Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002161.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

124399 .. 127097

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002161.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcttcggccatcgcacagcaggtgcgagactagtagtcaattcctccacattgatgaaaaagatcatgctaattttggtggcgacgagccagaccagtgttcctttcaactcaggcttgctgagctagggcatcacaattctcaccacatgggccttggccatgtggagctggattacgtgctccttggcctcttgggccttggccacctgactgacggtcatgtggattattttccttctgccaatcatatcttgcttcaggcatggagcaatgggagaatgcatccggtgaatcatcgagtcatgatgtgtggagaaaatgaaagatattctctaggagcatttgcagttccagtagagggtaccatcatcaaggcaccaaaggagttggagatgaagaacttgcccaaattctcaaggactaactatatggaatttctaatttctcctactcagccgatggaagggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

5.96

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	12
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	365, 379
AcoI	YGGCCR	3 cut(s)	8, 160, 205
AcsI	RAATTY	2 cut(s)	413, 437
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	362, 467
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	2 cut(s)	36, 219
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	2 cut(s)	127, 172
AluI	AGCT	2 cut(s)	127, 172
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	6 cut(s)	8, 154, 160, 190, 199, 205
ApoI	RAATTY	2 cut(s)	413, 437
Asp718I	GGTACC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	154, 199
AsuHPI	GGTGA	2 cut(s)	137, 304
BalI	TGGCCA	2 cut(s)	162, 207
BanI	GGYRCC	2 cut(s)	365, 379
Bbv12I	GWGCWC	1 cut(s)	186
BccI	CCATC	3 cut(s)	19, 377, 457
BcoDI	GTCTC	1 cut(s)	23
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	3 cut(s)	33, 128, 338
BfuAI	ACCTGC	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	198
BlpI	GCTNAGC	1 cut(s)	123
BmeRI	GACNNNNNGTC	2 cut(s)	36, 219
BmgT120I	GGNCC	2 cut(s)	154, 199
BmiI	GGNNCC	2 cut(s)	367, 381
BmsI	GCATC	2 cut(s)	142, 295
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	403
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	157, 187, 202
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 467
Bse1I	ACTGG	2 cut(s)	97, 356
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	157, 187, 202
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	362, 467
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	114, 127, 470
BseNI	ACTGG	2 cut(s)	97, 356
BshFI	GGCC	6 cut(s)	10, 156, 162, 192, 201, 207
BshNI	GGYRCC	2 cut(s)	365, 379
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	362, 467
BsmAI	GTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	6 cut(s)	10, 156, 162, 192, 201, 207
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	64
Bsp1720I	GCTNAGC	1 cut(s)	123
BspANI	GGCC	6 cut(s)	10, 156, 162, 192, 201, 207
BspCNI	CTCAG	3 cut(s)	115, 126, 469
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	367, 381
BspMI	ACCTGC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	365, 379
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	97, 356
BssECI	CCNNGG	3 cut(s)	157, 187, 202
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	3 cut(s)	157, 187, 202
Bst4CI	ACNGT	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	113, 123, 456
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 198
BsuRI	GGCC	6 cut(s)	10, 156, 162, 192, 201, 207
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	154, 199
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	6 cut(s)	68, 151, 164, 224, 267, 307
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	3 cut(s)	113, 123, 456
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DriI	GACNNNNNGTC	2 cut(s)	36, 219
EaeI	YGGCCR	3 cut(s)	8, 160, 205
Eam1105I	GACNNNNNGTC	2 cut(s)	36, 219
Eco130I	CCWWGG	3 cut(s)	157, 187, 202
Eco57I	CTGAAG	1 cut(s)	245
EcoT14I	CCWWGG	3 cut(s)	157, 187, 202
EcoT22I	ATGCAT	1 cut(s)	288
ErhI	CCWWGG	3 cut(s)	157, 187, 202
FaeI	CATG	6 cut(s)	71, 154, 167, 227, 270, 310
FatI	CATG	6 cut(s)	67, 150, 163, 223, 266, 306
FokI	GGATG	1 cut(s)	273
FspBI	CTAG	3 cut(s)	33, 128, 338
HaeIII	GGCC	6 cut(s)	10, 156, 162, 192, 201, 207
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	6 cut(s)	71, 154, 167, 227, 270, 310
HinfI	GANTC	2 cut(s)	295, 303
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	137, 304
Hpy188III	TCNNGA	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	249, 461
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	286, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 198
HpyF3I	CTNAG	3 cut(s)	113, 123, 456
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	6 cut(s)	71, 154, 167, 227, 270, 310
KpnI	GGTACC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	4 cut(s)	169, 189, 270, 341
LpnPI	CCDG	9 cut(s)	7, 100, 105, 110, 158, 224, 248, 303, 369
LweI	GCATC	2 cut(s)	142, 295
MaeI	CTAG	3 cut(s)	33, 128, 338
MaeII	ACGT	1 cut(s)	180
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	2 cut(s)	162, 207
MluCI	AATT	6 cut(s)	41, 73, 139, 413, 437, 444
MluNI	TGGCCA	2 cut(s)	162, 207
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	3 cut(s)	56, 203, 355
Mox20I	TGGCCA	2 cut(s)	162, 207
Mph1103I	ATGCAT	1 cut(s)	288
MscI	TGGCCA	2 cut(s)	162, 207
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	2 cut(s)	162, 207
MspI	CCGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	124, 198
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	6 cut(s)	71, 154, 167, 227, 270, 310
NlaIV	GGNNCC	2 cut(s)	367, 381
NsiI	ATGCAT	1 cut(s)	288
PagI	TCATGA	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	367, 381
PspPI	GGNCC	2 cut(s)	154, 199
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	154, 199
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	26, 129, 174, 183, 213
SfaNI	GCATC	2 cut(s)	142, 295
SfiI	GGCCNNNNNGGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	6 cut(s)	41, 73, 139, 413, 437, 444
SspMI	CTAG	3 cut(s)	33, 128, 338
StyI	CCWWGG	3 cut(s)	157, 187, 202
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	301
TasI	AATT	6 cut(s)	41, 73, 139, 413, 437, 444
TfiI	GAWTC	1 cut(s)	295
TscAI	CASTG	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	72, 339, 413
TspRI	CASTG	1 cut(s)	104
XapI	RAATTY	2 cut(s)	413, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XspI	CTAG	3 cut(s)	33, 128, 338
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.