Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005710.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

55908 .. 56291

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005710.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcgggagctgcccctgacgggattccatttctgttactgaggactggtagtgacaaaattcctccccaccagccaccgaacgggtccatcccgagtcccatcggcgacctgaacttgcctccggctgacgaaatgcaaaggctaaggcaggaactcgagcaatttaggagggaaaagcaggaccgcgaggcttacgatgaagccgccggcgatctccatcaaactaacaacgtagtagcaaacgcaggcgccagcggcgttataggaggaatctctggtggacccctcgtcgagggggtgggaggtacgtcaaatggggggcagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.38

Weight (kDa)

4.66

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	5, 187, 207, 258
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	3 cut(s)	21, 83, 295
AhdI	GACNNNNNGTC	1 cut(s)	290
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	94, 158
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	87, 184, 284
AvaI	CYCGRG	2 cut(s)	94, 158
AvaII	GGWCC	3 cut(s)	87, 184, 284
BanI	GGYRCC	1 cut(s)	251
BccI	CCATC	3 cut(s)	98, 110, 228
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	3 cut(s)	12, 207, 259
BlsI	GCNGC	3 cut(s)	13, 208, 260
Bme18I	GGWCC	3 cut(s)	87, 184, 284
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmeT110I	CYCGRG	2 cut(s)	94, 158
BmgT120I	GGNCC	3 cut(s)	87, 184, 284
BmiI	GGNNCC	3 cut(s)	88, 253, 286
Bpu10I	CCTNAGC	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 83, 295
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	219
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	21, 83, 295
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	251
BsiHKCI	CYCGRG	2 cut(s)	94, 158
BsiSI	CCGG	2 cut(s)	125, 210
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	21, 83, 295
BsmFI	GGGAC	1 cut(s)	84
BsoBI	CYCGRG	2 cut(s)	94, 158
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	4 cut(s)	5, 187, 207, 258
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	88, 253, 286
BspT107I	GGYRCC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	211, 250, 256
BstDEI	CTNAG	2 cut(s)	41, 146
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 258
BstUI	CGCG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	211, 250, 256
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	87, 184, 284
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	6 cut(s)	11, 76, 128, 145, 194, 206
CviKI_1	RGCY	6 cut(s)	11, 76, 128, 145, 194, 206
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	41, 146
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	290
Eco47I	GGWCC	3 cut(s)	87, 184, 284
Eco88I	CYCGRG	2 cut(s)	94, 158
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaiI	YATR	1 cut(s)	266
FaqI	GGGAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	12, 207, 259
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	12, 207, 259
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	12, 207, 259
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	2 cut(s)	125, 210
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	25, 97, 273
HpaII	CCGG	2 cut(s)	125, 210
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	234, 311
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 258
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	2 cut(s)	234, 311
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	8
MaeII	ACGT	2 cut(s)	234, 311
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MluCI	AATT	2 cut(s)	60, 164
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	9 cut(s)	36, 75, 132, 165, 184, 263, 289, 299, 299
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	125, 210
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	11, 258
NaeI	GCCGGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	3 cut(s)	88, 253, 286
NmuCI	GTSAC	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	25, 273
PkrI	GCNGC	3 cut(s)	13, 208, 260
PleI	GAGTC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	88, 253, 286
PspPI	GGNCC	3 cut(s)	87, 184, 284
PspXI	VCTCGAGB	1 cut(s)	158
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SatI	GCNGC	3 cut(s)	12, 207, 259
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	87, 184, 284
SchI	GAGTC	1 cut(s)	106
SetI	ASST	5 cut(s)	13, 114, 237, 310, 314
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	158
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	87, 184, 284
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	60, 164
SsiI	CCGC	4 cut(s)	5, 187, 207, 258
SspDI	GGCGCC	1 cut(s)	251
TaiI	ACGT	2 cut(s)	237, 314
TaqI	TCGA	2 cut(s)	159, 294
TasI	AATT	2 cut(s)	60, 164
TauI	GCSGC	2 cut(s)	209, 261
TfiI	GAWTC	2 cut(s)	25, 273
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	216
VpaK11BI	GGWCC	3 cut(s)	87, 184, 284
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.