Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001692.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

138302 .. 138895

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001692.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggcgggagctgcccataacgggattccatttatgtcactgaggactggtagtgacgaaattcctccccaccagccgccgaatgggtccatccctagccccattggcgacctgaacttgcctccagctgacgagacacagagattgaggcaggaactcgagcaatttcggaaggaaaaacgggacttcaaggctcgtcgtcgacgaaaacttgaaaggttcctacaacttgacagtgattcgttggacgatgacgccatcggcgatctccaccaaaccaacaacgtggtagcaaacgcaggccccagcggcgttatcgagggaatctttggcggacccctcgtcgaaggggtaggaggcacgtcgaatggagggcagaacggcggagccggtctagtccaatccaagagggcgcgcaacaaatcgtggtgcgagaagatggaaaagatgatcgatgcatgcaaacgtaccggcccacgagagttggcggcggaaatcgcaagggacttcagtaagtctccgtttaccgacgatattctgaatgcggcaaagccccgtaggtttaccacgcctgtattccacaaatacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

8.58

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AccII	CGCG	1 cut(s)	415
AciI	CCGC	8 cut(s)	5, 77, 309, 333, 384, 488, 491, 545
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	21, 83
AgsI	TTSAA	2 cut(s)	190, 215
AhdI	GACNNNNNGTC	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	363
AluBI	AGCT	2 cut(s)	11, 128
AluI	AGCT	2 cut(s)	11, 128
Alw26I	GTCTC	2 cut(s)	128, 522
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	301, 472
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	415, 417
AspS9I	GGNCC	4 cut(s)	87, 302, 335, 473
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	87, 335
BauI	CACGAG	1 cut(s)	477
BccI	CCATC	3 cut(s)	98, 266, 433
BceAI	ACGGC	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	128, 522
BfaI	CTAG	2 cut(s)	96, 395
BglI	GCCNNNNNGGC	2 cut(s)	105, 309
BisI	GCNGC	5 cut(s)	12, 77, 310, 489, 546
BlsI	GCNGC	5 cut(s)	13, 78, 311, 490, 547
Bme18I	GGWCC	2 cut(s)	87, 335
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	363
BmgT120I	GGNCC	4 cut(s)	87, 302, 335, 473
BmiI	GGNNCC	5 cut(s)	88, 221, 304, 337, 388
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 83
Bse118I	RCCGGY	2 cut(s)	389, 470
Bse1I	ACTGG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	453
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	21, 83
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	52
BsePI	GCGCGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	303, 474
BshVI	ATCGAT	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	390, 471
BslFI	GGGAC	2 cut(s)	197, 518
BslI	CCNNNNNNNGG	2 cut(s)	21, 83
BsmAI	GTCTC	2 cut(s)	128, 522
BsmFI	GGGAC	2 cut(s)	197, 518
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	303, 474
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	265, 450
BspACI	CCGC	8 cut(s)	5, 77, 309, 333, 384, 488, 491, 545
BspANI	GGCC	2 cut(s)	303, 474
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	5 cut(s)	88, 221, 304, 337, 388
BsrFI	RCCGGY	2 cut(s)	389, 470
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	2 cut(s)	389, 470
BssHII	GCGCGC	1 cut(s)	413
BssMI	GATC	2 cut(s)	265, 450
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	477
Bst2BI	CACGAG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	301, 415, 460
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	415, 417
BstKTI	GATC	2 cut(s)	268, 453
BstMAI	GTCTC	2 cut(s)	128, 522
BstMBI	GATC	2 cut(s)	265, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 105, 309, 497
BstNSI	RCATGY	1 cut(s)	462
BstUI	CGCG	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	303, 474
BsuTUI	ATCGAT	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	38, 241
Cac8I	GCNNGC	3 cut(s)	301, 415, 460
CfoI	GCGC	2 cut(s)	415, 417
Cfr10I	RCCGGY	2 cut(s)	389, 470
Cfr13I	GGNCC	4 cut(s)	87, 302, 335, 473
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	468
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	1 cut(s)	459
CviJI	RGCY	9 cut(s)	11, 76, 99, 128, 194, 303, 389, 474, 553
CviKI_1	RGCY	9 cut(s)	11, 76, 99, 128, 194, 303, 389, 474, 553
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	267, 452
DpnII	GATC	2 cut(s)	265, 450
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EciI	GGCGGA	3 cut(s)	348, 399, 506
Eco47I	GGWCC	2 cut(s)	87, 335
Eco57I	CTGAAG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	1 cut(s)	462
FaiI	YATR	3 cut(s)	18, 35, 460
FaqI	GGGAC	2 cut(s)	197, 518
FatI	CATG	1 cut(s)	458
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	12, 77, 310, 489, 546
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	5 cut(s)	12, 77, 310, 489, 546
FspBI	CTAG	2 cut(s)	96, 395
GlaI	GCGC	2 cut(s)	414, 416
GluI	GCNGC	5 cut(s)	12, 77, 310, 489, 546
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	303, 474
HapII	CCGG	2 cut(s)	390, 471
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	415, 417
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	2 cut(s)	413, 415
HinP1I	GCGC	2 cut(s)	413, 415
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	25, 239, 324
HpaII	CCGG	2 cut(s)	390, 471
Hpy166II	GTNNAC	3 cut(s)	203, 525, 564
Hpy188I	TCNGA	2 cut(s)	171, 540
Hpy8I	GTNNAC	3 cut(s)	203, 525, 564
Hpy99I	CGWCG	6 cut(s)	201, 204, 207, 347, 367, 533
HpyAV	CCTTC	2 cut(s)	166, 341
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	3 cut(s)	285, 362, 466
HpyCH4V	TGCA	2 cut(s)	458, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 105, 309, 497
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	3 cut(s)	285, 362, 466
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	2 cut(s)	413, 415
Kzo9I	GATC	2 cut(s)	265, 450
LmnI	GCTCC	2 cut(s)	8, 386
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	96, 395
MaeII	ACGT	3 cut(s)	285, 362, 466
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	2 cut(s)	267, 452
MboI	GATC	2 cut(s)	265, 450
MboII	GAAGA	1 cut(s)	448
MluCI	AATT	2 cut(s)	60, 164
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	36, 75, 132, 141, 313, 350, 350, 365, 402
Mph1103I	ATGCAT	1 cut(s)	460
MspA1I	CMGCKG	2 cut(s)	128, 309
MspI	CCGG	2 cut(s)	390, 471
Mva1269I	GAATGC	1 cut(s)	547
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	4 cut(s)	11, 105, 309, 497
NdeII	GATC	2 cut(s)	265, 450
NlaIII	CATG	1 cut(s)	462
NlaIV	GGNNCC	5 cut(s)	88, 221, 304, 337, 388
NmuCI	GTSAC	2 cut(s)	36, 53
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	158
PauI	GCGCGC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	202, 261
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	3 cut(s)	25, 239, 324
PkrI	GCNGC	5 cut(s)	13, 78, 311, 490, 547
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	5 cut(s)	88, 221, 304, 337, 388
PspPI	GGNCC	4 cut(s)	87, 302, 335, 473
PspXI	VCTCGAGB	1 cut(s)	158
PteI	GCGCGC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	201
SatI	GCNGC	5 cut(s)	12, 77, 310, 489, 546
Sau3AI	GATC	2 cut(s)	265, 450
Sau96I	GGNCC	4 cut(s)	87, 302, 335, 473
SetI	ASST	8 cut(s)	13, 114, 130, 221, 288, 365, 469, 563
SfaNI	GCATC	1 cut(s)	445
Sfr274I	CTCGAG	1 cut(s)	158
SgrDI	CGTCGACG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	87, 335
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	2 cut(s)	60, 164
SsiI	CCGC	8 cut(s)	5, 77, 309, 333, 384, 488, 491, 545
SspMI	CTAG	2 cut(s)	96, 395
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	3 cut(s)	288, 365, 469
TaqI	TCGA	6 cut(s)	159, 202, 318, 345, 365, 453
TasI	AATT	2 cut(s)	60, 164
TauI	GCSGC	4 cut(s)	79, 312, 491, 548
TfiI	GAWTC	3 cut(s)	25, 239, 324
TscAI	CASTG	2 cut(s)	45, 241
TseFI	GTSAC	2 cut(s)	36, 53
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	36, 53
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	45, 241
VpaK11BI	GGWCC	2 cut(s)	87, 335
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	2 cut(s)	96, 395
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.