Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000588.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

31241 .. 31624

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000588.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggttccacgacctgaaacccgggtccattttggacaattgagggagtctttcatctctcaacacttttgcaacagaaaaagcatgaaggacatggcggccttgttcatggtgaagcaaaaagtgggagagaaactcaagagtttctacgaccattttcggggggagcagacacaaacagaatcatgcaattctgaatacgcgacggtggcatttcgtgagggactcctacccaactcacagatatataaagatctagtgagaaagccagccaaggatatgagcgagatccagacacggatagaaggagaaattagacttaaagaaatcgaagcagcacaggccgcaagaaggattagtcaagactcaagcagaatagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

127

Amino Acids

14.79

Weight (kDa)

9.2

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	98, 345
AclWI	GGATC	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	160, 351
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	2 cut(s)	99, 342
ApeKI	GCWGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	2 cut(s)	22, 23
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	347
BcnI	CCSGG	2 cut(s)	22, 23
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	99, 336, 345
BlsI	GCNGC	3 cut(s)	100, 337, 346
Bme1390I	CCNGG	2 cut(s)	22, 23
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	6, 26
BmrFI	CCNGG	2 cut(s)	22, 23
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpuEI	CTTGAG	2 cut(s)	122, 352
BpuMI	CCSGG	2 cut(s)	22, 23
BsaJI	CCNNGG	2 cut(s)	21, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 351
BseDI	CCNNGG	2 cut(s)	21, 273
BseLI	CCNNNNNNNGG	2 cut(s)	160, 351
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	101, 344
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	160, 351
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	101, 344
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	253, 288
BspACI	CCGC	2 cut(s)	98, 345
BspANI	GGCC	2 cut(s)	101, 344
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	6, 26
BspPI	GGATC	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	21, 273
BssMI	GATC	2 cut(s)	253, 288
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	256, 291
BstMBI	GATC	2 cut(s)	253, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 341, 344
BstSCI	CCNGG	2 cut(s)	20, 21
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	253, 288
BstYI	RGATCY	2 cut(s)	253, 288
BsuRI	GGCC	2 cut(s)	101, 344
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	25
Cfr9I	CCCGGG	1 cut(s)	21
CviAII	CATG	4 cut(s)	85, 94, 109, 186
CviJI	RGCY	4 cut(s)	101, 268, 272, 344
CviKI_1	RGCY	4 cut(s)	101, 268, 272, 344
DpnI	GATC	2 cut(s)	255, 290
DpnII	GATC	2 cut(s)	253, 288
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	88, 97, 112, 189
FaiI	YATR	7 cut(s)	86, 95, 110, 187, 247, 249, 281
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	4 cut(s)	84, 93, 108, 185
Fnu4HI	GCNGC	3 cut(s)	99, 336, 345
Fsp4HI	GCNGC	3 cut(s)	99, 336, 345
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	3 cut(s)	99, 336, 345
HaeIII	GGCC	2 cut(s)	101, 344
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	4 cut(s)	88, 97, 112, 189
HinfI	GANTC	4 cut(s)	47, 182, 225, 365
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	139, 218, 292, 362
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	82, 299, 345
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	72, 189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 341, 344
Hsp92II	CATG	4 cut(s)	88, 97, 112, 189
Kzo9I	GATC	2 cut(s)	253, 288
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	27, 35, 282, 305, 326
Lsp1109I	GCAGC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	257
MalI	GATC	2 cut(s)	255, 290
MboI	GATC	2 cut(s)	253, 288
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	2 cut(s)	253, 288
MluCI	AATT	3 cut(s)	38, 190, 312
MlyI	GAGTC	3 cut(s)	56, 219, 359
MnlI	CCTC	2 cut(s)	36, 214
MseI	TTAA	1 cut(s)	321
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 23
MunI	CAATTG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	209, 341, 344
NciI	CCSGG	2 cut(s)	22, 23
NdeII	GATC	2 cut(s)	253, 288
NlaIII	CATG	4 cut(s)	88, 97, 112, 189
NlaIV	GGNNCC	2 cut(s)	6, 26
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	100, 337, 346
PleI	GAGTC	3 cut(s)	55, 219, 359
PpsI	GAGTC	3 cut(s)	55, 219, 359
PspN4I	GGNNCC	2 cut(s)	6, 26
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	253, 288
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	99, 336, 345
Sau3AI	GATC	2 cut(s)	253, 288
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	3 cut(s)	56, 219, 359
ScrFI	CCNGG	2 cut(s)	22, 23
SetI	ASST	1 cut(s)	16
SinI	GGWCC	1 cut(s)	25
SmaI	CCCGGG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	137, 367
SmoI	CTYRAG	2 cut(s)	137, 367
Sse9I	AATT	3 cut(s)	38, 190, 312
SsiI	CCGC	2 cut(s)	98, 345
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	20, 21
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	38, 190, 312
TauI	GCSGC	2 cut(s)	101, 347
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	43, 97, 101
TspGWI	ACGGA	1 cut(s)	313
TspMI	CCCGGG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	25
XmaI	CCCGGG	1 cut(s)	21
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.