Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

18300195 .. 18303499

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGGCACTTCAGTCCTAAGCAGCCCGTGTCACACATCTTCGCAGCAAAGGTGTGCCTACGTGCGAGTTTTTTCGCAACAACAGTTGGCGCCATCTATGAGAAAAAACTTCCCAAAACTAACATGGTGGGAGTGGAGGATTCCGAACCATATTCATCTAACAAGACTGGATCGGATAGATCACAAAACAACCAACATGACAACATGCTCGAGCAGATCAAGAAGATGGAAGAAGAACCCAGAGATGCCCGCAAACAGAAGCACAAGGAAAGTGAACCAGACCAGATCGAAGATTCAAACGACGGGGAAGCAGAGGAAAAGGTCGCCGTGAAGTCGACTCGTGGAGGTGCTGAAAATTCAACAGGAGGGACCTCGGGTTCTATCTTAGAAAATGACAAAATTAATTCCAAAAATGTAAAGGACAAGAGTTGTCGATCCCAGATAGAGAGGATGATAGGGAAATGCAAGTTCTGGAGATCTGGCTGCGACCGCTGCAAGAAAAATAAGAAAATCTCATTCATAGAGGAGATTCTCAACATAGAACAATCACGCAAGTTCGTGAAGGCCATCTTCCAGCAATACAACAGAGCTACCAATCTGGTGGATCACCTTAGGGGGTTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.68

Weight (kDa)

9.21

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	335
AciI	CCGC	2 cut(s)	250, 490
AclWI	GGATC	3 cut(s)	178, 429, 612
AcsI	RAATTY	1 cut(s)	355
AcyI	GRCGYC	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	297, 360
AloI	GAACNNNNNNTCC	2 cut(s)	361, 393
AluBI	AGCT	1 cut(s)	590
AluI	AGCT	1 cut(s)	590
AlwI	GGATC	3 cut(s)	178, 429, 612
Ama87I	CYCGRG	2 cut(s)	209, 373
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	4 cut(s)	22, 44, 483, 492
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	599
AvaI	CYCGRG	2 cut(s)	209, 373
AvaII	GGWCC	1 cut(s)	369
AxyI	CCTNAGG	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	34, 56, 470, 479
BccI	CCATC	3 cut(s)	101, 220, 575
BceAI	ACGGC	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	93
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	4 cut(s)	23, 45, 484, 493
BlsI	GCNGC	4 cut(s)	24, 46, 485, 494
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	2 cut(s)	209, 373
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	91, 370
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	34, 56, 470, 479
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	209, 373
BslFI	GGGAC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	2 cut(s)	209, 373
Bsp143I	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
BspACI	CCGC	2 cut(s)	250, 490
BspANI	GGCC	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	91, 370
BspPI	GGATC	3 cut(s)	178, 429, 612
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	18, 385, 611
BstF5I	GGATG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	7 cut(s)	173, 182, 219, 288, 437, 479, 607
BstMBI	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 492
BstNSI	RCATGY	1 cut(s)	208
BstV1I	GCAGC	4 cut(s)	34, 56, 470, 479
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	611
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	369
CviAII	CATG	3 cut(s)	124, 197, 205
CviJI	RGCY	4 cut(s)	25, 483, 566, 590
CviKI_1	RGCY	4 cut(s)	25, 483, 566, 590
DdeI	CTNAG	3 cut(s)	18, 385, 611
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	7 cut(s)	172, 181, 218, 287, 436, 478, 606
DpnII	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
Eco47I	GGWCC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	611
Eco88I	CYCGRG	2 cut(s)	209, 373
EcoO109I	RGGNCCY	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	3 cut(s)	127, 200, 208
FaiI	YATR	9 cut(s)	99, 125, 151, 198, 206, 521, 539, 623, 625
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	123, 196, 204
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	4 cut(s)	23, 45, 484, 493
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	4 cut(s)	23, 45, 484, 493
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	4 cut(s)	23, 45, 484, 493
GsuI	CTGGAG	1 cut(s)	493
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	566
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	127, 200, 208
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	140, 293, 337, 529
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	275, 336
Hpy188I	TCNGA	2 cut(s)	145, 175
Hpy188III	TCNNGA	3 cut(s)	220, 472, 559
Hpy8I	GTNNAC	2 cut(s)	275, 336
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	465, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 492
HpyF3I	CTNAG	3 cut(s)	18, 385, 611
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	127, 200, 208
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
Lsp1109I	GCAGC	4 cut(s)	34, 56, 470, 479
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	7 cut(s)	172, 181, 218, 287, 436, 478, 606
MboI	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
MboII	GAAGA	6 cut(s)	31, 235, 242, 245, 302, 562
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	3 cut(s)	355, 399, 403
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	7 cut(s)	130, 307, 338, 359, 382, 441, 517
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	489, 492
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
NlaIII	CATG	3 cut(s)	127, 200, 208
NlaIV	GGNNCC	2 cut(s)	91, 370
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	140, 293, 529
PkrI	GCNGC	4 cut(s)	24, 46, 485, 494
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	91, 370
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PspXI	VCTCGAGB	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	23, 45, 484, 493
Sau3AI	GATC	7 cut(s)	170, 179, 216, 285, 434, 476, 604
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	331
SetI	ASST	7 cut(s)	54, 64, 324, 349, 374, 592, 612
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	355, 399, 403
SsiI	CCGC	2 cut(s)	250, 490
SspDI	GGCGCC	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	4 cut(s)	210, 288, 335, 433
TasI	AATT	3 cut(s)	355, 399, 403
TfiI	GAWTC	3 cut(s)	140, 293, 529
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	4 cut(s)	22, 44, 483, 492
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	144, 508
VpaK11BI	GGWCC	1 cut(s)	369
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.