Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000167.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

49622 .. 50543

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000167.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtacgcttctagccgcacaatcggaggttatgcaaagatattccatgcatttttctcagtggtttcagcgtgcgggaccaacagtcaattcctccacatcgataacaaagatcatgctgattctggtggcgaagggccggaccagtgttcctttcaactcaagcttgttgagttagggcatcacggttcctacaacgtgggccttggccacgtggagctggattacatgcaccttggccttttgggacttggccacgtggctgatggtcatatgggttattttgttctgccaatcatgtcttgcttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.26

Weight (kDa)

6.08

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	16, 75
AcoI	YGGCCR	2 cut(s)	208, 253
AcvI	CACGTG	2 cut(s)	214, 259
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	158, 310
AhdI	GACNNNNNGTC	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	166, 220
AluI	AGCT	2 cut(s)	166, 220
AoxI	GGCC	5 cut(s)	137, 202, 208, 238, 253
AspS9I	GGNCC	4 cut(s)	78, 137, 142, 202
AvaII	GGWCC	2 cut(s)	78, 142
BalI	TGGCCA	2 cut(s)	210, 255
BbrPI	CACGTG	2 cut(s)	214, 259
BccI	CCATC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	78, 142
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmgT120I	GGNCC	4 cut(s)	78, 137, 142, 202
BmiI	GGNNCC	2 cut(s)	79, 190
BmsI	GCATC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	102
BsaAI	YACGTR	2 cut(s)	214, 259
BsaJI	CCNNGG	2 cut(s)	205, 235
Bse1I	ACTGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	205, 235
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	145
BshFI	GGCC	5 cut(s)	139, 204, 210, 240, 255
BshVI	ATCGAT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	2 cut(s)	91, 261
BsmFI	GGGAC	2 cut(s)	91, 261
BsnI	GGCC	5 cut(s)	139, 204, 210, 240, 255
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	2 cut(s)	16, 75
BspANI	GGCC	5 cut(s)	139, 204, 210, 240, 255
BspCNI	CTCAG	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	79, 190
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	205, 235
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	205, 235
Bst4CI	ACNGT	2 cut(s)	86, 188
BstBAI	YACGTR	2 cut(s)	214, 259
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	5 cut(s)	139, 204, 210, 240, 255
BsuTUI	ATCGAT	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	66, 152
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	78, 137, 142, 202
ClaI	ATCGAT	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	47, 116, 229, 298
CviJI	RGCY	9 cut(s)	15, 139, 166, 204, 210, 220, 240, 255, 263
CviKI_1	RGCY	9 cut(s)	15, 139, 166, 204, 210, 220, 240, 255, 263
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	2 cut(s)	208, 253
Eam1105I	GACNNNNNGTC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	205, 235
Eco47I	GGWCC	2 cut(s)	78, 142
Eco72I	CACGTG	2 cut(s)	214, 259
EcoT14I	CCWWGG	2 cut(s)	205, 235
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	205, 235
FaeI	CATG	4 cut(s)	50, 119, 232, 301
FaiI	YATR	7 cut(s)	33, 48, 117, 230, 273, 275, 299
FaqI	GGGAC	2 cut(s)	91, 261
FatI	CATG	4 cut(s)	46, 115, 228, 297
FauI	CCCGC	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	5 cut(s)	139, 204, 210, 240, 255
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	4 cut(s)	50, 119, 232, 301
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	86, 188
HpyCH4IV	ACGT	3 cut(s)	198, 213, 258
HpyCH4V	TGCA	3 cut(s)	35, 50, 232
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	3 cut(s)	198, 213, 258
Hsp92II	CATG	4 cut(s)	50, 119, 232, 301
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	111, 153, 158, 206
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	198, 213, 258
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MlsI	TGGCCA	2 cut(s)	210, 255
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	2 cut(s)	210, 255
MnlI	CCTC	2 cut(s)	20, 104
Mox20I	TGGCCA	2 cut(s)	210, 255
Mph1103I	ATGCAT	1 cut(s)	52
MscI	TGGCCA	2 cut(s)	210, 255
Msp20I	TGGCCA	2 cut(s)	210, 255
MspI	CCGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	4 cut(s)	50, 119, 232, 301
NlaIV	GGNNCC	2 cut(s)	79, 190
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	17
PmaCI	CACGTG	2 cut(s)	214, 259
PmlI	CACGTG	2 cut(s)	214, 259
Ppu21I	YACGTR	2 cut(s)	214, 259
PspCI	CACGTG	2 cut(s)	214, 259
PspN4I	GGNNCC	2 cut(s)	79, 190
PspPI	GGNCC	4 cut(s)	78, 137, 142, 202
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	4 cut(s)	78, 137, 142, 202
SetI	ASST	7 cut(s)	31, 168, 201, 216, 222, 237, 261
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	2 cut(s)	78, 142
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	16, 75
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	2 cut(s)	205, 235
TaaI	ACNGT	2 cut(s)	86, 188
TaiI	ACGT	3 cut(s)	201, 216, 261
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	89
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	2 cut(s)	66, 152
TspRI	CASTG	2 cut(s)	66, 152
VpaK11BI	GGWCC	2 cut(s)	78, 142
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.