Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011809.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

5626 .. 7633

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011809.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcgggagctgcccctaacgggattccatttctgtcactgaggactggtagtgacgaaattcctccccaccaaccgctgaatgggtccatccctagcccgattggcgacctgaacttgcctccagctgacgagacacaaagactgaggcaggaactcgagcaatttcggaaggaaaaacgggaccgcgaggctcacgacgacaccatcggcgatctccatcaaaccaacaacgtggtagcaaacgcaggccccagcggctttatcgggggaatctctggcggacccctcgtcgaaggggtaagaggcacgtcgaatggagggcagaacggcggacccagtctagtccaatccaagagggcgcgcaacgaattgtggcgcgagaagatggaaaagatgatcgatgcatgcaagcgtgctggcccacgagagttggccgcggaaatcgcaagggacgtcggagctggttcctcgagtaggacagttaccttaatgtttcgggtaagatggcgtgcctcacccctcgccgagggcgggggtgggatgaaggaccacacccttgctgcgggagggggtgggatggcgtgcctcactccttgccgtgggcgggggtgggatgatggaccacaccctcgctgcgcgcgggggtgggatggcgtgcctcactcctcaccgagggcgggggtgggatggcgtgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

24.65

Weight (kDa)

9.09

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
AccII	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	456
AhdI	GACNNNNNGTC	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	312
AluBI	AGCT	3 cut(s)	11, 128, 464
AluI	AGCT	3 cut(s)	11, 128, 464
Alw26I	GTCTC	1 cut(s)	128
Ama87I	CYCGRG	2 cut(s)	158, 472
AoxI	GGCC	3 cut(s)	250, 421, 435
ApeKI	GCWGC	3 cut(s)	11, 563, 636
ApoI	RAATTY	1 cut(s)	60
AspLEI	GCGC	5 cut(s)	364, 366, 381, 641, 643
AspS9I	GGNCC	8 cut(s)	87, 184, 251, 284, 335, 422, 550, 623
AsuHPI	GGTGA	2 cut(s)	510, 663
AvaI	CYCGRG	2 cut(s)	158, 472
AvaII	GGWCC	6 cut(s)	87, 184, 284, 335, 550, 623
BauI	CACGAG	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	550, 623
BccI	CCATC	9 cut(s)	98, 215, 228, 382, 501, 574, 614, 647, 684
BceAI	ACGGC	2 cut(s)	346, 585
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	96, 344
BglI	GCCNNNNNGGC	2 cut(s)	105, 258
BisI	GCNGC	5 cut(s)	12, 259, 438, 564, 637
BlsI	GCNGC	5 cut(s)	13, 260, 439, 565, 638
Bme18I	GGWCC	6 cut(s)	87, 184, 284, 335, 550, 623
BmeRI	GACNNNNNGTC	1 cut(s)	290
BmeT110I	CYCGRG	2 cut(s)	158, 472
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	8 cut(s)	87, 184, 251, 284, 335, 422, 550, 623
BmiI	GGNNCC	6 cut(s)	88, 185, 253, 286, 337, 469
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	438, 528, 601, 674
Bse1I	ACTGG	2 cut(s)	52, 339
Bse8I	GATNNNNATC	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	438, 528, 601, 674
BseGI	GGATG	6 cut(s)	90, 549, 585, 622, 658, 695
BseJI	GATNNNNATC	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	32, 137
BseNI	ACTGG	2 cut(s)	52, 339
BsePI	GCGCGC	2 cut(s)	362, 639
BseRI	GAGGAG	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	550, 623
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
BshFI	GGCC	3 cut(s)	252, 423, 437
BshVI	ATCGAT	1 cut(s)	402
BsiHKCI	CYCGRG	2 cut(s)	158, 472
BslFI	GGGAC	2 cut(s)	197, 467
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	197, 467
BsnI	GGCC	3 cut(s)	252, 423, 437
BsoBI	CYCGRG	2 cut(s)	158, 472
Bsp143I	GATC	2 cut(s)	214, 399
BspANI	GGCC	3 cut(s)	252, 423, 437
BspCNI	CTCAG	2 cut(s)	33, 138
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
BspLI	GGNNCC	6 cut(s)	88, 185, 253, 286, 337, 469
BsrI	ACTGG	2 cut(s)	52, 339
BssECI	CCNNGG	4 cut(s)	438, 528, 601, 674
BssHII	GCGCGC	2 cut(s)	362, 639
BssMI	GATC	2 cut(s)	214, 399
BssNI	GRCGYC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	456
BstDEI	CTNAG	2 cut(s)	41, 146
BstDSI	CCRYGG	2 cut(s)	438, 601
BstENI	CCTNNNNNAGG	3 cut(s)	475, 527, 673
BstF5I	GGATG	6 cut(s)	90, 549, 585, 622, 658, 695
BstFNI	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
BstHHI	GCGC	5 cut(s)	364, 366, 381, 641, 643
BstKTI	GATC	2 cut(s)	217, 402
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	214, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 105, 258, 446
BstNSI	RCATGY	1 cut(s)	411
BstUI	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
BstV1I	GCAGC	2 cut(s)	550, 623
BstXI	CCANNNNNNTGG	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	252, 423, 437
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	2 cut(s)	438, 601
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	6 cut(s)	90, 549, 585, 622, 658, 695
BtsIMutI	CAGTG	1 cut(s)	38
CfoI	GCGC	5 cut(s)	364, 366, 381, 641, 643
Cfr13I	GGNCC	8 cut(s)	87, 184, 251, 284, 335, 422, 550, 623
Cfr42I	CCGCGG	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	402
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	9 cut(s)	11, 99, 128, 194, 252, 261, 423, 437, 464
CviKI_1	RGCY	9 cut(s)	11, 99, 128, 194, 252, 261, 423, 437, 464
DdeI	CTNAG	2 cut(s)	41, 146
DpnI	GATC	2 cut(s)	216, 401
DpnII	GATC	2 cut(s)	214, 399
DriI	GACNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	435
Eam1105I	GACNNNNNGTC	1 cut(s)	290
EciI	GGCGGA	2 cut(s)	297, 348
Eco47I	GGWCC	6 cut(s)	87, 184, 284, 335, 550, 623
Eco88I	CYCGRG	2 cut(s)	158, 472
EcoNI	CCTNNNNNAGG	3 cut(s)	475, 527, 673
EcoO109I	RGGNCCY	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	1 cut(s)	411
FaiI	YATR	1 cut(s)	409
FaqI	GGGAC	2 cut(s)	197, 467
FatI	CATG	1 cut(s)	407
FauI	CCCGC	5 cut(s)	527, 559, 600, 636, 673
Fnu4HI	GCNGC	5 cut(s)	12, 259, 438, 564, 637
FokI	GGATG	5 cut(s)	77, 556, 592, 629, 665
Fsp4HI	GCNGC	5 cut(s)	12, 259, 438, 564, 637
FspBI	CTAG	2 cut(s)	96, 344
GlaI	GCGC	5 cut(s)	363, 365, 380, 640, 642
GluI	GCNGC	5 cut(s)	12, 259, 438, 564, 637
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	252, 423, 437
HhaI	GCGC	5 cut(s)	364, 366, 381, 641, 643
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	5 cut(s)	362, 364, 379, 639, 641
HinP1I	GCGC	5 cut(s)	362, 364, 379, 639, 641
HinfI	GANTC	2 cut(s)	25, 273
HphI	GGTGA	2 cut(s)	510, 663
Hpy188I	TCNGA	2 cut(s)	171, 461
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	4 cut(s)	203, 296, 316, 461
HpyAV	CCTTC	3 cut(s)	166, 290, 541
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	3 cut(s)	234, 311, 456
HpyCH4V	TGCA	2 cut(s)	407, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 105, 258, 446
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	3 cut(s)	234, 311, 456
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	5 cut(s)	362, 364, 379, 639, 641
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	214, 399
LmnI	GCTCC	2 cut(s)	8, 461
Lsp1109I	GCAGC	2 cut(s)	550, 623
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	96, 344
MaeII	ACGT	3 cut(s)	234, 311, 456
MaeIII	GTNAC	3 cut(s)	36, 53, 484
MalI	GATC	2 cut(s)	216, 401
MboI	GATC	2 cut(s)	214, 399
MboII	GAAGA	1 cut(s)	397
MluCI	AATT	3 cut(s)	60, 164, 371
MmeI	TCCRAC	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	4 cut(s)	79, 128, 258, 440
MvnI	CGCG	6 cut(s)	189, 364, 381, 440, 641, 643
MwoI	GCNNNNNNNGC	4 cut(s)	11, 105, 258, 446
NdeII	GATC	2 cut(s)	214, 399
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	6 cut(s)	88, 185, 253, 286, 337, 469
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	36, 53
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PaeR7I	CTCGAG	2 cut(s)	158, 472
PauI	GCGCGC	2 cut(s)	362, 639
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	25, 273
PflFI	GACNNNGTC	1 cut(s)	339
PkrI	GCNGC	5 cut(s)	13, 260, 439, 565, 638
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	6 cut(s)	88, 185, 253, 286, 337, 469
PspPI	GGNCC	8 cut(s)	87, 184, 251, 284, 335, 422, 550, 623
PspXI	VCTCGAGB	2 cut(s)	158, 472
PsyI	GACNNNGTC	1 cut(s)	339
PteI	GCGCGC	2 cut(s)	362, 639
PvuII	CAGCTG	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	5 cut(s)	12, 259, 438, 564, 637
Sau3AI	GATC	2 cut(s)	214, 399
Sau96I	GGNCC	8 cut(s)	87, 184, 251, 284, 335, 422, 550, 623
SetI	ASST	8 cut(s)	13, 114, 130, 237, 314, 459, 466, 491
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	2 cut(s)	158, 472
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SinI	GGWCC	6 cut(s)	87, 184, 284, 335, 550, 623
SlaI	CTCGAG	2 cut(s)	158, 472
SmlI	CTYRAG	2 cut(s)	158, 472
SmoI	CTYRAG	2 cut(s)	158, 472
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	3 cut(s)	60, 164, 371
SspMI	CTAG	2 cut(s)	96, 344
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	3 cut(s)	237, 314, 459
TaqI	TCGA	5 cut(s)	159, 294, 314, 402, 473
TasI	AATT	3 cut(s)	60, 164, 371
TauI	GCSGC	2 cut(s)	261, 440
TfiI	GAWTC	2 cut(s)	25, 273
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	36, 53
TseI	GCWGC	3 cut(s)	11, 563, 636
Tsp45I	GTSAC	2 cut(s)	36, 53
TspDTI	ATGAA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	45
Tth111I	GACNNNGTC	1 cut(s)	339
VpaK11BI	GGWCC	6 cut(s)	87, 184, 284, 335, 550, 623
XagI	CCTNNNNNAGG	3 cut(s)	475, 527, 673
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	2 cut(s)	158, 472
XspI	CTAG	2 cut(s)	96, 344
ZraI	GACGTC	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.