Rmu_co8151434.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8151434.1
OG0002265
Physical Location & Seq
Forward (+)
1 .. 651
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8151434.1_g000001.1.cds

Sequence Viewer

Length: 256 bp
tgagggcgggagctgcccctgacgggattccatttctgtcactgaggactggtagtgacgaaattcctccccagcagaagccaaatgggcccatcctgagccccattggctacctgaacttgcctccagctgacgagacgcagaggctgaggcaggaacttgagcaatttcggaaggaaaagctggaccgcgaggctcgccgtcaacaaaaacttgaaaggttcctacaacttgacagtgattcgtcaaacgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.55

Weight (kDa)

5.45

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 7, 189
AcsI RAATTY 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 3 cut(s) 13, 130, 183
AluI AGCT 3 cut(s) 13, 130, 183
Alw26I GTCTC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 147
AoxI GGCC 1 cut(s) 88
ApaI GGGCCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 88, 89, 186
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 92, 103
BbvCI CCTCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 130
BglI GCCNNNNNGGC 2 cut(s) 87, 107
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 88, 89, 186
BmiI GGNNCC 2 cut(s) 90, 223
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 2 cut(s) 97, 148
BpuEI CTTGAG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 3 cut(s) 34, 88, 139
BseNI ACTGG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 90
Bsp120I GGGCCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 92, 103
BspACI CCGC 2 cut(s) 7, 189
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 35, 89, 140
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 90, 223
BsrI ACTGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 43, 97, 148
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 13, 87, 107, 197
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 40, 243
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 147
Cfr13I GGNCC 3 cut(s) 88, 89, 186
CseI GACGC 1 cut(s) 147
CviJI RGCY 9 cut(s) 13, 81, 90, 101, 110, 130, 147, 183, 196
CviKI_1 RGCY 9 cut(s) 13, 81, 90, 101, 110, 130, 147, 183, 196
DdeI CTNAG 3 cut(s) 43, 97, 148
Eco24I GRGCYC 2 cut(s) 92, 103
Eco47I GGWCC 1 cut(s) 186
EcoT38I GRGCYC 2 cut(s) 92, 103
Esp3I CGTCTC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 92, 103
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 27, 241
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 87, 107, 197
HpyF3I CTNAG 3 cut(s) 43, 97, 148
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 32, 35, 85, 109, 127, 139, 140, 169
MaeIII GTNAC 2 cut(s) 38, 55
MhlI GDGCHC 2 cut(s) 92, 103
MluCI AATT 2 cut(s) 62, 166
MnlI CCTC 6 cut(s) 38, 77, 134, 137, 143, 186
MspA1I CMGCKG 1 cut(s) 130
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 13, 87, 107, 197
NlaIV GGNNCC 2 cut(s) 90, 223
NmuCI GTSAC 2 cut(s) 38, 55
PfeI GAWTC 2 cut(s) 27, 241
PkrI GCNGC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 90, 223
PspOMI GGGCCC 1 cut(s) 88
PspPI GGNCC 3 cut(s) 88, 89, 186
PstNI CAGNNNCTG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 130
SatI GCNGC 1 cut(s) 14
Sau96I GGNCC 3 cut(s) 88, 89, 186
SduI GDGCHC 2 cut(s) 92, 103
SetI ASST 5 cut(s) 15, 116, 132, 185, 223
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 2 cut(s) 62, 166
SsiI CCGC 2 cut(s) 7, 189
TaaI ACNGT 1 cut(s) 238
TasI AATT 2 cut(s) 62, 166
TfiI GAWTC 2 cut(s) 27, 241
TscAI CASTG 2 cut(s) 47, 243
TseFI GTSAC 2 cut(s) 38, 55
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 38, 55
TspRI CASTG 2 cut(s) 47, 243
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.