Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040994.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 564

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040994.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

atggcgggagctgtgcctggtggaattccctttttgtcgctaaggactgggagcgacgaaatcccaccttctgatcggcccctgaatgagcctctcccaaacctggtcgatgatccaaacttgcctccagttagtgaggcacaaacgctgagacaagaacttgagcaactccggaaggaaaaacaggaccgagaaactagtcgacggagaaggctcgaaaggctcctccagcttgacaacgactcttcggatgaagagatcagcgatgcccaccacaaccacagggtaaccaacacaatagctggtggcgcaggtgaaatcttggttgagagattgagcggcacactgaacgataatggtagaatcggggcaggatgccacaagagaccgcgcaatgaagaatggcgagagaaaatggagaagatgatcgaacagtgcaagcgcactggccctcgagaactcacagccgaaatcgcgagagatgtcgatgcgtctccattcaccaatgacatcctcaatgcggcgaaacctcgcagattcaccacccccgttttccaaaagta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

5.89

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	202
AccII	CGCG	2 cut(s)	391, 476
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	4 cut(s)	5, 339, 389, 521
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	103, 520
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	16, 102
AluBI	AGCT	3 cut(s)	11, 232, 302
AluI	AGCT	3 cut(s)	11, 232, 302
Alw26I	GTCTC	3 cut(s)	145, 379, 498
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	453
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	77, 448
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	3 cut(s)	311, 393, 444
AspS9I	GGNCC	3 cut(s)	78, 187, 449
AsuHPI	GGTGA	3 cut(s)	326, 493, 532
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	18, 104
BcoDI	GTCTC	3 cut(s)	145, 379, 498
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	340, 522
BlsI	GCNGC	2 cut(s)	341, 523
Bme1390I	CCNGG	2 cut(s)	18, 104
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	3 cut(s)	78, 187, 449
BmiI	GGNNCC	2 cut(s)	80, 224
BmrFI	CCNGG	2 cut(s)	18, 104
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	256, 365, 478
BmuI	ACTGGG	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	111, 212
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 520
Bse1I	ACTGG	3 cut(s)	52, 128, 451
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	18, 104
BseGI	GGATG	3 cut(s)	256, 380, 510
BseLI	CCNNNNNNNGG	2 cut(s)	103, 520
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	3 cut(s)	52, 128, 451
BseRI	GAGGAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	391, 476
BshFI	GGCC	2 cut(s)	79, 450
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	103, 520
BsmAI	GTCTC	3 cut(s)	145, 379, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	79, 450
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	453
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	73, 112, 258, 426
Bsp68I	TCGCGA	1 cut(s)	476
BspACI	CCGC	4 cut(s)	5, 339, 389, 521
BspANI	GGCC	2 cut(s)	79, 450
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	2 cut(s)	391, 476
BspLI	GGNNCC	2 cut(s)	80, 224
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	52, 128, 451
BssMI	GATC	4 cut(s)	73, 112, 258, 426
Bst2UI	CCWGG	2 cut(s)	18, 104
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	2 cut(s)	249, 250
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	41, 149
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	256, 380, 510
BstFNI	CGCG	2 cut(s)	391, 476
BstHHI	GCGC	3 cut(s)	311, 393, 444
BstKTI	GATC	4 cut(s)	76, 115, 261, 429
BstMAI	GTCTC	3 cut(s)	145, 379, 498
BstMBI	GATC	4 cut(s)	73, 112, 258, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
BstNI	CCWGG	2 cut(s)	18, 104
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	16, 102
BstUI	CGCG	2 cut(s)	391, 476
BsuRI	GGCC	2 cut(s)	79, 450
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	256, 380, 510
BtsIMutI	CAGTG	3 cut(s)	344, 440, 444
BtuMI	TCGCGA	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	3 cut(s)	311, 393, 444
Cfr13I	GGNCC	3 cut(s)	78, 187, 449
CseI	GACGC	1 cut(s)	480
CsiI	ACCWGGT	1 cut(s)	102
CviJI	RGCY	9 cut(s)	11, 79, 91, 214, 223, 232, 302, 450, 467
CviKI_1	RGCY	9 cut(s)	11, 79, 91, 214, 223, 232, 302, 450, 467
DdeI	CTNAG	2 cut(s)	41, 149
DpnI	GATC	4 cut(s)	75, 114, 260, 428
DpnII	GATC	4 cut(s)	73, 112, 258, 426
Eam1104I	CTCTTC	2 cut(s)	249, 250
EarI	CTCTTC	2 cut(s)	249, 250
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	16, 102
Esp3I	CGTCTC	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	340, 522
FokI	GGATG	3 cut(s)	263, 387, 497
Fsp4HI	GCNGC	2 cut(s)	340, 522
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	3 cut(s)	310, 392, 443
GluI	GCNGC	2 cut(s)	340, 522
GsuI	CTGGAG	2 cut(s)	111, 212
HaeIII	GGCC	2 cut(s)	79, 450
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	3 cut(s)	311, 393, 444
Hin6I	GCGC	3 cut(s)	309, 391, 442
HinP1I	GCGC	3 cut(s)	309, 391, 442
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	242, 363, 537
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	3 cut(s)	326, 493, 532
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	73, 250
Hpy188III	TCNNGA	3 cut(s)	172, 455, 475
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	59, 207
HpyAV	CCTTC	3 cut(s)	78, 169, 204
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
HpyF3I	CTNAG	2 cut(s)	41, 149
HspAI	GCGC	3 cut(s)	309, 391, 442
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	73, 112, 258, 426
LmnI	GCTCC	3 cut(s)	8, 51, 228
LweI	GCATC	3 cut(s)	256, 365, 478
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	75, 114, 260, 428
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	73, 112, 258, 426
MboII	GAAGA	4 cut(s)	237, 266, 410, 433
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	102, 130, 135, 236, 462, 524, 540
MroI	TCCGGA	1 cut(s)	171
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	18, 104
MvaI	CCWGG	2 cut(s)	18, 104
MvnI	CGCG	2 cut(s)	391, 476
MwoI	GCNNNNNNNGC	4 cut(s)	220, 229, 308, 473
NdeII	GATC	4 cut(s)	73, 112, 258, 426
NlaIV	GGNNCC	2 cut(s)	80, 224
NruI	TCGCGA	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	453
PaqCI	CACCTGC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	363, 537
PkrI	GCNGC	2 cut(s)	341, 523
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	16, 102
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	2 cut(s)	16, 102
PspN4I	GGNNCC	2 cut(s)	80, 224
PspPI	GGNCC	3 cut(s)	78, 187, 449
RruI	TCGCGA	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	340, 522
Sau3AI	GATC	4 cut(s)	73, 112, 258, 426
Sau96I	GGNCC	3 cut(s)	78, 187, 449
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	18, 104
SetI	ASST	7 cut(s)	13, 70, 105, 234, 304, 316, 532
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	3 cut(s)	256, 365, 478
Sfr274I	CTCGAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	161, 453
SmoI	CTYRAG	2 cut(s)	161, 453
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	4 cut(s)	5, 339, 389, 521
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	16, 102
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	6 cut(s)	108, 202, 216, 429, 454, 486
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	24
TauI	GCSGC	2 cut(s)	342, 524
TfiI	GAWTC	2 cut(s)	363, 537
TscAI	CASTG	3 cut(s)	351, 440, 451
TspDTI	ATGAA	2 cut(s)	267, 411
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	3 cut(s)	351, 440, 451
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.