Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

15621016 .. 15621431

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAAAAATGATTGATGCATGCAAGCGAGCGACCCACGAGAATTGGCAGCGGGAATCGCAAGAGACGTCGTCTCACGGGGTCGGCGTCAACATAGTTCCAAGACCTCAAGTCGCATTCCATACCGCATTCGACACATTGAGCCACGCTTTCATTGGGCGAGGCCGAGGCGAGGCTAGCAACGGCGCTTGCCAAACCAACGACTTCAACGGACCTCATGCCAAGGGGGAAAGTGGTACAACGATTGGAAGAACAACTAAAGGAACTAGTACGGACCAACCCACGAGGGCTCTAAGGAAGCACGTGCCGGGGAGAGTGATCGATGAGTATAACCAAGAGATTCCTCGAGGGCTCGCAGTGGAATCTAAGGGGACGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.74

Weight (kDa)

9.14

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	71
AbsI	CCTCGAGG	1 cut(s)	345
AccII	CGCG	1 cut(s)	376
AciI	CCGC	3 cut(s)	52, 126, 376
AcvI	CACGTG	1 cut(s)	304
AcyI	GRCGYC	2 cut(s)	68, 87
AfaI	GTAC	2 cut(s)	238, 271
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	208
AhdI	GACNNNNNGTC	1 cut(s)	110
AhlI	ACTAGT	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	59, 78
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	212, 274
AsuC2I	CCSGG	1 cut(s)	309
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	2 cut(s)	212, 274
BanII	GRGCYC	2 cut(s)	292, 354
BauI	CACGAG	2 cut(s)	38, 283
BbrPI	CACGTG	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	59, 78
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	2 cut(s)	177, 267
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	212, 274
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	212, 274
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	7
BmtI	GCTAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	68, 87
BsaJI	CCNNGG	3 cut(s)	166, 222, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	166, 222, 308
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	59, 78
BsmBI	CGTCTC	2 cut(s)	59, 78
BsmI	GAATGC	2 cut(s)	116, 128
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	292, 354
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	3 cut(s)	52, 126, 376
BspANI	GGCC	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	166, 222, 308
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	68, 87
BssSI	CACGAG	2 cut(s)	38, 283
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	2 cut(s)	38, 283
BstACI	GRCGYC	2 cut(s)	68, 87
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	6 cut(s)	22, 26, 30, 178, 190, 354
BstDEI	CTNAG	2 cut(s)	293, 366
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	59, 78
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 177
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	6 cut(s)	22, 26, 30, 178, 190, 354
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	212, 274
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	237, 270
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	2 cut(s)	21, 218
CviJI	RGCY	5 cut(s)	144, 165, 176, 290, 352
CviKI_1	RGCY	5 cut(s)	144, 165, 176, 290, 352
CviQI	GTAC	2 cut(s)	237, 270
DdeI	CTNAG	2 cut(s)	293, 366
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DriI	GACNNNNNGTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	292, 354
Eco47I	GGWCC	2 cut(s)	212, 274
Eco72I	CACGTG	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	292, 354
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	2 cut(s)	59, 78
FaeI	CATG	2 cut(s)	24, 221
FaiI	YATR	5 cut(s)	22, 95, 123, 219, 330
FatI	CATG	2 cut(s)	20, 217
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	50
FriOI	GRGCYC	2 cut(s)	292, 354
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	177, 267
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	2 cut(s)	68, 87
Hin1II	CATG	2 cut(s)	24, 221
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	56, 340, 362
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	68, 303
HpyCH4V	TGCA	2 cut(s)	20, 24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 177
HpyF3I	CTNAG	2 cut(s)	293, 366
HpySE526I	ACGT	2 cut(s)	68, 303
Hsp92I	GRCGYC	2 cut(s)	68, 87
Hsp92II	CATG	2 cut(s)	24, 221
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	1 cut(s)	321
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	177, 267
MaeII	ACGT	2 cut(s)	68, 303
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	292, 354
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	8 cut(s)	117, 155, 161, 166, 225, 279, 341, 354
Mph1103I	ATGCAT	1 cut(s)	22
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	2 cut(s)	116, 128
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	58, 177
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	24, 221
NmeAIII	GCCGAG	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 84
PctI	GAATGC	2 cut(s)	116, 128
PfeI	GAWTC	3 cut(s)	56, 340, 362
PflFI	GACNNNGTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	51
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	304
PspCI	CACGTG	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	212, 274
PspXI	VCTCGAGB	1 cut(s)	345
PsyI	GACNNNGTC	1 cut(s)	70
RsaI	GTAC	2 cut(s)	238, 271
RsaNI	GTAC	2 cut(s)	237, 270
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	212, 274
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	292, 354
SetI	ASST	4 cut(s)	71, 109, 217, 306
SfaNI	GCATC	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	212, 274
SlaI	CTCGAG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	108, 345
SmoI	CTYRAG	2 cut(s)	108, 345
SpeI	ACTAGT	1 cut(s)	266
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	52, 126, 376
SspMI	CTAG	2 cut(s)	177, 267
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	71, 306
TaqI	TCGA	3 cut(s)	132, 321, 346
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	56, 340, 362
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	2 cut(s)	225, 287
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	212, 274
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	345
XspI	CTAG	2 cut(s)	177, 267
ZraI	GACGTC	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.