Rmu_sc0005120.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005120.1
OG0002265
Physical Location & Seq
Reverse (-)
4355 .. 6020
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005120.1_g000002.1.cds

Sequence Viewer

Length: 882 bp
atggttggatgttttagtgtgaaggatgttgaactatatgctgctgctttgggacttcaagcattgcttcaagctagatttcaatctttcaaaatcatcctgaaattggattccttgttcacggtctttgatttaaagagaaaaggggttgatctttccgtagaaagtgtcttaattgaagagggaggaaaagattccctcgaggtggatttagttgagctgagacacaatcccctcaaggaggagaagattccctcagggtggatttgggtgaggcgaggtacaattcccacaagatgggtatgggtgcagcggaatcggtcaactgatccgttcggcttatccaaaatcccaagtattcggagcatcggagtaccttttggaggtacccccacccattccttttcaaaagcagagagcgtcaagtcaaagccctaccttaaggatcgtcattcagttcttggaacacaaatccccactcccgctccaaaacggaaggagagcgagcaggatccaattggagattcaagcgatgaagaagaagagaaggagcctaccaaaaagtccgctcacggtgacgccgagatttcagcaggagggtgctcgggatccatgtcggagaacaaccagaagaaagcaaagaaggtcaaagaagaaagctggaggtcccagatagagaaaatgttgagagaagtgcgaaatactagtctcggagaattggctgtggctgctgcaagggagatagggaggtccccatttatcgatgaaattcttagtgtggagaaaccgcgcaagttcgttacgcctatttttcatcagtacgatgggaccaccaatccagtggatcaactcagacagttcatgcagcagatgaccacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.84

Weight (kDa)

8.69

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 297
AccBSI CCGCTC 2 cut(s) 485, 569
AccII CGCG 1 cut(s) 790
AciI CCGC 4 cut(s) 313, 483, 567, 788
AclWI GGATC 7 cut(s) 323, 453, 506, 519, 603, 616, 852
AcsI RAATTY 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 4 cut(s) 283, 375, 388, 821
AfiI CCNNNNNNNGG 6 cut(s) 106, 205, 241, 261, 297, 383
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 8 cut(s) 32, 59, 71, 83, 91, 179, 408, 528
AhlI ACTAGT 1 cut(s) 704
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 3 cut(s) 74, 220, 660
AluI AGCT 3 cut(s) 74, 220, 660
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 217, 713
AlwI GGATC 7 cut(s) 323, 453, 506, 519, 603, 616, 852
Ama87I CYCGRG 2 cut(s) 200, 604
ApeKI GCWGC 6 cut(s) 41, 44, 310, 728, 731, 865
ApoI RAATTY 1 cut(s) 768
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
Asp700I GAANNNNTTC 1 cut(s) 193
Asp718I GGTACC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 3 cut(s) 666, 750, 828
AsuHPI GGTGA 2 cut(s) 283, 587
AvaI CYCGRG 2 cut(s) 200, 604
AvaII GGWCC 3 cut(s) 666, 750, 828
AxyI CCTNAGG 1 cut(s) 256
BamHI GGATCC 2 cut(s) 511, 608
BanI GGYRCC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 6 cut(s) 28, 31, 322, 715, 718, 877
BccI CCATC 2 cut(s) 291, 818
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 2 cut(s) 217, 713
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 2 cut(s) 75, 705
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 6 cut(s) 42, 45, 311, 729, 732, 866
BlsI GCNGC 6 cut(s) 43, 46, 312, 730, 733, 867
Bme18I GGWCC 3 cut(s) 666, 750, 828
BmeT110I CYCGRG 2 cut(s) 200, 604
BmgT120I GGNCC 3 cut(s) 666, 750, 828
BmiI GGNNCC 7 cut(s) 388, 513, 552, 610, 668, 752, 829
BmsI GCATC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 205, 241, 261, 297, 383
Bse1I ACTGG 1 cut(s) 839
Bse21I CCTNAGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 762
BseGI GGATG 3 cut(s) 14, 31, 96
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 6 cut(s) 106, 205, 241, 261, 297, 383
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 3 cut(s) 212, 270, 865
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 6 cut(s) 28, 31, 322, 715, 718, 877
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 790
BshNI GGYRCC 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 2 cut(s) 200, 604
BslFI GGGAC 4 cut(s) 66, 652, 736, 841
BslI CCNNNNNNNGG 6 cut(s) 106, 205, 241, 261, 297, 383
BsmAI GTCTC 2 cut(s) 217, 713
BsmFI GGGAC 4 cut(s) 66, 652, 736, 841
BsoBI CYCGRG 2 cut(s) 200, 604
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 6 cut(s) 151, 328, 445, 511, 608, 844
BspACI CCGC 4 cut(s) 313, 483, 567, 788
BspCNI CTCAG 3 cut(s) 213, 269, 864
BspDI ATCGAT 1 cut(s) 762
BspFNI CGCG 1 cut(s) 790
BspLI GGNNCC 7 cut(s) 388, 513, 552, 610, 668, 752, 829
BspPI GGATC 7 cut(s) 323, 453, 506, 519, 603, 616, 852
BspT107I GGYRCC 1 cut(s) 386
BspTI CTTAAG 1 cut(s) 440
BsrBI CCGCTC 2 cut(s) 485, 569
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 1 cut(s) 839
BssMI GATC 6 cut(s) 151, 328, 445, 511, 608, 844
BssNI GRCGYC 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 124, 575, 858
Bst6I CTCTTC 2 cut(s) 174, 537
BstACI GRCGYC 1 cut(s) 579
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 4 cut(s) 221, 256, 773, 851
BstENI CCTNNNNNAGG 2 cut(s) 239, 381
BstF5I GGATG 3 cut(s) 14, 31, 96
BstFNI CGCG 1 cut(s) 790
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 6 cut(s) 154, 331, 448, 514, 611, 847
BstMAI GTCTC 2 cut(s) 217, 713
BstMBI GATC 6 cut(s) 151, 328, 445, 511, 608, 844
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstUI CGCG 1 cut(s) 790
BstV1I GCAGC 6 cut(s) 28, 31, 322, 715, 718, 877
BstX2I RGATCY 2 cut(s) 511, 608
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 2 cut(s) 511, 608
Bsu15I ATCGAT 1 cut(s) 762
Bsu36I CCTNAGG 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 14, 31, 96
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 1 cut(s) 506
CfoI GCGC 1 cut(s) 792
Cfr13I GGNCC 3 cut(s) 666, 750, 828
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 2 cut(s) 409, 587
Csp6I GTAC 4 cut(s) 282, 374, 387, 820
CviAII CATG 2 cut(s) 613, 862
CviJI RGCY 8 cut(s) 74, 220, 339, 433, 553, 660, 722, 728
CviKI_1 RGCY 8 cut(s) 74, 220, 339, 433, 553, 660, 722, 728
CviQI GTAC 4 cut(s) 282, 374, 387, 820
DdeI CTNAG 4 cut(s) 221, 256, 773, 851
DpnI GATC 6 cut(s) 153, 330, 447, 513, 610, 846
DpnII GATC 6 cut(s) 151, 328, 445, 511, 608, 844
DraI TTTAAA 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 174, 537
EarI CTCTTC 2 cut(s) 174, 537
Eco47I GGWCC 3 cut(s) 666, 750, 828
Eco81I CCTNAGG 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 200, 604
EcoNI CCTNNNNNAGG 2 cut(s) 239, 381
EcoO109I RGGNCCY 2 cut(s) 666, 750
FaeI CATG 2 cut(s) 616, 865
FaiI YATR 6 cut(s) 37, 39, 304, 614, 863, 880
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 4 cut(s) 66, 652, 736, 841
FatI CATG 2 cut(s) 612, 861
FauI CCCGC 1 cut(s) 490
Fnu4HI GCNGC 6 cut(s) 42, 45, 311, 729, 732, 866
FokI GGATG 3 cut(s) 21, 38, 83
Fsp4HI GCNGC 6 cut(s) 42, 45, 311, 729, 732, 866
FspBI CTAG 2 cut(s) 75, 705
GlaI GCGC 1 cut(s) 791
GluI GCNGC 6 cut(s) 42, 45, 311, 729, 732, 866
GsuI CTGGAG 1 cut(s) 682
HgaI GACGC 2 cut(s) 409, 587
HhaI GCGC 1 cut(s) 792
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 2 cut(s) 616, 865
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 5 cut(s) 110, 194, 250, 316, 524
HphI GGTGA 2 cut(s) 283, 587
Hpy166II GTNNAC 2 cut(s) 120, 324
Hpy188I TCNGA 5 cut(s) 363, 371, 619, 713, 854
Hpy188III TCNNGA 2 cut(s) 100, 606
Hpy8I GTNNAC 2 cut(s) 120, 324
HpyAV CCTTC 4 cut(s) 16, 490, 541, 637
HpyCH4III ACNGT 3 cut(s) 124, 575, 858
HpyCH4V TGCA 3 cut(s) 310, 734, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 4 cut(s) 221, 256, 773, 851
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 2 cut(s) 616, 865
HspAI GCGC 1 cut(s) 790
KpnI GGTACC 1 cut(s) 390
Kzo9I GATC 6 cut(s) 151, 328, 445, 511, 608, 844
LmnI GCTCC 3 cut(s) 363, 490, 550
LpnPI CCDG 8 cut(s) 113, 243, 494, 579, 641, 646, 683, 852
Lsp1109I GCAGC 6 cut(s) 28, 31, 322, 715, 718, 877
LweI GCATC 1 cut(s) 375
MaeI CTAG 2 cut(s) 75, 705
MaeIII GTNAC 2 cut(s) 575, 799
MalI GATC 6 cut(s) 153, 330, 447, 513, 610, 846
MbiI CCGCTC 2 cut(s) 485, 569
MboI GATC 6 cut(s) 151, 328, 445, 511, 608, 844
MboII GAAGA 7 cut(s) 191, 259, 548, 551, 554, 643, 665
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 2 cut(s) 511, 608
MhlI GDGCHC 1 cut(s) 605
MluCI AATT 6 cut(s) 104, 174, 285, 516, 716, 768
MmeI TCCRAC 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 3 cut(s) 134, 173, 441
MspA1I CMGCKG 1 cut(s) 313
MspCI CTTAAG 1 cut(s) 440
MunI CAATTG 1 cut(s) 516
MvnI CGCG 1 cut(s) 790
MwoI GCNNNNNNNGC 1 cut(s) 728
NdeII GATC 6 cut(s) 151, 328, 445, 511, 608, 844
NlaIII CATG 2 cut(s) 616, 865
NlaIV GGNNCC 7 cut(s) 388, 513, 552, 610, 668, 752, 829
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 5 cut(s) 110, 194, 250, 316, 524
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 6 cut(s) 43, 46, 312, 730, 733, 867
PpuMI RGGWCCY 2 cut(s) 666, 750
Psp5II RGGWCCY 2 cut(s) 666, 750
PspN4I GGNNCC 7 cut(s) 388, 513, 552, 610, 668, 752, 829
PspPI GGNCC 3 cut(s) 666, 750, 828
PspPPI RGGWCCY 2 cut(s) 666, 750
PspXI VCTCGAGB 1 cut(s) 200
PsuI RGATCY 2 cut(s) 511, 608
RsaI GTAC 4 cut(s) 283, 375, 388, 821
RsaNI GTAC 4 cut(s) 282, 374, 387, 820
SaqAI TTAA 3 cut(s) 134, 173, 441
SatI GCNGC 6 cut(s) 42, 45, 311, 729, 732, 866
Sau3AI GATC 6 cut(s) 151, 328, 445, 511, 608, 844
Sau96I GGNCC 3 cut(s) 666, 750, 828
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 3 cut(s) 666, 750, 828
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 200, 236, 440
SmoI CTYRAG 3 cut(s) 200, 236, 440
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 6 cut(s) 104, 174, 285, 516, 716, 768
SsiI CCGC 4 cut(s) 313, 483, 567, 788
SspMI CTAG 2 cut(s) 75, 705
TaaI ACNGT 3 cut(s) 124, 575, 858
TaqI TCGA 2 cut(s) 201, 762
TaqII GACCGA 1 cut(s) 309
TasI AATT 6 cut(s) 104, 174, 285, 516, 716, 768
TfiI GAWTC 5 cut(s) 110, 194, 250, 316, 524
Tru1I TTAA 3 cut(s) 134, 173, 441
Tru9I TTAA 3 cut(s) 134, 173, 441
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 6 cut(s) 41, 44, 310, 728, 731, 865
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 549, 780, 803, 850
TspGWI ACGGA 3 cut(s) 148, 321, 508
TspRI CASTG 1 cut(s) 846
Van91I CCANNNNNTGG 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 666, 750, 828
XagI CCTNNNNNAGG 2 cut(s) 239, 381
XapI RAATTY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 75, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.