Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

73410620 .. 73415115

Gene Structure 4496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATTATATAGACAGGTTTCAAGACCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGGATTTTTGGTGGATCAAGGGTTTAGTGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTGGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGGACATCTATTGGAAGAAGAAGGATGCAAGAGTCTATGAAGGCTGCGGCTCGGATCTTAGAATGCCAAAGAAAATGAAGGTTTCAACTTCTGGAGGGCAATTCCTTTGTAAATCATGTGCTAAGTTGACAAAACATGTTTGTGGGATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTATGACTCTGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGGGAGGAAAATCTGCAAGTACAAGGATTGTCAACTGTGTTCTAGCACTAAAATCATATAGTGACTGGAAAAAAGCAGGCGGAAGTGGATCATGGAAATTTGTTGGAAACTTGAAACCGCCTATCTCTGGGAAACCCTTTCTGCGAAAAAATTCTGAACCATTCATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGATCGCAAGATAGTTTCTCCTGTGAAGATCCCAATGAAGCAAGTTCTTCTCATTCCTTACACAAGCTAGCACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACATTCCAAAGATAGCCCTGGCCCTGACTCTGACTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGAATGAAGAGAAAGCTGCGACTGAAATAAAGAAGGATGATTGTTGCAATCAAACATATGACCATCAAGAGGGATCAAAAGAAAAATATTTAGGAATTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

351

Amino Acids

38.91

Weight (kDa)

5.07

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	276, 636, 674
AclWI	GGATC	5 cut(s)	102, 291, 652, 779, 1030
AcsI	RAATTY	4 cut(s)	496, 653, 706, 861
AcvI	CACGTG	1 cut(s)	830
AfaI	GTAC	3 cut(s)	168, 479, 577
AfiI	CCNNNNNNNGG	5 cut(s)	404, 683, 747, 938, 1018
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	8 cut(s)	23, 182, 198, 315, 422, 539, 670, 1049
AjnI	CCWGG	3 cut(s)	228, 895, 931
AluBI	AGCT	4 cut(s)	140, 461, 823, 965
AluI	AGCT	4 cut(s)	140, 461, 823, 965
AlwI	GGATC	5 cut(s)	102, 291, 652, 779, 1030
AoxI	GGCC	2 cut(s)	424, 898
ApeKI	GCWGC	4 cut(s)	137, 273, 458, 965
ApoI	RAATTY	4 cut(s)	496, 653, 706, 861
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	2 cut(s)	706, 861
AspS9I	GGNCC	4 cut(s)	226, 425, 738, 899
AsuHPI	GGTGA	1 cut(s)	953
AsuII	TTCGAA	1 cut(s)	483
AsuNHI	GCTAGC	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	226, 738
BbrPI	CACGTG	1 cut(s)	830
BbvI	GCAGC	4 cut(s)	149, 260, 470, 952
BccI	CCATC	3 cut(s)	61, 925, 1020
BciT130I	CCWGG	3 cut(s)	230, 897, 933
BfaI	CTAG	2 cut(s)	599, 824
BisI	GCNGC	5 cut(s)	138, 274, 277, 459, 966
BlsI	GCNGC	5 cut(s)	139, 275, 278, 460, 967
BmcAI	AGTACT	1 cut(s)	479
Bme1390I	CCNGG	3 cut(s)	230, 897, 933
Bme18I	GGWCC	2 cut(s)	226, 738
BmgT120I	GGNCC	4 cut(s)	226, 425, 738, 899
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	230, 897, 933
BmrI	ACTGGG	2 cut(s)	47, 143
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	827
BmuI	ACTGGG	2 cut(s)	47, 143
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	5 cut(s)	404, 683, 747, 938, 1018
Bse1I	ACTGG	5 cut(s)	28, 42, 149, 196, 626
BseBI	CCWGG	3 cut(s)	230, 897, 933
BseDI	CCNNGG	1 cut(s)	895
BseGI	GGATG	2 cut(s)	259, 991
BseLI	CCNNNNNNNGG	5 cut(s)	404, 683, 747, 938, 1018
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	5 cut(s)	28, 42, 149, 196, 626
BseRI	GAGGAG	2 cut(s)	92, 189
BseXI	GCAGC	4 cut(s)	149, 260, 470, 952
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	426, 900
BslI	CCNNNNNNNGG	5 cut(s)	404, 683, 747, 938, 1018
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	426, 900
Bsp119I	TTCGAA	1 cut(s)	483
Bsp143I	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
BspACI	CCGC	3 cut(s)	276, 636, 674
BspANI	GGCC	2 cut(s)	426, 900
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	2 cut(s)	202, 720
BspLI	GGNNCC	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	827
BspPI	GGATC	5 cut(s)	102, 291, 652, 779, 1030
BspT104I	TTCGAA	1 cut(s)	483
BsrI	ACTGG	5 cut(s)	28, 42, 149, 196, 626
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
Bst2UI	CCWGG	3 cut(s)	230, 897, 933
Bst4CI	ACNGT	2 cut(s)	404, 593
Bst6I	CTCTTC	1 cut(s)	951
BstBAI	YACGTR	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	50, 634, 825
BstDEI	CTNAG	4 cut(s)	75, 170, 287, 351
BstF5I	GGATG	2 cut(s)	259, 991
BstKTI	GATC	7 cut(s)	97, 208, 286, 647, 761, 787, 1025
BstMBI	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	3 cut(s)	230, 897, 933
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	228, 895, 931
BstV1I	GCAGC	4 cut(s)	149, 260, 470, 952
BstX2I	RGATCY	2 cut(s)	283, 784
BstYI	RGATCY	2 cut(s)	283, 784
BsuRI	GGCC	2 cut(s)	426, 900
BtsCI	GGATG	2 cut(s)	259, 991
BtsIMutI	CAGTG	2 cut(s)	156, 409
Cac8I	GCNNGC	3 cut(s)	50, 634, 825
CciI	TCATGA	2 cut(s)	202, 720
Cfr13I	GGNCC	4 cut(s)	226, 425, 738, 899
CsiI	ACCWGGT	1 cut(s)	931
Csp6I	GTAC	3 cut(s)	167, 478, 576
CviAII	CATG	7 cut(s)	133, 203, 345, 365, 648, 721, 747
CviQI	GTAC	3 cut(s)	167, 478, 576
DdeI	CTNAG	4 cut(s)	75, 170, 287, 351
DpnI	GATC	7 cut(s)	96, 207, 285, 646, 760, 786, 1024
DpnII	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
EciI	GGCGGA	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	2 cut(s)	226, 738
Eco72I	CACGTG	1 cut(s)	830
EcoO109I	RGGNCCY	2 cut(s)	425, 738
EcoRII	CCWGG	3 cut(s)	228, 895, 931
EcoRV	GATATC	1 cut(s)	946
FaeI	CATG	7 cut(s)	136, 206, 348, 368, 651, 724, 750
FatI	CATG	7 cut(s)	132, 202, 344, 364, 647, 720, 746
FauNDI	CATATG	1 cut(s)	1006
Fnu4HI	GCNGC	5 cut(s)	138, 274, 277, 459, 966
FokI	GGATG	2 cut(s)	266, 998
Fsp4HI	GCNGC	5 cut(s)	138, 274, 277, 459, 966
FspBI	CTAG	2 cut(s)	599, 824
GluI	GCNGC	5 cut(s)	138, 274, 277, 459, 966
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	426, 900
Hin1II	CATG	7 cut(s)	136, 206, 348, 368, 651, 724, 750
HincII	GTYRAC	2 cut(s)	357, 589
HindII	GTYRAC	2 cut(s)	357, 589
HinfI	GANTC	6 cut(s)	161, 261, 391, 434, 905, 911
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	3 cut(s)	226, 357, 589
Hpy188I	TCNGA	7 cut(s)	34, 283, 494, 547, 712, 910, 928
Hpy8I	GTNNAC	3 cut(s)	226, 357, 589
HpyAV	CCTTC	5 cut(s)	244, 263, 301, 416, 976
HpyCH4III	ACNGT	2 cut(s)	404, 593
HpyCH4IV	ACGT	2 cut(s)	489, 829
HpyCH4V	TGCA	5 cut(s)	48, 257, 381, 572, 996
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	4 cut(s)	75, 170, 287, 351
HpySE526I	ACGT	2 cut(s)	489, 829
Hsp92II	CATG	7 cut(s)	136, 206, 348, 368, 651, 724, 750
Kzo9I	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
Lsp1109I	GCAGC	4 cut(s)	149, 260, 470, 952
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	931
MaeI	CTAG	2 cut(s)	599, 824
MaeII	ACGT	2 cut(s)	489, 829
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	7 cut(s)	96, 207, 285, 646, 760, 786, 1024
MboI	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
MboII	GAAGA	6 cut(s)	256, 259, 794, 795, 869, 968
MflI	RGATCY	2 cut(s)	283, 784
MluCI	AATT	7 cut(s)	329, 496, 518, 653, 706, 861, 1044
MlyI	GAGTC	4 cut(s)	270, 428, 899, 905
MmeI	TCCRAC	2 cut(s)	554, 640
MnlI	CCTC	9 cut(s)	70, 73, 167, 178, 317, 508, 553, 554, 1012
MroXI	GAANNNNTTC	2 cut(s)	706, 861
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	3 cut(s)	230, 897, 933
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	3 cut(s)	230, 897, 933
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
NheI	GCTAGC	1 cut(s)	823
NlaIII	CATG	7 cut(s)	136, 206, 348, 368, 651, 724, 750
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	2 cut(s)	202, 720
PciI	ACATGT	1 cut(s)	364
PctI	GAATGC	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	706, 861
PfeI	GAWTC	2 cut(s)	161, 391
PkrI	GCNGC	5 cut(s)	139, 275, 278, 460, 967
PleI	GAGTC	4 cut(s)	269, 428, 899, 905
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
PpsI	GAGTC	4 cut(s)	269, 428, 899, 905
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	738
PscI	ACATGT	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	228, 895, 931
PspCI	CACGTG	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	3 cut(s)	228, 895, 931
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	226, 425, 738, 899
PspPPI	RGGWCCY	1 cut(s)	738
PsuI	RGATCY	2 cut(s)	283, 784
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	3 cut(s)	168, 479, 577
RsaNI	GTAC	3 cut(s)	167, 478, 576
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	5 cut(s)	138, 274, 277, 459, 966
Sau3AI	GATC	7 cut(s)	94, 205, 283, 644, 758, 784, 1022
Sau96I	GGNCC	4 cut(s)	226, 425, 738, 899
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	4 cut(s)	270, 428, 899, 905
ScrFI	CCNGG	3 cut(s)	230, 897, 933
SexAI	ACCWGGT	1 cut(s)	931
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	2 cut(s)	226, 738
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	7 cut(s)	329, 496, 518, 653, 706, 861, 1044
SsiI	CCGC	3 cut(s)	276, 636, 674
SspI	AATATT	1 cut(s)	1037
SspMI	CTAG	2 cut(s)	599, 824
StyD4I	CCNGG	3 cut(s)	228, 895, 931
TaaI	ACNGT	2 cut(s)	404, 593
TaiI	ACGT	2 cut(s)	492, 832
TaqI	TCGA	2 cut(s)	210, 483
TasI	AATT	7 cut(s)	329, 496, 518, 653, 706, 861, 1044
TatI	WGTACW	2 cut(s)	477, 575
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	161, 391
TscAI	CASTG	2 cut(s)	156, 409
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	4 cut(s)	137, 273, 458, 965
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	6 cut(s)	174, 282, 320, 709, 807, 969
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	156, 409
VpaK11BI	GGWCC	2 cut(s)	226, 738
XapI	RAATTY	4 cut(s)	496, 653, 706, 861
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	706, 861
XspI	CTAG	2 cut(s)	599, 824
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.