Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

18913533 .. 18920374

Gene Structure 6842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG220100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCAGGCCTAGCTGTTATTGCATCAAGGGAGCAAGAAGGATCGGTCGAGGCTCGAGCGGAACAGAATAAGGCCTGGGACCAAAATTGGAGGCGGGGACAAATCCCGAATGGGCGAGGCTTTCAAGAGAGGCAGGCCAAATTCACAATTTCTCCAGCGGCAATCCTGCTCGCGCACAAGCACGAAGGTGTATTCACCAAGCCGCCACCCATGATGACAGACCCAGCGAAGCGGGATCAATCACGGTCTTTGTTATCTGTCCCAAAGATCTCCTCTGCTTTCCTTAAGAGTTTCCTGGAAGAAAATGTATACAAATTGTTCACTATTTTTGTAATCAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.87

Weight (kDa)

9.69

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	173
AciI	CCGC	5 cut(s)	59, 94, 158, 203, 232
AclWI	GGATC	2 cut(s)	49, 243
AcsI	RAATTY	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	74, 294
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AlwI	GGATC	2 cut(s)	49, 243
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	3 cut(s)	7, 72, 135
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	76, 296
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	159, 203
BlsI	GCNGC	2 cut(s)	160, 204
Bme1390I	CCNGG	2 cut(s)	76, 296
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	76, 296
BmsI	GCATC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
BseBI	CCWGG	2 cut(s)	76, 296
BseDI	CCNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	9, 74, 137
BsiEI	CGRYCG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	54
BslFI	GGGAC	3 cut(s)	92, 111, 245
BsmFI	GGGAC	3 cut(s)	92, 111, 245
BsnI	GGCC	3 cut(s)	9, 74, 137
BsoBI	CYCGRG	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	41, 235, 267
BspACI	CCGC	5 cut(s)	59, 94, 158, 203, 232
BspANI	GGCC	3 cut(s)	9, 74, 137
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	49, 243
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	41, 235, 267
BssNAI	GTATAC	1 cut(s)	310
Bst1107I	GTATAC	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	76, 296
Bst4CI	ACNGT	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	135, 171
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	44, 238, 270
BstMBI	GATC	3 cut(s)	41, 235, 267
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	76, 296
BstSCI	CCNGG	2 cut(s)	74, 294
BstUI	CGCG	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	9, 74, 137
Cac8I	GCNNGC	2 cut(s)	135, 171
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	9, 14, 53, 74, 120, 137, 202
CviKI_1	RGCY	7 cut(s)	9, 14, 53, 74, 120, 137, 202
DpnI	GATC	3 cut(s)	43, 237, 269
DpnII	GATC	3 cut(s)	41, 235, 267
Eco147I	AGGCCT	2 cut(s)	9, 74
Eco47I	GGWCC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	74, 294
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	212, 310
FaqI	GGGAC	3 cut(s)	92, 111, 245
FatI	CATG	1 cut(s)	210
FauI	CCCGC	2 cut(s)	87, 225
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	159, 203
Fsp4HI	GCNGC	2 cut(s)	159, 203
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	159, 203
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	9, 74, 137
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	310, 321
Hpy188III	TCNNGA	2 cut(s)	106, 125
Hpy8I	GTNNAC	2 cut(s)	310, 321
HpyAV	CCTTC	2 cut(s)	32, 179
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	41, 235, 267
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	61, 88, 119, 168, 179, 237, 281, 308
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	11
MalI	GATC	3 cut(s)	43, 237, 269
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	41, 235, 267
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	4 cut(s)	85, 140, 147, 314
MnlI	CCTC	5 cut(s)	43, 84, 110, 123, 283
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	76, 296
MvaI	CCWGG	2 cut(s)	76, 296
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	3 cut(s)	41, 235, 267
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	80
OliI	CACNNNNGTG	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	54
PceI	AGGCCT	2 cut(s)	9, 74
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	160, 204
Psp6I	CCWGG	2 cut(s)	74, 294
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	74, 294
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	159, 203
Sau3AI	GATC	3 cut(s)	41, 235, 267
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	76, 296
SetI	ASST	2 cut(s)	16, 190
SfaNI	GCATC	1 cut(s)	32
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	54, 284
SmoI	CTYRAG	2 cut(s)	54, 284
Sse9I	AATT	4 cut(s)	85, 140, 147, 314
SseBI	AGGCCT	2 cut(s)	9, 74
SsiI	CCGC	5 cut(s)	59, 94, 158, 203, 232
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	2 cut(s)	9, 74
StyD4I	CCNGG	2 cut(s)	74, 294
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	48, 55
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	85, 140, 147, 314
TauI	GCSGC	2 cut(s)	161, 205
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.