Rh7BG352300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002265
Physical Location & Seq
Forward (+)
36835179 .. 36835361
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG352300.1

Sequence Viewer

Length: 183 bp
ATGAAAAAGATGGAGGAGAAACTCACTCAGTTACGAAAGAAGGAGGAGCCCACCAAGAAGTCCGCTCACGGTGACGCCAAGATTTCAGCAAGAGGGAGCTCGGGATCCGTGCCGGAGAATGGCCAGAAGAAAGCCAAGAAGGTCATAGATGAAAGCTGGAGGTCCCAAATAGAGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.75

Weight (kDa)

9.93

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 1 cut(s) 63
AclWI GGATC 2 cut(s) 99, 112
AcoI YGGCCR 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 99, 156
AluI AGCT 2 cut(s) 99, 156
Alw21I GWGCWC 1 cut(s) 101
AlwI GGATC 2 cut(s) 99, 112
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 123
BamHI GGATCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 51, 101
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 1 cut(s) 4
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 48, 106, 164
BpmI CTGGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 29, 59
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 51, 101
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 48, 106, 164
BspPI GGATC 2 cut(s) 99, 112
BsrBI CCGCTC 1 cut(s) 65
BssMI GATC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 27
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 83
CviJI RGCY 5 cut(s) 49, 99, 123, 134, 156
CviKI_1 RGCY 5 cut(s) 49, 99, 123, 134, 156
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 51, 101
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 51, 101
FaiI YATR 1 cut(s) 146
FaqI GGGAC 1 cut(s) 148
FriOI GRGCYC 2 cut(s) 51, 101
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 34, 133
HpyCH4III ACNGT 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 46, 96
LpnPI CCDG 3 cut(s) 126, 137, 142
MaeIII GTNAC 2 cut(s) 30, 71
MalI GATC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 65
MboI GATC 1 cut(s) 104
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 51, 101
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
MnlI CCTC 4 cut(s) 7, 37, 86, 153
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 1 cut(s) 113
NdeII GATC 1 cut(s) 104
NlaIV GGNNCC 3 cut(s) 48, 106, 164
NmuCI GTSAC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 48, 106, 164
PspPI GGNCC 1 cut(s) 162
PspPPI RGGWCCY 1 cut(s) 162
PsuI RGATCY 1 cut(s) 104
SacI GAGCTC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 162
SduI GDGCHC 2 cut(s) 51, 101
SetI ASST 4 cut(s) 101, 144, 158, 164
SinI GGWCC 1 cut(s) 162
SsiI CCGC 1 cut(s) 63
SstI GAGCTC 1 cut(s) 101
TaaI ACNGT 1 cut(s) 71
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 17, 165
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.