Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

13138263 .. 13141121

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTACAGTTTTTCCTCATCAGAGATCTCTCGCAACAAGCAGCTTCAACAGTCCCAAGGTCAAATGGCAAAGCAGAAGTAAATACTGCTATTTTGATTGTGGAATCTATGCTGAGTAAAGTGATGGAAGAATTTCAGCATCGCCTAGCAAGCCAAACCGAACTGGTAAAAGCACCTACTAAAGATAGCCCTGGCCCTGACTCAGACTTTGTATCTCTTTCAGAACCTGGTTCTGGTGATATGAAGTATGAAGAGAGAGCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATCAAACATATGACCATCAAGAGGGATCAAAAGGGCAGTTTATGAAACATAAAATGTTGTTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATACTCTATATGATACAAAAGCAGGAATGAAATTTCTACAGAGGAAGTGCCAGGAGGAGTTCAACAACCTAGGTACGCACCTGCATGGTTTGGCTCATGCAGCATCAGGGTACCAGAAAGTTCTTGATGGAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGCAATATAAGGGTATATTGCCGAGTGCGTCCTCCATCGCCTGGGCAAACAAATAGTTCCAATACTTATCATCACATAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

214

Amino Acids

24.16

Weight (kDa)

8.27

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	174 - 201	8.2e-08	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	477
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	498
AccB7I	CCANNNNNTGG	1 cut(s)	596
AclWI	GGATC	2 cut(s)	325, 555
AcsI	RAATTY	2 cut(s)	131, 419
AfaI	GTAC	2 cut(s)	463, 500
AfiI	CCNNNNNNNGG	3 cut(s)	233, 313, 596
AgsI	TTSAA	4 cut(s)	48, 356, 385, 451
AjnI	CCWGG	4 cut(s)	190, 226, 438, 595
AluBI	AGCT	2 cut(s)	44, 260
AluI	AGCT	2 cut(s)	44, 260
AlwI	GGATC	2 cut(s)	325, 555
AlwNI	CAGNNNCTG	2 cut(s)	227, 550
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	41, 260, 488
ApoI	RAATTY	2 cut(s)	131, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	132
Asp718I	GGTACC	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	248
AvrII	CCTAGG	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	53, 247, 500
BccI	CCATC	4 cut(s)	118, 315, 509, 598
BciT130I	CCWGG	4 cut(s)	192, 228, 440, 597
BfaI	CTAG	2 cut(s)	146, 458
BfmI	CTRYAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	477
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	42, 261, 489
BlnI	CCTAGG	1 cut(s)	457
BlsI	GCNGC	3 cut(s)	43, 262, 490
Bme1390I	CCNGG	4 cut(s)	192, 228, 440, 597
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	4 cut(s)	192, 228, 440, 597
BmsI	GCATC	2 cut(s)	148, 500
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	56, 190, 457, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 313, 596
Bse1I	ACTGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	4 cut(s)	192, 228, 440, 597
BseDI	CCNNGG	4 cut(s)	56, 190, 457, 596
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	233, 313, 596
BseMII	CTCAG	2 cut(s)	104, 216
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	53, 247, 500
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	233, 313, 596
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	25, 317, 547
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	105, 215
BspLI	GGNNCC	1 cut(s)	500
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	325, 555
BspT107I	GGYRCC	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	56, 190, 457, 596
BssMI	GATC	3 cut(s)	25, 317, 547
BssT1I	CCWWGG	2 cut(s)	56, 457
Bst2UI	CCWGG	4 cut(s)	192, 228, 440, 597
Bst4CI	ACNGT	2 cut(s)	9, 52
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	113, 202
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	28, 320, 550
BstMBI	GATC	3 cut(s)	25, 317, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 488
BstNI	CCWGG	4 cut(s)	192, 228, 440, 597
BstSCI	CCNGG	4 cut(s)	190, 226, 438, 595
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	53, 247, 500
BstX2I	RGATCY	2 cut(s)	25, 547
BstYI	RGATCY	2 cut(s)	25, 547
BsuRI	GGCC	1 cut(s)	195
BtgZI	GCGATG	2 cut(s)	125, 576
BtsCI	GGATG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	2 cut(s)	227, 550
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	462, 499
CviAII	CATG	2 cut(s)	473, 485
CviJI	RGCY	6 cut(s)	44, 153, 189, 195, 260, 482
CviKI_1	RGCY	6 cut(s)	44, 153, 189, 195, 260, 482
CviQI	GTAC	2 cut(s)	462, 499
DdeI	CTNAG	2 cut(s)	113, 202
DpnI	GATC	3 cut(s)	27, 319, 549
DpnII	GATC	3 cut(s)	25, 317, 547
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	56, 457
EcoRII	CCWGG	4 cut(s)	190, 226, 438, 595
EcoT14I	CCWWGG	2 cut(s)	56, 457
ErhI	CCWWGG	2 cut(s)	56, 457
FaeI	CATG	2 cut(s)	476, 488
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	472, 484
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	42, 261, 489
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	42, 261, 489
FspBI	CTAG	2 cut(s)	146, 458
GluI	GCNGC	3 cut(s)	42, 261, 489
HaeIII	GGCC	1 cut(s)	195
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	476, 488
HinfI	GANTC	3 cut(s)	104, 200, 265
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	4 cut(s)	23, 205, 223, 552
Hpy188III	TCNNGA	3 cut(s)	311, 377, 512
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	9, 52
HpyCH4V	TGCA	4 cut(s)	291, 472, 488, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 488
HpyF3I	CTNAG	2 cut(s)	113, 202
Hsp92II	CATG	2 cut(s)	476, 488
KpnI	GGTACC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	25, 317, 547
Lsp1109I	GCAGC	3 cut(s)	53, 247, 500
LweI	GCATC	2 cut(s)	148, 500
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	2 cut(s)	146, 458
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	27, 319, 549
MboI	GATC	3 cut(s)	25, 317, 547
MboII	GAAGA	2 cut(s)	140, 263
MflI	RGATCY	2 cut(s)	25, 547
MluCI	AATT	3 cut(s)	131, 380, 419
MlyI	GAGTC	2 cut(s)	194, 259
MnlI	CCTC	5 cut(s)	26, 307, 423, 436, 597
MroXI	GAANNNNTTC	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	471, 633
MspR9I	CCNGG	4 cut(s)	192, 228, 440, 597
MvaI	CCWGG	4 cut(s)	192, 228, 440, 597
MwoI	GCNNNNNNNGC	2 cut(s)	150, 488
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	25, 317, 547
NlaIII	CATG	2 cut(s)	476, 488
NlaIV	GGNNCC	1 cut(s)	500
NmeAIII	GCCGAG	1 cut(s)	602
PaqCI	CACCTGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	43, 262, 490
PleI	GAGTC	2 cut(s)	194, 259
PpsI	GAGTC	2 cut(s)	194, 259
Psp6I	CCWGG	4 cut(s)	190, 226, 438, 595
PspGI	CCWGG	4 cut(s)	190, 226, 438, 595
PspN4I	GGNNCC	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	2 cut(s)	227, 550
PsuI	RGATCY	2 cut(s)	25, 547
RsaI	GTAC	2 cut(s)	463, 500
RsaNI	GTAC	2 cut(s)	462, 499
RseI	CAYNNNNRTG	2 cut(s)	471, 633
SatI	GCNGC	3 cut(s)	42, 261, 489
Sau3AI	GATC	3 cut(s)	25, 317, 547
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	194, 259
ScrFI	CCNGG	4 cut(s)	192, 228, 440, 597
SetI	ASST	8 cut(s)	46, 62, 178, 229, 262, 459, 463, 471
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	148, 500
SfcI	CTRYAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	471, 633
Sse9I	AATT	3 cut(s)	131, 380, 419
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	146, 458
StyD4I	CCNGG	4 cut(s)	190, 226, 438, 595
StyI	CCWWGG	2 cut(s)	56, 457
TaaI	ACNGT	2 cut(s)	9, 52
TasI	AATT	3 cut(s)	131, 380, 419
TfiI	GAWTC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	41, 260, 488
TspDTI	ATGAA	4 cut(s)	257, 264, 350, 431
Van91I	CCANNNNNTGG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	131, 419
XmaJI	CCTAGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	146, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.