
BstH2I	RGCGCY	4 cut(s)	10, 399, 432, 496
BstHHI	GCGC	5 cut(s)	9, 151, 398, 431, 495
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	68, 240
BstUI	CGCG	2 cut(s)	151, 300
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BtsCI	GGATG	4 cut(s)	133, 166, 236, 250
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	302, 306
CfoI	GCGC	5 cut(s)	9, 151, 398, 431, 495
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	3 cut(s)	71, 178, 265
Csp6I	GTAC	1 cut(s)	296
CviJI	RGCY	2 cut(s)	26, 41
CviKI_1	RGCY	2 cut(s)	26, 41
CviQI	GTAC	1 cut(s)	296
DinI	GGCGCC	3 cut(s)	397, 430, 494
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	134
EgeI	GGCGCC	3 cut(s)	397, 430, 494
EheI	GGCGCC	3 cut(s)	397, 430, 494
Esp3I	CGTCTC	1 cut(s)	260
FaiI	YATR	4 cut(s)	183, 192, 201, 217
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	27, 42, 66
FokI	GGATG	4 cut(s)	140, 173, 223, 257
Fsp4HI	GCNGC	3 cut(s)	27, 42, 66
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	5 cut(s)	8, 150, 397, 430, 494
GluI	GCNGC	3 cut(s)	27, 42, 66
HaeII	RGCGCY	4 cut(s)	10, 399, 432, 496
HapII	CCGG	3 cut(s)	69, 242, 287
HgaI	GACGC	3 cut(s)	71, 178, 265
HhaI	GCGC	5 cut(s)	9, 151, 398, 431, 495
Hin1I	GRCGYC	4 cut(s)	63, 396, 429, 493
Hin6I	GCGC	5 cut(s)	7, 149, 396, 429, 493
HinP1I	GCGC	5 cut(s)	7, 149, 396, 429, 493
HpaII	CCGG	3 cut(s)	69, 242, 287
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	49, 419, 451, 483
Hpy99I	CGWCG	5 cut(s)	65, 114, 407, 440, 505
HpyAV	CCTTC	3 cut(s)	74, 442, 474
HpyCH4V	TGCA	1 cut(s)	203
Hsp92I	GRCGYC	4 cut(s)	63, 396, 429, 493
HspAI	GCGC	5 cut(s)	7, 149, 396, 429, 493
KasI	GGCGCC	3 cut(s)	395, 428, 492
Kzo9I	GATC	1 cut(s)	275
LpnPI	CCDG	3 cut(s)	82, 255, 300
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	306
Mly113I	GGCGCC	3 cut(s)	396, 429, 493
MseI	TTAA	1 cut(s)	252
MspI	CCGG	3 cut(s)	69, 242, 287
MspR9I	CCNGG	2 cut(s)	70, 242
MvnI	CGCG	2 cut(s)	151, 300
NarI	GGCGCC	3 cut(s)	396, 429, 493
NciI	CCSGG	2 cut(s)	70, 242
NdeII	GATC	1 cut(s)	275
NlaIV	GGNNCC	5 cut(s)	95, 397, 430, 462, 494
NmuCI	GTSAC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
Pfl23II	CGTACG	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	28, 43, 67
PluTI	GGCGCC	3 cut(s)	399, 432, 496
PspLI	CGTACG	1 cut(s)	295
PspN4I	GGNNCC	5 cut(s)	95, 397, 430, 462, 494
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	27, 42, 66
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	70, 242
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	3 cut(s)	85, 144, 466
SfoI	GGCGCC	3 cut(s)	397, 430, 494
SinI	GGWCC	1 cut(s)	134
SsiI	CCGC	4 cut(s)	27, 42, 66, 151
SspDI	GGCGCC	3 cut(s)	395, 428, 492
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	68, 240
TaqI	TCGA	8 cut(s)	60, 373, 391, 405, 424, 438, 456, 503
TauI	GCSGC	3 cut(s)	29, 44, 68
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	134
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.