Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001571.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

46154 .. 46579

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001571.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggcgggagctgcccctaacgggattccatttctgtcactgaggactggtagtgacgaaattcctccccaccaaccgccgaatgggtccatccctagccccattggcgacctgaacttgcctccagctgacgagacacagagactgaggcaggaactcgagcaatttcggaaggaaaaacgggaccgcgaggctcgtcgtcgacgaaaacttgaaaggttcctacaacttgacagtgattcgtcagacgacgacgccatcggcgatctccatcaaaccaacaatgtggtagcaaacgcaggccccagcggcgttatcgggggaatctctggcggacccctcgtcgaaggggtaggaggcacgtcgaatggagggcagaacggcggagccgatctagtccaatccaagagggcgcgccacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.96

Weight (kDa)

5.61

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AccII	CGCG	2 cut(s)	189, 415
AciI	CCGC	6 cut(s)	5, 77, 187, 309, 333, 384
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	21, 83
AgsI	TTSAA	1 cut(s)	215
AhdI	GACNNNNNGTC	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	363
AluBI	AGCT	2 cut(s)	11, 128
AluI	AGCT	2 cut(s)	11, 128
Alw26I	GTCTC	2 cut(s)	128, 136
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	60
AscI	GGCGCGCC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	415, 417
AspS9I	GGNCC	4 cut(s)	87, 184, 302, 335
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	87, 184, 335
BccI	CCATC	3 cut(s)	98, 266, 279
BceAI	ACGGC	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	128, 136
BfaI	CTAG	2 cut(s)	96, 395
BglI	GCCNNNNNGGC	2 cut(s)	105, 309
BisI	GCNGC	2 cut(s)	12, 310
BlsI	GCNGC	2 cut(s)	13, 311
Bme18I	GGWCC	3 cut(s)	87, 184, 335
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	363
BmgT120I	GGNCC	4 cut(s)	87, 184, 302, 335
BmiI	GGNNCC	6 cut(s)	88, 185, 221, 304, 337, 388
BpmI	CTGGAG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 83
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	21, 83
BseMII	CTCAG	2 cut(s)	32, 137
BseNI	ACTGG	1 cut(s)	52
BsePI	GCGCGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	189, 415
BshFI	GGCC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	21, 83
BsmAI	GTCTC	2 cut(s)	128, 136
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	265, 391
BspACI	CCGC	6 cut(s)	5, 77, 187, 309, 333, 384
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	33, 138
BspFNI	CGCG	2 cut(s)	189, 415
BspLI	GGNNCC	6 cut(s)	88, 185, 221, 304, 337, 388
BsrI	ACTGG	1 cut(s)	52
BssHII	GCGCGC	1 cut(s)	413
BssMI	GATC	2 cut(s)	265, 391
BssNI	GRCGYC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	301, 415
BstDEI	CTNAG	2 cut(s)	41, 146
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	189, 415
BstHHI	GCGC	2 cut(s)	415, 417
BstKTI	GATC	2 cut(s)	268, 394
BstMAI	GTCTC	2 cut(s)	128, 136
BstMBI	GATC	2 cut(s)	265, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 105, 309
BstUI	CGCG	2 cut(s)	189, 415
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	38, 241
Cac8I	GCNNGC	2 cut(s)	301, 415
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	415, 417
Cfr13I	GGNCC	4 cut(s)	87, 184, 302, 335
CseI	GACGC	1 cut(s)	263
CviJI	RGCY	6 cut(s)	11, 99, 128, 194, 303, 389
CviKI_1	RGCY	6 cut(s)	11, 99, 128, 194, 303, 389
DdeI	CTNAG	2 cut(s)	41, 146
DpnI	GATC	2 cut(s)	267, 393
DpnII	GATC	2 cut(s)	265, 391
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EciI	GGCGGA	2 cut(s)	348, 399
Eco47I	GGWCC	3 cut(s)	87, 184, 335
Eco88I	CYCGRG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	302
FaqI	GGGAC	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	12, 310
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	12, 310
FspBI	CTAG	2 cut(s)	96, 395
GlaI	GCGC	2 cut(s)	414, 416
GluI	GCNGC	2 cut(s)	12, 310
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	415, 417
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	2 cut(s)	413, 415
HinP1I	GCGC	2 cut(s)	413, 415
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	25, 239, 324
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	171, 247
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	7 cut(s)	201, 204, 207, 254, 257, 347, 367
HpyAV	CCTTC	2 cut(s)	166, 341
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 105, 309
HpyF3I	CTNAG	2 cut(s)	41, 146
HpySE526I	ACGT	1 cut(s)	362
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	2 cut(s)	413, 415
Kzo9I	GATC	2 cut(s)	265, 391
LmnI	GCTCC	2 cut(s)	8, 386
LpnPI	CCDG	7 cut(s)	33, 125, 137, 138, 285, 315, 319
MaeI	CTAG	2 cut(s)	96, 395
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	36, 53
MalI	GATC	2 cut(s)	267, 393
MboI	GATC	2 cut(s)	265, 391
MluCI	AATT	2 cut(s)	60, 164
MnlI	CCTC	9 cut(s)	36, 75, 132, 141, 184, 350, 350, 365, 402
MspA1I	CMGCKG	2 cut(s)	128, 309
MvnI	CGCG	2 cut(s)	189, 415
MwoI	GCNNNNNNNGC	3 cut(s)	11, 105, 309
NdeII	GATC	2 cut(s)	265, 391
NlaIV	GGNNCC	6 cut(s)	88, 185, 221, 304, 337, 388
NmuCI	GTSAC	2 cut(s)	36, 53
PaeR7I	CTCGAG	1 cut(s)	158
PalAI	GGCGCGCC	1 cut(s)	413
PauI	GCGCGC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	3 cut(s)	202, 261, 387
PfeI	GAWTC	3 cut(s)	25, 239, 324
PkrI	GCNGC	2 cut(s)	13, 311
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	6 cut(s)	88, 185, 221, 304, 337, 388
PspPI	GGNCC	4 cut(s)	87, 184, 302, 335
PspXI	VCTCGAGB	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	145
PteI	GCGCGC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	128
SalI	GTCGAC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	12, 310
Sau3AI	GATC	2 cut(s)	265, 391
Sau96I	GGNCC	4 cut(s)	87, 184, 302, 335
SetI	ASST	5 cut(s)	13, 114, 130, 221, 365
Sfr274I	CTCGAG	1 cut(s)	158
SgrDI	CGTCGACG	1 cut(s)	201
SgsI	GGCGCGCC	1 cut(s)	413
SinI	GGWCC	3 cut(s)	87, 184, 335
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	60, 164
SsiI	CCGC	6 cut(s)	5, 77, 187, 309, 333, 384
SspMI	CTAG	2 cut(s)	96, 395
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	4 cut(s)	159, 202, 345, 365
TasI	AATT	2 cut(s)	60, 164
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	25, 239, 324
TscAI	CASTG	2 cut(s)	45, 241
TseFI	GTSAC	2 cut(s)	36, 53
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	36, 53
TspRI	CASTG	2 cut(s)	45, 241
VpaK11BI	GGWCC	3 cut(s)	87, 184, 335
XapI	RAATTY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	2 cut(s)	96, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.