Rroxscaffold_5G00373860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002265
Physical Location & Seq
Reverse (-)
54942122 .. 54942364
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373860.1

Sequence Viewer

Length: 243 bp
ATGGAAAAAATGATTGATGCATGCAAGCGTGCGGCCCACCGAATCGGCGCGGAAATCGCAGAGACGTCGTCTCAAGAGGCGGCGTCAACATGGTTCCAAGACCTCAAGTCGCATTCCATACCGGATTTCGACACATTGAGCGGTGCTTTCGTTGGGCGAGGCCGAGGCCGGGCTAGCGACGGCGCTTGCCAAACCAACAGAGTGACCAATGTTGGCGCCGGCCACGCCACGGCAAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.42

Weight (kDa)

7.86

Isoelectric Point (pI)

20.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 32, 50, 80, 141
AcoI YGGCCR 1 cut(s) 220
AcyI GRCGYC 3 cut(s) 65, 83, 216
AfiI CCNNNNNNNGG 2 cut(s) 169, 229
AhdI GACNNNNNGTC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 56, 75
AoxI GGCC 4 cut(s) 33, 160, 166, 220
AspLEI GCGC 3 cut(s) 50, 185, 218
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 170
AsuNHI GCTAGC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 56, 75
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 2 cut(s) 186, 219
BisI GCNGC 2 cut(s) 33, 81
BlsI GCNGC 2 cut(s) 34, 82
Bme1390I CCNGG 1 cut(s) 170
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 95, 217
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 57, 89
BpuMI CCSGG 1 cut(s) 170
BsaHI GRCGYC 3 cut(s) 65, 83, 216
BsaJI CCNNGG 2 cut(s) 163, 228
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 229
Bse118I RCCGGY 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 163, 228
BseLI CCNNNNNNNGG 2 cut(s) 169, 229
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 4 cut(s) 35, 162, 168, 222
BshNI GGYRCC 1 cut(s) 215
BsiSI CCGG 3 cut(s) 122, 169, 219
BslI CCNNNNNNNGG 2 cut(s) 169, 229
BsmAI GTCTC 2 cut(s) 56, 75
BsmBI CGTCTC 2 cut(s) 56, 75
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 4 cut(s) 35, 162, 168, 222
BspACI CCGC 4 cut(s) 32, 50, 80, 141
BspANI GGCC 4 cut(s) 35, 162, 168, 222
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 95, 217
BspOI GCTAGC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 163, 228
BssNI GRCGYC 3 cut(s) 65, 83, 216
BstACI GRCGYC 3 cut(s) 65, 83, 216
BstC8I GCNNGC 6 cut(s) 22, 26, 30, 175, 187, 220
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 186, 219
BstHHI GCGC 3 cut(s) 50, 185, 218
BstMAI GTCTC 2 cut(s) 56, 75
BstMWI GCNNNNNNNGC 3 cut(s) 56, 174, 224
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 50
BsuRI GGCC 4 cut(s) 35, 162, 168, 222
BtgI CCRYGG 1 cut(s) 228
Cac8I GCNNGC 6 cut(s) 22, 26, 30, 175, 187, 220
CfoI GCGC 3 cut(s) 50, 185, 218
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 72
CviAII CATG 2 cut(s) 21, 90
CviJI RGCY 6 cut(s) 35, 162, 168, 173, 222, 239
CviKI_1 RGCY 6 cut(s) 35, 162, 168, 173, 222, 239
DinI GGCGCC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 220
Eam1105I GACNNNNNGTC 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
Esp3I CGTCTC 2 cut(s) 56, 75
FaeI CATG 2 cut(s) 24, 93
FaiI YATR 3 cut(s) 22, 91, 119
FatI CATG 2 cut(s) 20, 89
Fnu4HI GCNGC 2 cut(s) 33, 81
Fsp4HI GCNGC 2 cut(s) 33, 81
FspBI CTAG 1 cut(s) 174
GlaI GCGC 3 cut(s) 49, 184, 217
GluI GCNGC 2 cut(s) 33, 81
HaeII RGCGCY 2 cut(s) 186, 219
HaeIII GGCC 4 cut(s) 35, 162, 168, 222
HapII CCGG 3 cut(s) 122, 169, 219
HgaI GACGC 1 cut(s) 72
HhaI GCGC 3 cut(s) 50, 185, 218
Hin1I GRCGYC 3 cut(s) 65, 83, 216
Hin1II CATG 2 cut(s) 24, 93
Hin6I GCGC 3 cut(s) 48, 183, 216
HinP1I GCGC 3 cut(s) 48, 183, 216
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 42
HpaII CCGG 3 cut(s) 122, 169, 219
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 2 cut(s) 70, 182
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 20, 24
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 174, 224
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 3 cut(s) 65, 83, 216
Hsp92II CATG 2 cut(s) 24, 93
HspAI GCGC 3 cut(s) 48, 183, 216
KasI GGCGCC 1 cut(s) 215
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 135, 182, 232
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 202
MbiI CCGCTC 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 216
MnlI CCTC 4 cut(s) 70, 113, 152, 158
Mph1103I ATGCAT 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 241
MspI CCGG 3 cut(s) 122, 169, 219
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 112
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 56, 174, 224
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 170
NgoMIV GCCGGC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 24, 93
NlaIV GGNNCC 2 cut(s) 95, 217
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PctI GAATGC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 34, 82
PluTI GGCGCC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 95, 217
PspPI GGNCC 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 2 cut(s) 33, 81
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 170
SetI ASST 2 cut(s) 68, 105
SfaNI GCATC 1 cut(s) 7
SfoI GGCGCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 72, 104
SmoI CTYRAG 2 cut(s) 72, 104
SphI GCATGC 1 cut(s) 24
SsiI CCGC 4 cut(s) 32, 50, 80, 141
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 129
TauI GCSGC 2 cut(s) 35, 83
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
Tth111I GACNNNGTC 1 cut(s) 67
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 174
ZraI GACGTC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.