Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

8868656 .. 8870360

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGATCGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAGTTCTTCTCATTCCTTACACAGGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGACTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTCAAGAACATCGCCACAACACATCGGTCGCTGCTGTTATTTTAGGTGTCTTGGACATTCTAATCTTCAGATTCCTCCATTTGTTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

151

Amino Acids

16.99

Weight (kDa)

6.29

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	108, 290
AfiI	CCNNNNNNNGG	3 cut(s)	27, 99, 218
AgsI	TTSAA	3 cut(s)	238, 304, 368
AjnI	CCWGG	3 cut(s)	175, 211, 291
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	341, 395
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	141
AspA2I	CCTAGG	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	18, 179
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	353, 382
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	177, 213, 293
BciVI	GTATCC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	104, 311
BfuAI	ACCTGC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	344
BisI	GCNGC	2 cut(s)	342, 396
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	343, 397
Bme1390I	CCNGG	3 cut(s)	177, 213, 293
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	18, 179
BmrFI	CCNGG	3 cut(s)	177, 213, 293
BmsI	GCATC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	175, 310
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 99, 218
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	177, 213, 293
BseDI	CCNNGG	2 cut(s)	175, 310
BseLI	CCNNNNNNNGG	3 cut(s)	27, 99, 218
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	353, 382
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	27, 99, 218
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	38, 64
BspANI	GGCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	175, 310
BssMI	GATC	2 cut(s)	38, 64
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	3 cut(s)	177, 213, 293
BstBAI	YACGTR	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	41, 67
BstMBI	GATC	2 cut(s)	38, 64
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	3 cut(s)	177, 213, 293
BstSCI	CCNGG	3 cut(s)	175, 211, 291
BstV1I	GCAGC	2 cut(s)	353, 382
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	18, 179
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	107, 289
CviAII	CATG	3 cut(s)	27, 326, 338
CviJI	RGCY	5 cut(s)	103, 174, 180, 309, 335
CviKI_1	RGCY	5 cut(s)	103, 174, 180, 309, 335
CviQI	GTAC	2 cut(s)	107, 289
DpnI	GATC	2 cut(s)	40, 66
DpnII	GATC	2 cut(s)	38, 64
Eco130I	CCWWGG	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	3 cut(s)	175, 211, 291
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	30, 329, 341
FaiI	YATR	7 cut(s)	28, 243, 250, 252, 317, 327, 339
FatI	CATG	3 cut(s)	26, 325, 337
Fnu4HI	GCNGC	2 cut(s)	342, 396
Fsp4HI	GCNGC	2 cut(s)	342, 396
FspBI	CTAG	2 cut(s)	104, 311
GluI	GCNGC	2 cut(s)	342, 396
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	30, 329, 341
HinfI	GANTC	3 cut(s)	185, 191, 435
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	190, 208, 434
Hpy188III	TCNNGA	2 cut(s)	348, 368
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	319, 325, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	30, 329, 341
Kzo9I	GATC	2 cut(s)	38, 64
Lsp1109I	GCAGC	2 cut(s)	353, 382
LweI	GCATC	1 cut(s)	353
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	2 cut(s)	104, 311
MaeII	ACGT	1 cut(s)	109
MalI	GATC	2 cut(s)	40, 66
MboI	GATC	2 cut(s)	38, 64
MboII	GAAGA	5 cut(s)	74, 75, 149, 356, 421
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	141, 233
MlyI	GAGTC	2 cut(s)	179, 185
MnlI	CCTC	2 cut(s)	289, 449
MroXI	GAANNNNTTC	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	177, 213, 293
MvaI	CCWGG	3 cut(s)	177, 213, 293
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	2 cut(s)	38, 64
NlaIII	CATG	3 cut(s)	30, 329, 341
PaqCI	CACCTGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	343, 397
PleI	GAGTC	2 cut(s)	179, 185
PpsI	GAGTC	2 cut(s)	179, 185
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	175, 211, 291
PspGI	CCWGG	3 cut(s)	175, 211, 291
PspPI	GGNCC	2 cut(s)	18, 179
PspPPI	RGGWCCY	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	108, 290
RsaNI	GTAC	2 cut(s)	107, 289
RseI	CAYNNNNRTG	1 cut(s)	324
SatI	GCNGC	2 cut(s)	342, 396
Sau3AI	GATC	2 cut(s)	38, 64
Sau96I	GGNCC	2 cut(s)	18, 179
SchI	GAGTC	2 cut(s)	179, 185
ScrFI	CCNGG	3 cut(s)	177, 213, 293
SetI	ASST	7 cut(s)	23, 112, 163, 214, 316, 324, 412
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	141, 233
SspMI	CTAG	2 cut(s)	104, 311
StyD4I	CCNGG	3 cut(s)	175, 211, 291
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	112
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	2 cut(s)	141, 233
TfiI	GAWTC	1 cut(s)	435
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	341, 395
TspDTI	ATGAA	3 cut(s)	87, 284, 299
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	141
XmaJI	CCTAGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	104, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.