Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036344.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Forward (+)

2985 .. 3329

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036344.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcgggagctgtgcctggtggaattccctttttgtcgctaaggactaggagcgacgaaatcccaccttctgatcggcccctgaatgagcctctcccaaacctggtcggtgatctgaacttgcctccagttgatgaggcacaaacgttgaggcaagaacttgagcagcttcgaagggaaaagcaagatcgagaaactcaacggcggagaaagctcgaaacgatcctccaacttgacagcgactcttcggatgaagaactcagcgatgcccaccaccaccacaggatggccaacacgatagccgaaggcctcattgtggcgtggccggcggcagcaataatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.8

Weight (kDa)

5.0

Isoelectric Point (pI)

69.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	3 cut(s)	5, 205, 329
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	288, 323
AcsI	RAATTY	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	103, 286, 316
AjnI	CCWGG	2 cut(s)	16, 102
AluBI	AGCT	3 cut(s)	11, 169, 214
AluI	AGCT	3 cut(s)	11, 169, 214
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	4 cut(s)	77, 288, 307, 323
ApeKI	GCWGC	2 cut(s)	166, 332
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	18, 104
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	167, 330, 333
BlsI	GCNGC	3 cut(s)	168, 331, 334
Bme1390I	CCNGG	2 cut(s)	18, 104
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	18, 104
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 286, 316
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	18, 104
BseGI	GGATG	2 cut(s)	256, 291
BseLI	CCNNNNNNNGG	3 cut(s)	103, 286, 316
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	4 cut(s)	79, 290, 309, 325
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	103, 286, 316
BsnI	GGCC	4 cut(s)	79, 290, 309, 325
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	73, 112, 187, 222
BspACI	CCGC	3 cut(s)	5, 205, 329
BspANI	GGCC	4 cut(s)	79, 290, 309, 325
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	4 cut(s)	73, 112, 187, 222
Bst2UI	CCWGG	2 cut(s)	18, 104
Bst6I	CTCTTC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	41, 260
BstF5I	GGATG	2 cut(s)	256, 291
BstKTI	GATC	4 cut(s)	76, 115, 190, 225
BstMBI	GATC	4 cut(s)	73, 112, 187, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 326
BstNI	CCWGG	2 cut(s)	18, 104
BstSCI	CCNGG	2 cut(s)	16, 102
BstV1I	GCAGC	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	79, 290, 309, 325
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	256, 291
Cac8I	GCNNGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	102
CviJI	RGCY	9 cut(s)	11, 79, 91, 169, 214, 290, 302, 309, 325
CviKI_1	RGCY	9 cut(s)	11, 79, 91, 169, 214, 290, 302, 309, 325
DdeI	CTNAG	2 cut(s)	41, 260
DpnI	GATC	4 cut(s)	75, 114, 189, 224
DpnII	GATC	4 cut(s)	73, 112, 187, 222
EaeI	YGGCCR	2 cut(s)	288, 323
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	16, 102
Fnu4HI	GCNGC	3 cut(s)	167, 330, 333
FokI	GGATG	2 cut(s)	263, 298
Fsp4HI	GCNGC	3 cut(s)	167, 330, 333
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	167, 330, 333
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	79, 290, 309, 325
HapII	CCGG	1 cut(s)	326
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	73, 117, 250
Hpy188III	TCNNGA	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	78, 168, 299
HpyCH4IV	ACGT	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 326
HpyF3I	CTNAG	2 cut(s)	41, 260
HpySE526I	ACGT	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	73, 112, 187, 222
LmnI	GCTCC	2 cut(s)	8, 51
LpnPI	CCDG	8 cut(s)	3, 30, 89, 95, 116, 141, 268, 339
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	146
MalI	GATC	4 cut(s)	75, 114, 189, 224
MboI	GATC	4 cut(s)	73, 112, 187, 222
MboII	GAAGA	2 cut(s)	237, 266
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	102, 130, 135, 144, 236, 320
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	18, 104
MvaI	CCWGG	2 cut(s)	18, 104
MwoI	GCNNNNNNNGC	2 cut(s)	211, 326
NaeI	GCCGGC	1 cut(s)	327
NdeII	GATC	4 cut(s)	73, 112, 187, 222
NgoMIV	GCCGGC	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	168, 331, 334
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	16, 102
PspGI	CCWGG	2 cut(s)	16, 102
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	78
SatI	GCNGC	3 cut(s)	167, 330, 333
Sau3AI	GATC	4 cut(s)	73, 112, 187, 222
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	18, 104
SetI	ASST	6 cut(s)	13, 70, 105, 149, 171, 216
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	256
SfuI	TTCGAA	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	24
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	3 cut(s)	5, 205, 329
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	16, 102
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	172, 190, 216
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	166, 332
TspDTI	ATGAA	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.