Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008518.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

17621 .. 18058

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008518.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggcggccatgttcactgtgaagaaaaaatcaggagagaaactcaagatgttctacgaccgttttcgggtggagcaaacacaaacagaaggatacacgtccgaatacgcggctatggcatttcgcgagggacttctccccaactcgcagatatataaagatctagtgagaaaggcaaccaaggatatgagcgagatccagacaaggatagaaggagaaatcagacttgaagaaatcgaagcaacacaggttgcaagaagcaccgcggtaattgcatcaagggagcaagaaaaatcggtcgaggctcgagcggaacagaataaggcctgggaccaaaactggaggcggggacaaatcccgattgggcgaggctttcaagagaggcaggccaaattcacaatttctccaacagcaatccttctcgcgcacaagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

145

Amino Acids

16.76

Weight (kDa)

9.52

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	311
AccII	CGCG	4 cut(s)	110, 126, 266, 425
AciI	CCGC	6 cut(s)	5, 110, 264, 266, 311, 346
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	230, 377
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	326
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	3 cut(s)	6, 324, 387
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	164, 436
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	2 cut(s)	6, 111
BlsI	GCNGC	2 cut(s)	7, 112
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BpmI	CTGGAG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	180, 264, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	3 cut(s)	180, 264, 327
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	344
Bsh1236I	CGCG	4 cut(s)	110, 126, 266, 425
Bsh1285I	CGRYCG	2 cut(s)	61, 300
BshFI	GGCC	3 cut(s)	8, 326, 389
BsiEI	CGRYCG	2 cut(s)	61, 300
BsiHKCI	CYCGRG	1 cut(s)	306
BslFI	GGGAC	3 cut(s)	144, 344, 363
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	3 cut(s)	144, 344, 363
BsnI	GGCC	3 cut(s)	8, 326, 389
BsoBI	CYCGRG	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	160, 195
Bsp68I	TCGCGA	1 cut(s)	126
BspACI	CCGC	6 cut(s)	5, 110, 264, 266, 311, 346
BspANI	GGCC	3 cut(s)	8, 326, 389
BspFNI	CGCG	4 cut(s)	110, 126, 266, 425
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	180, 264, 327
BssMI	GATC	2 cut(s)	160, 195
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	19, 62
BstC8I	GCNNGC	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	4 cut(s)	110, 126, 266, 425
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	163, 198
BstMBI	GATC	2 cut(s)	160, 195
BstMCI	CGRYCG	2 cut(s)	61, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 272
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstUI	CGCG	4 cut(s)	110, 126, 266, 425
BstX2I	RGATCY	2 cut(s)	160, 195
BstYI	RGATCY	2 cut(s)	160, 195
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	8, 326, 389
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	15
BtuMI	TCGCGA	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	331
Cfr42I	CCGCGG	1 cut(s)	267
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	6 cut(s)	8, 113, 305, 326, 372, 389
CviKI_1	RGCY	6 cut(s)	8, 113, 305, 326, 372, 389
DpnI	GATC	2 cut(s)	162, 197
DpnII	GATC	2 cut(s)	160, 195
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 116, 154, 156, 188
FaqI	GGGAC	3 cut(s)	144, 344, 363
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	6, 111
Fsp4HI	GCNGC	2 cut(s)	6, 111
FspBI	CTAG	2 cut(s)	164, 436
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	6, 111
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	8, 326, 389
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	103, 224
Hpy188III	TCNNGA	6 cut(s)	33, 46, 125, 199, 358, 377
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	83, 206, 428
HpyCH4III	ACNGT	2 cut(s)	19, 62
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	254, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 272
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	425
KspI	CCGCGG	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	160, 195
LmnI	GCTCC	2 cut(s)	73, 283
LpnPI	CCDG	7 cut(s)	18, 212, 233, 313, 325, 340, 371
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	164, 436
MaeII	ACGT	1 cut(s)	98
MalI	GATC	2 cut(s)	162, 197
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	2 cut(s)	160, 195
MboII	GAAGA	2 cut(s)	34, 242
MflI	RGATCY	2 cut(s)	160, 195
MluCI	AATT	3 cut(s)	270, 392, 399
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	5 cut(s)	121, 295, 336, 362, 375
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	4 cut(s)	110, 126, 266, 425
MwoI	GCNNNNNNNGC	2 cut(s)	116, 272
NdeII	GATC	2 cut(s)	160, 195
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	332
NruI	TCGCGA	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	7, 112
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	331
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	160, 195
RruI	TCGCGA	1 cut(s)	126
SacII	CCGCGG	1 cut(s)	267
SatI	GCNGC	2 cut(s)	6, 111
Sau3AI	GATC	2 cut(s)	160, 195
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	2 cut(s)	101, 252
SfaNI	GCATC	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	267
SgrBI	CCGCGG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	331
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	44, 306
SmoI	CTYRAG	2 cut(s)	44, 306
Sse9I	AATT	3 cut(s)	270, 392, 399
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	6 cut(s)	5, 110, 264, 266, 311, 346
SspMI	CTAG	2 cut(s)	164, 436
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	19, 62
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	237, 300, 307
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	270, 392, 399
TauI	GCSGC	2 cut(s)	8, 113
TscAI	CASTG	1 cut(s)	22
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	306
XspI	CTAG	2 cut(s)	164, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.