Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000939.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

82764 .. 83562

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000939.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggtgggagtggaaggtttcaatctggatccacctgacaagactaaatttggtggatcgcaacacgaccaaaatgcaaacattcttgaaaaaatgaaaaagatggaggagggactcgctcagttacgaaagaaggaggagctccgagaggctcgtaagcagaagcggaaagagaacaagcaggaaccaatcgaagattcaagcgatgaagaagaagaggaggagcccaccaaaaagttcattcacagtgacgccgagatttcagtaggagggagctcggaatccatgttggagaatagccagaagaaagcgaagaagtacgactggaccaccgatccggtggatcagcttagaaagttcatgcagcaaatgaccacagagataaaatgtgaagtccgaaatgctagtctcggagaattggccgcggccggtgcaagggagataggaaggtccccatttatcaatgaaattcttagcgtggagaaaccgcgcaagttagttacgcctattttttatcagtacgactggaccaccgatccggtggatcaccttagaaagttcatgcagcaaatgaccacagagacgaatgatgagagacttttctgcaacgtcgtttcaaaggagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

209

Amino Acids

24.16

Weight (kDa)

5.26

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	425, 490
AciI	CCGC	4 cut(s)	166, 423, 425, 488
AclWI	GGATC	7 cut(s)	23, 36, 64, 329, 351, 530, 552
AcoI	YGGCCR	2 cut(s)	420, 426
AcsI	RAATTY	2 cut(s)	47, 468
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	320, 521
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	22, 89, 201, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	3 cut(s)	142, 276, 349
AluI	AGCT	3 cut(s)	142, 276, 349
Alw21I	GWGCWC	2 cut(s)	144, 278
Alw26I	GTCTC	3 cut(s)	413, 575, 589
AlwI	GGATC	7 cut(s)	23, 36, 64, 329, 351, 530, 552
AoxI	GGCC	2 cut(s)	420, 426
ApeKI	GCWGC	2 cut(s)	364, 565
ApoI	RAATTY	2 cut(s)	47, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	327, 450, 528
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	327, 450, 528
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	3 cut(s)	144, 228, 278
Bbv12I	GWGCWC	2 cut(s)	144, 278
BbvI	GCAGC	2 cut(s)	376, 577
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BcoDI	GTCTC	3 cut(s)	413, 575, 589
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	4 cut(s)	365, 423, 426, 566
BlsI	GCNGC	4 cut(s)	366, 424, 427, 567
Bme18I	GGWCC	3 cut(s)	327, 450, 528
BmgT120I	GGNCC	3 cut(s)	327, 450, 528
BmiI	GGNNCC	4 cut(s)	30, 186, 225, 452
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	2 cut(s)	337, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	329, 530
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	329, 530
BseRI	GAGGAG	4 cut(s)	122, 152, 233, 236
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	376, 577
Bsh1236I	CGCG	2 cut(s)	425, 490
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	422, 428
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	144, 278
BsiSI	CCGG	3 cut(s)	338, 429, 539
BslFI	GGGAC	2 cut(s)	126, 436
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	3 cut(s)	413, 575, 589
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	126, 436
BsnI	GGCC	2 cut(s)	422, 428
Bsp1286I	GDGCHC	3 cut(s)	144, 228, 278
Bsp143I	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
BspACI	CCGC	4 cut(s)	166, 423, 425, 488
BspANI	GGCC	2 cut(s)	422, 428
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	425, 490
BspLI	GGNNCC	4 cut(s)	30, 186, 225, 452
BspPI	GGATC	7 cut(s)	23, 36, 64, 329, 351, 530, 552
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	329, 530
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	252
BstDEI	CTNAG	4 cut(s)	120, 350, 473, 551
BstDSI	CCRYGG	1 cut(s)	423
BstFNI	CGCG	2 cut(s)	425, 490
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	6 cut(s)	31, 59, 337, 346, 538, 547
BstMAI	GTCTC	3 cut(s)	413, 575, 589
BstMBI	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstUI	CGCG	2 cut(s)	425, 490
BstV1I	GCAGC	2 cut(s)	376, 577
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	422, 428
BtgI	CCRYGG	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	327, 450, 528
Cfr42I	CCGCGG	1 cut(s)	426
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	319, 520
CviAII	CATG	3 cut(s)	286, 361, 562
CviJI	RGCY	8 cut(s)	142, 152, 226, 276, 300, 349, 422, 428
CviKI_1	RGCY	8 cut(s)	142, 152, 226, 276, 300, 349, 422, 428
CviQI	GTAC	2 cut(s)	319, 520
DdeI	CTNAG	4 cut(s)	120, 350, 473, 551
DpnI	GATC	6 cut(s)	30, 58, 336, 345, 537, 546
DpnII	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
EaeI	YGGCCR	2 cut(s)	420, 426
EagI	CGGCCG	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	2 cut(s)	142, 276
EclXI	CGGCCG	1 cut(s)	426
Eco24I	GRGCYC	3 cut(s)	144, 228, 278
Eco47I	GGWCC	3 cut(s)	327, 450, 528
Eco52I	CGGCCG	1 cut(s)	426
Eco53kI	GAGCTC	2 cut(s)	142, 276
EcoICRI	GAGCTC	2 cut(s)	142, 276
EcoO109I	RGGNCCY	1 cut(s)	450
EcoT38I	GRGCYC	3 cut(s)	144, 228, 278
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	3 cut(s)	289, 364, 565
FaiI	YATR	3 cut(s)	287, 362, 563
FaqI	GGGAC	2 cut(s)	126, 436
FatI	CATG	3 cut(s)	285, 360, 561
Fnu4HI	GCNGC	4 cut(s)	365, 423, 426, 566
FriOI	GRGCYC	3 cut(s)	144, 228, 278
Fsp4HI	GCNGC	4 cut(s)	365, 423, 426, 566
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	4 cut(s)	365, 423, 426, 566
HaeIII	GGCC	2 cut(s)	422, 428
HapII	CCGG	3 cut(s)	338, 429, 539
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	289, 364, 565
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	114, 197, 281
HpaII	CCGG	3 cut(s)	338, 429, 539
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	146, 280, 398, 413
Hpy188III	TCNNGA	2 cut(s)	26, 86
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	3 cut(s)	8, 127, 441
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	77, 364, 434, 565, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	4 cut(s)	120, 350, 473, 551
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	289, 364, 565
HspAI	GCGC	1 cut(s)	490
KspI	CCGCGG	1 cut(s)	426
Kzo9I	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
LmnI	GCTCC	4 cut(s)	139, 147, 223, 273
LpnPI	CCDG	9 cut(s)	11, 48, 167, 310, 314, 351, 442, 511, 552
Lsp1109I	GCAGC	2 cut(s)	376, 577
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	123, 248, 499
MalI	GATC	6 cut(s)	30, 58, 336, 345, 537, 546
MboI	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
MboII	GAAGA	6 cut(s)	206, 221, 224, 227, 316, 325
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	3 cut(s)	144, 228, 278
MluCI	AATT	3 cut(s)	47, 416, 468
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	100, 103, 130, 142, 211, 214, 263
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	338, 429, 539
MvnI	CGCG	2 cut(s)	425, 490
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
NlaIII	CATG	3 cut(s)	289, 364, 565
NlaIV	GGNNCC	4 cut(s)	30, 186, 225, 452
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	197, 281
PkrI	GCNGC	4 cut(s)	366, 424, 427, 567
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	450
Psp124BI	GAGCTC	2 cut(s)	144, 278
Psp5II	RGGWCCY	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	30, 186, 225, 452
PspPI	GGNCC	3 cut(s)	327, 450, 528
PspPPI	RGGWCCY	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	320, 521
RsaNI	GTAC	2 cut(s)	319, 520
SacI	GAGCTC	2 cut(s)	144, 278
SacII	CCGCGG	1 cut(s)	426
SatI	GCNGC	4 cut(s)	365, 423, 426, 566
Sau3AI	GATC	6 cut(s)	28, 56, 334, 343, 535, 544
Sau96I	GGNCC	3 cut(s)	327, 450, 528
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	3 cut(s)	144, 228, 278
SetI	ASST	8 cut(s)	19, 37, 144, 278, 351, 452, 552, 612
Sfr303I	CCGCGG	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	327, 450, 528
Sse9I	AATT	3 cut(s)	47, 416, 468
SsiI	CCGC	4 cut(s)	166, 423, 425, 488
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	2 cut(s)	144, 278
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	47, 416, 468
TauI	GCSGC	2 cut(s)	425, 428
TfiI	GAWTC	2 cut(s)	197, 281
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	364, 565
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	6 cut(s)	110, 222, 229, 349, 480, 550
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	3 cut(s)	327, 450, 528
XapI	RAATTY	2 cut(s)	47, 468
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 538
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.