Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

46622986 .. 46625779

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAAACTGAGGAGGCATTTTTGGTAGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGACATCTATCGGAAGAAGAAGGATGCAAGAGTCTGTGAAGGCTGCAGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTAACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTGACTCTGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAATACTTCGAAAACGTCCGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGGGAGGAAAATCTGCAAGTACAAGGATTGTCAACTGTGTTCTAGCACTAAAATCATATAGTGACTGGAAACAAGCAGGCGGAAGTGGATCATGGAAATTTGTTGGAAACTTGAAACCACCTATCTCTGGGAAACCCTTTCTGAGTAAAAATTCTGAACCATTTATGAGTTATTTTACAAGGACCTTATCATGGAGTGAAAGATCGCAAGATAGTTTCTCCAGTGAAGACCCCAATGAAGCAAGTTCTTCTCATTCCTTACACAAGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGACTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGGAATTGAAACATAATCATGATGATACAAAAGAAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAACATAGCCACAACACATCGGTCGCTGCTGGATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGATACCAGCTTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

374

Amino Acids

41.02

Weight (kDa)

5.59

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	975
Acc36I	ACCTGC	1 cut(s)	975
AciI	CCGC	2 cut(s)	561, 1073
AclWI	GGATC	2 cut(s)	216, 577
AcsI	RAATTY	4 cut(s)	421, 578, 631, 786
AfaI	GTAC	4 cut(s)	102, 502, 753, 935
AfiI	CCNNNNNNNGG	4 cut(s)	329, 608, 672, 863
AflIII	ACRYGT	1 cut(s)	289
AjnI	CCWGG	4 cut(s)	820, 856, 936, 1090
AluBI	AGCT	5 cut(s)	74, 204, 386, 748, 1112
AluI	AGCT	5 cut(s)	74, 204, 386, 748, 1112
Alw26I	GTCTC	1 cut(s)	1050
AlwI	GGATC	2 cut(s)	216, 577
AoxI	GGCC	2 cut(s)	349, 823
ApeKI	GCWGC	7 cut(s)	71, 198, 201, 383, 986, 1040, 1085
ApoI	RAATTY	4 cut(s)	421, 578, 631, 786
ArsI	GACNNNNNNTTYG	4 cut(s)	137, 169, 1049, 1081
Asp700I	GAANNNNTTC	1 cut(s)	786
AspA2I	CCTAGG	1 cut(s)	955
AspS9I	GGNCC	3 cut(s)	350, 663, 824
AsuHPI	GGTGA	1 cut(s)	878
AsuII	TTCGAA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	663
AvrII	CCTAGG	1 cut(s)	955
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	7 cut(s)	83, 185, 213, 395, 998, 1027, 1072
BccI	CCATC	1 cut(s)	850
BciT130I	CCWGG	4 cut(s)	822, 858, 938, 1092
BciVI	GTATCC	3 cut(s)	989, 1040, 1089
BcoDI	GTCTC	1 cut(s)	1050
BfaI	CTAG	4 cut(s)	524, 749, 956, 1120
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	975
BfuI	GTATCC	3 cut(s)	989, 1040, 1089
BisI	GCNGC	7 cut(s)	72, 199, 202, 384, 987, 1041, 1086
BlnI	CCTAGG	1 cut(s)	955
BlsI	GCNGC	7 cut(s)	73, 200, 203, 385, 988, 1042, 1087
Bme1390I	CCNGG	4 cut(s)	822, 858, 938, 1092
Bme18I	GGWCC	1 cut(s)	663
BmgT120I	GGNCC	3 cut(s)	350, 663, 824
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	4 cut(s)	822, 858, 938, 1092
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	169, 998
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	3 cut(s)	267, 685, 1074
Bpu14I	TTCGAA	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	820, 955, 1091
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 608, 672, 863
Bse1I	ACTGG	4 cut(s)	83, 130, 551, 702
Bse3DI	GCAATG	1 cut(s)	1082
BseBI	CCWGG	4 cut(s)	822, 858, 938, 1092
BseDI	CCNNGG	3 cut(s)	820, 955, 1091
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	4 cut(s)	329, 608, 672, 863
BseMI	GCAATG	1 cut(s)	1082
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	4 cut(s)	83, 130, 551, 702
BseRI	GAGGAG	2 cut(s)	26, 123
BseXI	GCAGC	7 cut(s)	83, 185, 213, 395, 998, 1027, 1072
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	1038
BshFI	GGCC	2 cut(s)	351, 825
BsiEI	CGRYCG	1 cut(s)	1038
BslI	CCNNNNNNNGG	4 cut(s)	329, 608, 672, 863
BsmAI	GTCTC	1 cut(s)	1050
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	351, 825
Bsp119I	TTCGAA	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	28, 139, 208, 569, 683
BspACI	CCGC	2 cut(s)	561, 1073
BspANI	GGCC	2 cut(s)	351, 825
BspCNI	CTCAG	1 cut(s)	615
BspHI	TCATGA	2 cut(s)	136, 892
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	975
BspPI	GGATC	2 cut(s)	216, 577
BspT104I	TTCGAA	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	1082
BsrI	ACTGG	4 cut(s)	83, 130, 551, 702
BssECI	CCNNGG	3 cut(s)	820, 955, 1091
BssMI	GATC	5 cut(s)	28, 139, 208, 569, 683
BssT1I	CCWWGG	1 cut(s)	955
Bst2UI	CCWGG	4 cut(s)	822, 858, 938, 1092
Bst4CI	ACNGT	3 cut(s)	329, 518, 1061
BstBAI	YACGTR	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	5 cut(s)	9, 104, 212, 276, 623
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	5 cut(s)	31, 142, 211, 572, 686
BstMAI	GTCTC	1 cut(s)	1050
BstMBI	GATC	5 cut(s)	28, 139, 208, 569, 683
BstMCI	CGRYCG	1 cut(s)	1038
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 986
BstNI	CCWGG	4 cut(s)	822, 858, 938, 1092
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	820, 856, 936, 1090
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	7 cut(s)	83, 185, 213, 395, 998, 1027, 1072
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	3 cut(s)	989, 1040, 1089
BsuRI	GGCC	2 cut(s)	351, 825
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	4 cut(s)	90, 334, 709, 1066
BveI	ACCTGC	1 cut(s)	975
Cac8I	GCNNGC	1 cut(s)	559
CciI	TCATGA	2 cut(s)	136, 892
Cfr13I	GGNCC	3 cut(s)	350, 663, 824
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	4 cut(s)	101, 501, 752, 934
CviAII	CATG	9 cut(s)	67, 137, 270, 290, 573, 672, 893, 971, 983
CviQI	GTAC	4 cut(s)	101, 501, 752, 934
DdeI	CTNAG	5 cut(s)	9, 104, 212, 276, 623
DpnI	GATC	5 cut(s)	30, 141, 210, 571, 685
DpnII	GATC	5 cut(s)	28, 139, 208, 569, 683
EciI	GGCGGA	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	663
EcoO109I	RGGNCCY	2 cut(s)	350, 663
EcoRII	CCWGG	4 cut(s)	820, 856, 936, 1090
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	955
FaeI	CATG	9 cut(s)	70, 140, 273, 293, 576, 675, 896, 974, 986
FatI	CATG	9 cut(s)	66, 136, 269, 289, 572, 671, 892, 970, 982
FauNDI	CATATG	2 cut(s)	302, 1101
Fnu4HI	GCNGC	7 cut(s)	72, 199, 202, 384, 987, 1041, 1086
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	7 cut(s)	72, 199, 202, 384, 987, 1041, 1086
FspBI	CTAG	4 cut(s)	524, 749, 956, 1120
GluI	GCNGC	7 cut(s)	72, 199, 202, 384, 987, 1041, 1086
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	3 cut(s)	267, 685, 1074
HaeIII	GGCC	2 cut(s)	351, 825
Hin1II	CATG	9 cut(s)	70, 140, 273, 293, 576, 675, 896, 974, 986
HincII	GTYRAC	2 cut(s)	282, 514
HindII	GTYRAC	2 cut(s)	282, 514
HinfI	GANTC	6 cut(s)	95, 186, 316, 359, 830, 836
HpaI	GTTAAC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	3 cut(s)	39, 282, 514
Hpy188I	TCNGA	8 cut(s)	168, 208, 419, 472, 624, 637, 835, 853
Hpy188III	TCNNGA	8 cut(s)	116, 137, 143, 246, 374, 893, 993, 1010
Hpy8I	GTNNAC	3 cut(s)	39, 282, 514
HpyAV	CCTTC	6 cut(s)	169, 188, 226, 341, 816, 902
HpyCH4III	ACNGT	3 cut(s)	329, 518, 1061
HpyCH4IV	ACGT	2 cut(s)	414, 754
HpyCH4V	TGCA	8 cut(s)	182, 201, 306, 497, 964, 970, 986, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 986
HpyF3I	CTNAG	5 cut(s)	9, 104, 212, 276, 623
HpySE526I	ACGT	2 cut(s)	414, 754
Hsp92II	CATG	9 cut(s)	70, 140, 273, 293, 576, 675, 896, 974, 986
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	28, 139, 208, 569, 683
LmnI	GCTCC	1 cut(s)	1093
Lsp1109I	GCAGC	7 cut(s)	83, 185, 213, 395, 998, 1027, 1072
LweI	GCATC	2 cut(s)	169, 998
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	4 cut(s)	524, 749, 956, 1120
MaeII	ACGT	2 cut(s)	414, 754
MaeIII	GTNAC	2 cut(s)	356, 542
MalI	GATC	5 cut(s)	30, 141, 210, 571, 685
MboI	GATC	5 cut(s)	28, 139, 208, 569, 683
MboII	GAAGA	6 cut(s)	181, 184, 719, 720, 794, 1025
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	7 cut(s)	254, 421, 443, 578, 631, 786, 878
MlyI	GAGTC	4 cut(s)	195, 353, 824, 830
MmeI	TCCRAC	2 cut(s)	479, 565
MnlI	CCTC	9 cut(s)	4, 7, 101, 112, 242, 433, 478, 479, 934
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	3 cut(s)	294, 891, 969
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	4 cut(s)	822, 858, 938, 1092
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	4 cut(s)	822, 858, 938, 1092
MwoI	GCNNNNNNNGC	2 cut(s)	392, 986
NdeI	CATATG	2 cut(s)	302, 1101
NdeII	GATC	5 cut(s)	28, 139, 208, 569, 683
NlaIII	CATG	9 cut(s)	70, 140, 273, 293, 576, 675, 896, 974, 986
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	356, 542
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	408
PagI	TCATGA	2 cut(s)	136, 892
PaqCI	CACCTGC	1 cut(s)	975
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	2 cut(s)	95, 316
PkrI	GCNGC	7 cut(s)	73, 200, 203, 385, 988, 1042, 1087
PleI	GAGTC	4 cut(s)	194, 353, 824, 830
PpsI	GAGTC	4 cut(s)	194, 353, 824, 830
Ppu21I	YACGTR	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	663
PscI	ACATGT	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	663
Psp6I	CCWGG	4 cut(s)	820, 856, 936, 1090
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	820, 856, 936, 1090
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	3 cut(s)	350, 663, 824
PspPPI	RGGWCCY	1 cut(s)	663
PsrI	GAACNNNNNNTAC	2 cut(s)	744, 776
PstI	CTGCAG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	4 cut(s)	102, 502, 753, 935
RsaNI	GTAC	4 cut(s)	101, 501, 752, 934
RseI	CAYNNNNRTG	3 cut(s)	294, 891, 969
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	7 cut(s)	72, 199, 202, 384, 987, 1041, 1086
Sau3AI	GATC	5 cut(s)	28, 139, 208, 569, 683
Sau96I	GGNCC	3 cut(s)	350, 663, 824
SchI	GAGTC	4 cut(s)	195, 353, 824, 830
ScrFI	CCNGG	4 cut(s)	822, 858, 938, 1092
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	2 cut(s)	169, 998
SfcI	CTRYAG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	408
SinI	GGWCC	1 cut(s)	663
SmiMI	CAYNNNNRTG	3 cut(s)	294, 891, 969
Sse9I	AATT	7 cut(s)	254, 421, 443, 578, 631, 786, 878
SsiI	CCGC	2 cut(s)	561, 1073
SspMI	CTAG	4 cut(s)	524, 749, 956, 1120
StyD4I	CCNGG	4 cut(s)	820, 856, 936, 1090
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	3 cut(s)	329, 518, 1061
TaiI	ACGT	2 cut(s)	417, 757
TaqI	TCGA	2 cut(s)	144, 408
TaqII	GACCGA	1 cut(s)	1024
TasI	AATT	7 cut(s)	254, 421, 443, 578, 631, 786, 878
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	95, 316
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	4 cut(s)	90, 334, 709, 1066
TseFI	GTSAC	2 cut(s)	356, 542
TseI	GCWGC	7 cut(s)	71, 198, 201, 383, 986, 1040, 1085
Tsp45I	GTSAC	2 cut(s)	356, 542
TspDTI	ATGAA	5 cut(s)	108, 245, 732, 929, 944
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	4 cut(s)	90, 334, 709, 1066
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	4 cut(s)	421, 578, 631, 786
XceI	RCATGY	1 cut(s)	293
XmaJI	CCTAGG	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	4 cut(s)	524, 749, 956, 1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.