Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002517.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 517

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 419 bp

atggcgggagctgtgcctggtggaattccctttttgtcgctaaggactgggagcgacgaaatcccaccttctgatcggcccctgaatgagcctctcccaaacctggtcgatgatccaaacttgcctccagttagtgaggcacaaacgctgagacaagaacttgagcaactccggaaggaaaaacaggaccgagaaactagtcgacggagaaggctcgaaaggctcctccagcttgacaacgactcttcggatgaagagatcagcgatgcccaccacaaccacagggtaaccaacacaatagctggtggcgcaggtgaaatcttggttgagagattgagcggcacgctgaacgataatggtagaatcggggcaggacgccacaagagacggcgcaatgaagaatggcgagagaaaatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.84

Isoelectric Point (pI)

75.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	5, 339
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	103
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	16, 102
AluBI	AGCT	3 cut(s)	11, 232, 302
AluI	AGCT	3 cut(s)	11, 232, 302
Alw26I	GTCTC	2 cut(s)	145, 379
AlwI	GGATC	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	311, 393
AspS9I	GGNCC	2 cut(s)	78, 187
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	18, 104
BcoDI	GTCTC	2 cut(s)	145, 379
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	18, 104
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	78, 187
BmiI	GGNNCC	2 cut(s)	80, 224
BmrFI	CCNGG	2 cut(s)	18, 104
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	57
BpmI	CTGGAG	2 cut(s)	111, 212
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	52, 128
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	18, 104
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	52, 128
BseRI	GAGGAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	2 cut(s)	145, 379
BsmBI	CGTCTC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	73, 112, 258
BspACI	CCGC	2 cut(s)	5, 339
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	80, 224
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	52, 128
BssMI	GATC	3 cut(s)	73, 112, 258
BssNI	GRCGYC	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	18, 104
Bst6I	CTCTTC	2 cut(s)	249, 250
BstACI	GRCGYC	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	41, 149
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	256
BstHHI	GCGC	2 cut(s)	311, 393
BstKTI	GATC	3 cut(s)	76, 115, 261
BstMAI	GTCTC	2 cut(s)	145, 379
BstMBI	GATC	3 cut(s)	73, 112, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 229, 308
BstNI	CCWGG	2 cut(s)	18, 104
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	16, 102
BsuRI	GGCC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	2 cut(s)	311, 393
Cfr13I	GGNCC	2 cut(s)	78, 187
CseI	GACGC	1 cut(s)	384
CsiI	ACCWGGT	1 cut(s)	102
CviJI	RGCY	7 cut(s)	11, 79, 91, 214, 223, 232, 302
CviKI_1	RGCY	7 cut(s)	11, 79, 91, 214, 223, 232, 302
DdeI	CTNAG	2 cut(s)	41, 149
DpnI	GATC	3 cut(s)	75, 114, 260
DpnII	GATC	3 cut(s)	73, 112, 258
Eam1104I	CTCTTC	2 cut(s)	249, 250
EarI	CTCTTC	2 cut(s)	249, 250
Eco47I	GGWCC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	16, 102
Esp3I	CGTCTC	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	310, 392
GluI	GCNGC	1 cut(s)	340
GsuI	CTGGAG	2 cut(s)	111, 212
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	2 cut(s)	311, 393
Hin1I	GRCGYC	1 cut(s)	376
Hin6I	GCGC	2 cut(s)	309, 391
HinP1I	GCGC	2 cut(s)	309, 391
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	242, 363
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	73, 250
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	59, 207
HpyAV	CCTTC	3 cut(s)	78, 169, 204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 229, 308
HpyF3I	CTNAG	2 cut(s)	41, 149
Hsp92I	GRCGYC	1 cut(s)	376
HspAI	GCGC	2 cut(s)	309, 391
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	73, 112, 258
LmnI	GCTCC	3 cut(s)	8, 51, 228
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	75, 114, 260
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	3 cut(s)	73, 112, 258
MboII	GAAGA	3 cut(s)	237, 266, 410
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	102, 130, 135, 236
MroI	TCCGGA	1 cut(s)	171
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	18, 104
MvaI	CCWGG	2 cut(s)	18, 104
MwoI	GCNNNNNNNGC	3 cut(s)	220, 229, 308
NdeII	GATC	3 cut(s)	73, 112, 258
NlaIV	GGNNCC	2 cut(s)	80, 224
PaqCI	CACCTGC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	16, 102
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	2 cut(s)	16, 102
PspN4I	GGNNCC	2 cut(s)	80, 224
PspPI	GGNCC	2 cut(s)	78, 187
SalI	GTCGAC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	3 cut(s)	73, 112, 258
Sau96I	GGNCC	2 cut(s)	78, 187
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	18, 104
SetI	ASST	6 cut(s)	13, 70, 105, 234, 304, 316
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	5, 339
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	16, 102
TaqI	TCGA	3 cut(s)	108, 202, 216
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	363
TspDTI	ATGAA	2 cut(s)	267, 411
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.