Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009210.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2936 .. 3397

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggtgggagctacccctgacgggattccatttctgtcactgaggattggtagtgacgaaaatcctccccaccagcagctgaatgggcctatcccgagccccattggctacctaaacttgcctccagctgaagagacgcagaggctgaggcaggaactcgagcaatttcagaaggaaaagcgggaccacgacgacgccatcgacgatctccaccaaactaacaacgtagtagcaaacgcatgcgccagcggttttattaggggagtttctggtggacccctcatcgagggcttgggaggcacgtcgaatggggggcagaatggcggagccggattaggccaatccaaaagggtgctcaacgaatcgtggcgcgagaagatggaaaaaaatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.07

Weight (kDa)

5.0

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	181, 249, 324
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	21, 286
AjiI	CACGTC	1 cut(s)	303
AluBI	AGCT	3 cut(s)	11, 79, 128
AluI	AGCT	3 cut(s)	11, 79, 128
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	128
AlwNI	CAGNNNCTG	2 cut(s)	79, 145
Ama87I	CYCGRG	2 cut(s)	94, 158
AoxI	GGCC	2 cut(s)	86, 337
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	245, 372
AspS9I	GGNCC	3 cut(s)	86, 184, 275
AvaI	CYCGRG	2 cut(s)	94, 158
AvaII	GGWCC	2 cut(s)	184, 275
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	206, 373
BcoDI	GTCTC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	184, 275
BmeT110I	CYCGRG	2 cut(s)	94, 158
BmgBI	CACGTC	1 cut(s)	303
BmgT120I	GGNCC	3 cut(s)	86, 184, 275
BmiI	GGNNCC	3 cut(s)	185, 277, 328
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 286
BseLI	CCNNNNNNNGG	2 cut(s)	21, 286
BseMII	CTCAG	2 cut(s)	32, 137
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	88, 339
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	94, 158
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	21, 286
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	88, 339
BsoBI	CYCGRG	2 cut(s)	94, 158
Bsp1286I	GDGCHC	2 cut(s)	101, 357
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	3 cut(s)	181, 249, 324
BspANI	GGCC	2 cut(s)	88, 339
BspCNI	CTCAG	2 cut(s)	33, 138
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	185, 277, 328
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	241, 247
BstDEI	CTNAG	2 cut(s)	41, 146
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	245, 372
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 105, 297
BstNSI	RCATGY	1 cut(s)	243
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	88, 339
BtrI	CACGTC	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	241, 247
CaiI	CAGNNNCTG	2 cut(s)	79, 145
CfoI	GCGC	2 cut(s)	245, 372
Cfr13I	GGNCC	3 cut(s)	86, 184, 275
CseI	GACGC	2 cut(s)	145, 203
CviAII	CATG	1 cut(s)	240
DdeI	CTNAG	2 cut(s)	41, 146
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	184, 275
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	94, 158
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	243
FaiI	YATR	1 cut(s)	241
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	239
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	2 cut(s)	244, 371
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	88, 339
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	2 cut(s)	145, 203
HhaI	GCGC	2 cut(s)	245, 372
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	243
Hin6I	GCGC	2 cut(s)	243, 370
HinP1I	GCGC	2 cut(s)	243, 370
HinfI	GANTC	2 cut(s)	25, 362
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	4 cut(s)	194, 197, 206, 307
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	225, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 105, 297
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	2 cut(s)	225, 302
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	243
HspAI	GCGC	2 cut(s)	243, 370
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	8, 326
LpnPI	CCDG	7 cut(s)	30, 86, 137, 138, 255, 259, 343
Lsp1109I	GCAGC	1 cut(s)	88
MaeII	ACGT	2 cut(s)	225, 302
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	143, 388
MhlI	GDGCHC	2 cut(s)	101, 357
MluCI	AATT	1 cut(s)	164
MnlI	CCTC	8 cut(s)	36, 75, 132, 135, 141, 280, 290, 290
MspA1I	CMGCKG	3 cut(s)	79, 128, 249
MspI	CCGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	85, 105, 297
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	3 cut(s)	185, 277, 328
NmuCI	GTSAC	2 cut(s)	36, 53
NspI	RCATGY	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 201
PfeI	GAWTC	2 cut(s)	25, 362
PkrI	GCNGC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	185, 277, 328
PspPI	GGNCC	3 cut(s)	86, 184, 275
PspXI	VCTCGAGB	1 cut(s)	158
PstNI	CAGNNNCTG	2 cut(s)	79, 145
PvuII	CAGCTG	2 cut(s)	79, 128
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	3 cut(s)	86, 184, 275
SduI	GDGCHC	2 cut(s)	101, 357
SetI	ASST	6 cut(s)	13, 81, 114, 130, 228, 305
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	184, 275
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	3 cut(s)	181, 249, 324
TaiI	ACGT	2 cut(s)	228, 305
TaqI	TCGA	4 cut(s)	159, 201, 285, 305
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	25, 362
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	36, 53
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	2 cut(s)	36, 53
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	184, 275
XagI	CCTNNNNNAGG	1 cut(s)	284
XceI	RCATGY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.